mRNA_L-digitata_M_contig996.8.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig996.8.1 vs. uniprot
Match: A0A6H5JXD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD5_9PHAE) HSP 1 Score: 325 bits (833), Expect = 7.490e-102 Identity = 176/307 (57.33%), Postives = 221/307 (71.99%), Query Frame = 3
Query: 378 AAREWSS------GLAGAAADEQGLPSAFPWREAPDNR-VQGLLNRALYASMQNSHRKILGLVENVHG--DEAFLPSAEMAFVQVAAGVFQMRASQVVALLIEEGAGRQEEDSQGTNDRETARGGAASSGLPEDDIVDPRDVMHEDLATFYLEAAAATKVSRCTPFYRLHRICNSKISNVNIFWGARRGDLPKPGEIVEFMGTAVATESVFKDLEAVIRARYFRDRDMLNKGSLSSLRKSTVQVDVDVLCSETFFVVDDRTEQVVQGSKAVGSRTHRLRLECCPILNRDFRWTAVDLDVWMKGNTFW 1271
A R WSS G +AA+ GLPSAFPWREAPDNR V+GL+ RA+Y+ MQ+ HR+ L + D+AFL +AEMAFVQVAAGVFQM A QV+A L + G G + + S + DR R G +PE +VDPRDVMH+DLA FY++AA A KVSR TPFYRLH + + +ISNVN+ WGA+RGDLP+ GE +E G+ +SV +D++A+ R R +DRD+L+K LSS+RK+TVQVDVD+ C+ETFFV DDRTE++VQGSKA R HRLRLE P L RDF+W+ VDLD WMKGNTFW
Sbjct: 48 ATRGWSSSGFATPGGDASAAEVPGLPSAFPWREAPDNRGVRGLVERAMYSVMQHQHRRFLRAATKLDDADDDAFLRAAEMAFVQVAAGVFQMPAHQVIAPLAD-GEGDEGKSSSESGDRGRRRDGLPVWDIPEGALVDPRDVMHKDLADFYVQAAVAAKVSRSTPFYRLHGLRSCEISNVNVLWGAQRGDLPEEGETIEIWGSKYVLKSVLEDIKAISRYRVSKDRDVLDK-PLSSIRKTTVQVDVDIGCTETFFVSDDRTEEIVQGSKAFAVRKHRLRLESSPFLKRDFQWSVVDLDDWMKGNTFW 352
BLAST of mRNA_L-digitata_M_contig996.8.1 vs. uniprot
Match: D8LFT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT8_ECTSI) HSP 1 Score: 206 bits (525), Expect = 6.090e-57 Identity = 135/316 (42.72%), Postives = 176/316 (55.70%), Query Frame = 3
Query: 384 REWSS-------GLAGAAADEQGLPSAFPWREAPDNR-VQGLLNRALYASMQNSHRKILGLVENVHG--DEAFLPSAEMAFVQVAAGVFQMRASQVVALLIEEGAGRQEEDSQGTNDRETARG----------GAASSGLPEDDIVDPRDVMHEDLATFYLEAAAATKVSRCTPFYRLHRICNSKISNVNIFWGARRGDLPKPGEIVEFMGTAVATESVFKDLEAVIRARYFRDRDMLNKGSLSSLRKSTVQVDVDVLCSETFFVVDDRTEQVVQGSKAVGSRTHRLRLECCPILNRDFRWTAVDLDVWMKGNTFW 1271
R WSS G AGAA + GLPSAFPWREA DNR ++GL+ RA+Y+ MQ+ HR+ L + D+AFL + V+ AS + GR+ + G + G +PE +VDPRDVMH+DLA FY++AA A KVSR TPFYRLH + +ISNVN+ WGA+RGDLP+ GE +E G+ +SV +D++A+ R R +DR L+K LSS+RK+TVQVDVD+ C+ETFFV D+RTE+VV DLD WMKGNTFW
Sbjct: 56 RGWSSSGFATPGGDAGAA-EMPGLPSAFPWREATDNRGMRGLVERAMYSVMQHQHRRFLRAATKLDDADDDAFLATCRRNGVRPGGRRGLPDASASGYRTPHQRGGRRRKGVFGIGGPREEKACVYPTLYPGDGLPVWDIPEGALVDPRDVMHKDLAEFYVQAAVAAKVSRSTPFYRLHGFTSCEISNVNVLWGAQRGDLPEEGETIEIWGSKYVLKSVLEDIKAISRYRVNKDRAGLDK-PLSSIRKTTVQVDVDIGCTETFFVSDNRTEEVV------------------------------DLDNWMKGNTFW 339
BLAST of mRNA_L-digitata_M_contig996.8.1 vs. uniprot
Match: A0A836C9B7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9B7_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 3.960e-17 Identity = 75/210 (35.71%), Postives = 99/210 (47.14%), Query Frame = 3
Query: 702 DRETARGGAASSGLPEDDIVDPRDVMHEDLATFYLEAAAATKVSRCTPFYRLHRICNSKISNVNIFWGARRGDL--PK--PGEIVEFMGTAVATESVFKDL-EAVIRARYFRDRDMLNKGSLSSLRKSTVQVDVDVLCSETFFVVDDRTEQVVQGSKAVGSRTHRLRLECCP-------------ILNR-----DFRWTAVDLDVWMKGN 1262
D E A G +A+ D D R VM E LA FY AAA +S P Y LH I ++ + + GA RGD P+ P E+VE + VA L E ++A D DM S++ TV VDV +C ETFFV D T+ +VQGS A+ +R H +RLE +L R D W +D+D W+ GN
Sbjct: 119 DAEKAPGASAADAGGADAEFDLRAVMEEKLADFYAAAAAQAALSGLAPCYVLHGIVSADVVGAGVQKGAARGDPHDPRGDPHELVEMWRSMVALARRSATLTETEMKAAI--DEDMQRFMRRESVQ--TVHVDVQCICRETFFVRDTATDTIVQGSDAIATRAHHVRLETTQRRLHSIREATLESVLKRELDWSDVDWQVIDIDGWLGGN 324
