mRNA_L-digitata_M_contig99568.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99568.1.1
Unique NamemRNA_L-digitata_M_contig99568.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99568.1.1 vs. uniprot
Match: A0A6H5K8P6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P6_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 6.660e-46
Identity = 86/115 (74.78%), Postives = 93/115 (80.87%), Query Frame = 1 
Query:    7 EVRAIVARRREFEYMLRRQEARRLDYMRYAEHELNLESLRALRTKRLGAGKG----FKDNKQKKKGXXAAATSDFSCVRLVRWIFDRAVMKFPGDVDIWLHYIDFTARQGQTKVR 339
            EVRAIV+RR+ FEYMLRR EARRLDYMRY E+ELNLESLRALRT+R+  G             KKG   AAT+DF CVRLVRWIFDRAVMKFPGDVDIWLHYIDFTARQGQ+KVR
Sbjct:   67 EVRAIVSRRKGFEYMLRRHEARRLDYMRYVEYELNLESLRALRTRRVEGGASGXXXXXXXXXTKKGK--AATADFCCVRLVRWIFDRAVMKFPGDVDIWLHYIDFTARQGQSKVR 179
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BLAST of mRNA_L-digitata_M_contig99568.1.1 vs. uniprot
Match: A0A7I6MYP0_9STRA (U3 small nucleolar RNA-associated protein 6 (Fragment) n=1 Tax=Aphanomyces iridis TaxID=601994 RepID=A0A7I6MYP0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.300e-20
Identity = 51/116 (43.97%), Postives = 74/116 (63.79%), Query Frame = 1 
Query:    4 DEVRAIVARRREFEYMLRRQEARRLDYMRYAEHELNLESLRALRTKRLGAGKGFKDNKQKKKGXXAAATSDFSCVRLVRWIFDRAVMKFPGDVDIWLHYIDFTARQGQTKVRSRFY 351
            DE+R IV +RR+FEY ++R   R++D +RY E+E+NL++LR  R KR+G         QKK      + SDF+ ++ V  IFDRA+MK  GDVD+WL +I F    G TK+ S+ +
Sbjct:    1 DEIRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYEINLDALRRQRKKRMGL--------QKK------SLSDFAGMQRVHNIFDRALMKHRGDVDLWLQHIAFCKNTGSTKIMSKLF 102
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BLAST of mRNA_L-digitata_M_contig99568.1.1 vs. uniprot
Match: A0A425D2I6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D2I6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.360e-19
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:    4 DEVRAIVARRREFEYMLRRQEARRLDYMRYAEHELNLESLRALRTKRLGAGKGFKDNKQKKKGXXAAATSDFSCVRLVRWIFDRAVMKFPGDVDIWLHYIDFTARQGQTKVRSRFY 351
            DEVR IV +RR+FEY ++R   R++D +RY E+ELNL++LR  R KR+G  K               + SD S ++ V  IFDRA+MK  GDVD+WL +I F    G +K+ S+ +
Sbjct:   28 DEVRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYELNLDALRRQRKKRMGLTK--------------LSLSDHSGMQRVHNIFDRALMKHRGDVDLWLQHIAFCKNTGSSKLLSKLF 129
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BLAST of mRNA_L-digitata_M_contig99568.1.1 vs. uniprot
Match: A0A396ZLQ1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZLQ1_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.600e-18
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:    4 DEVRAIVARRREFEYMLRRQEARRLDYMRYAEHELNLESLRALRTKRLGAGKGFKDNKQKKKGXXAAATSDFSCVRLVRWIFDRAVMKFPGDVDIWLHYIDFTARQGQTKVRSRFY 351
            DEVR IV +RR+FEY ++R   R++D +RY E+ELNL++LR  R KR+G  K               + SD S ++ V  IFDRA+MK  GDVD+WL +I F    G +K+ S+ +
Sbjct:   28 DEVRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYELNLDALRRQRKKRMGLTK--------------LSLSDHSGMQRVHNIFDRALMKHRGDVDLWLQHIAFCKNTGSSKLLSKLF 129
[Close]
BLAST of mRNA_L-digitata_M_contig99568.1.1 vs. uniprot
Match: A0A6G0XVP7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVP7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.250e-18
Identity = 51/116 (43.97%), Postives = 74/116 (63.79%), Query Frame = 1 
Query:    4 DEVRAIVARRREFEYMLRRQEARRLDYMRYAEHELNLESLRALRTKRLGAGKGFKDNKQKKKGXXAAATSDFSCVRLVRWIFDRAVMKFPGDVDIWLHYIDFTARQGQTKVRSRFY 351
            DE+R IV +RR+FEY ++R   R++D +RY E+E+NL++LR  R KR+G         QKK      + SDF+ ++ V  IFDRA+MK  GDVD+WL +I F    G TK+ S+ +
Sbjct:   28 DEIRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYEINLDALRRQRKKRMGL--------QKK------SLSDFAGMQRVHNIFDRALMKHRGDVDLWLQHIAFCKNTGSTKIMSKLF 129
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BLAST of mRNA_L-digitata_M_contig99568.1.1 vs. uniprot
Match: A0A1Y1Y702_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y702_9FUNG)

HSP 1 Score: 86.3 bits (212), Expect = 2.740e-17
Identity = 49/117 (41.88%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:    4 DEVRAIVARRREFEYMLRRQEARRLDYMRYAEHELNLESLRALRTKRLGAGKGFKDNKQKKKGXXAAATSDFSCVRLVRWIFDRAVMKFPGDVDIWLHYIDFTARQGQTKVRSRFYA 354
            +E+R+IV +R  FEY L+R+  +++DY+RY E+ELNLE+LR  R  RL       D K K       + SD++  R V +IF+RA++KF GDV +WL ++DF  R    K+ S+ +A
Sbjct:   28 EEIRSIVKKRTNFEYALKRRSPKKIDYLRYIEYELNLENLRKKRKARL-------DIKGK------PSVSDYAGPRRVNFIFERALLKFKGDVPLWLQWVDFAKRNKMNKLLSKIFA 131
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BLAST of mRNA_L-digitata_M_contig99568.1.1 vs. uniprot
Match: W7TSJ7_9STRA (RNA-processing protein, HAT helix n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSJ7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.790e-17
Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = 1 
Query:    4 DEVRAIVARRREFEYMLRRQEARRLDYMRYAEHELNLESLRALRTKRLGAGKGFKDNKQKKKGXXAAATSDFSCVRLVRWIFDRAVMKFPGDVDIWLHYIDFTARQGQTKVRSR 345
            +EVRAI ++RR+FE++LRR+