BLAST of mRNA_L-digitata_M_contig996.8.1 vs. uniprot
Match: A0A835YZ99_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ99_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 2.310e-14 Identity = 99/358 (27.65%), Postives = 144/358 (40.22%), Query Frame = 3
Query: 399 GLAGAAADEQGLPSAFPWREAPDNRVQGLLNRAL-YASMQNSHRKILGLVENVHGDEAFLPSAEMAFVQVAAGVFQMRASQVVALLIEEGAGRQEEDSQGTND----------RETARGGAASSGLP------------------------EDDI-VDPRDVMHEDLATFYLEAAAATKVSRCTPFYRLHRICNSKISNVNIFWGARRGDLPKPGEIVEFMGTAVATESVFKDLEAVIRARYFR-----------------DRDMLNKGSLSSLRKSTVQVDVDVLCSETFFVVDDRTEQVVQGSKAVGSRTHRLRLECC---PILNR--------------DFRWTAVDLDVWMKGN 1262
G G AA G S+FPWREAP V GL Y + +++ G + + +AF AA +FQ Q + L++ A ++ + G++ R + RGG S + E D+ +D R VM E+LA FY AAA P Y LH I + I + GA RGD P I E G V ++ + R R +++L++ +S R TV VD+ ++C ETFFV T +VQGS AV +RTH++RLE P+ + D W +D+D W+ GN
Sbjct: 208 GTVGGAASTSGNLSSFPWREAPA-AVSGLTKAYRNYKAEFRVMKRLGGGASSWYTAREIPKGGAVAFRACAAAIFQT--GQPLQALVKGKADSRDGGAGGSSTFTPSDGSPSGRSSIRGGVRSGNVAPAKAGGXXXXXXXSVLSTADTDTGEADMKLDLRAVMEENLADFYASAAAQASARGLAPCYALHDIVDVTIVGTGMVEGAVRGDAFDP-RIHEDSGMKVFLRNMGNAFRQIYPTRRRRGGPGPVSLSVAEQEAIIQKEVLDR-MMSRQRIRTVHVDLQLVCRETFFVRKTATGAIVQGSDAVETRTHQVRLESTQRRPVPSAFDLAALEAASKVWSDINWQVIDIDGWLDGN 560
BLAST of mRNA_L-digitata_M_contig996.8.1 vs. uniprot
Match: A0A836CA16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA16_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.180e-12 Identity = 62/206 (30.10%), Postives = 88/206 (42.72%), Query Frame = 3
Query: 723 GAASSGLPEDDIVDPRDVMHEDLATFYLEAAAATKVSRCTPFYRLHRICNSKISNVNIFWGARRGDLPKPGEIVEFMGTAVATESVFKDLEAVIRARYFRDRDMLNKGSLSSLRKSTVQVDVDVLCSETFFVVDDRTEQVVQGSKAVGSRTHRLRLECCPILN---------------------RDFRWTAVDLDVWMKGNTFW*P 1277
GA S GL DP VM LA F+ AAA +S P Y LH + ++ V G RGD T + L +++ + D + S+ R T+ VDVD++C +TFFV + T+ +VQGS AV +RTHR+RLE D W +D+D W+ GN+ + P
Sbjct: 567 GAGSGGL------DPHAVMEPKLADFFAAAAAQAALSGLAPCYVLHGVVDAAAVRVTSVRGLARGD----------------TYDAARGLPPLVQLWRKKGGDDI----FSAERIRTLHVDVDIVCRDTFFVRETATDAIVQGSDAVQTRTHRVRLETTQRRTYVPEDFDMERPWEFKKEWDVWTDLDWQVIDIDDWLDGNSMYAP 746 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig996.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig996.8.1 >prot_L-digitata_M_contig996.8.1 ID=prot_L-digitata_M_contig996.8.1|Name=mRNA_L-digitata_M_contig996.8.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=322bp MRATTTAVARFSGPMRTRLLARAAAREWSSGLAGAAADEQGLPSAFPWREback to top mRNA from alignment at L-digitata_M_contig996:14628..19070- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig996.8.1 ID=mRNA_L-digitata_M_contig996.8.1|Name=mRNA_L-digitata_M_contig996.8.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=4443bp|location=Sequence derived from alignment at L-digitata_M_contig996:14628..19070- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig996:14628..19070- >mRNA_L-digitata_M_contig996.8.1 ID=mRNA_L-digitata_M_contig996.8.1|Name=mRNA_L-digitata_M_contig996.8.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=966bp|location=Sequence derived from alignment at L-digitata_M_contig996:14628..19070- (Laminaria digitata LdigPH10_18mv male)back to top |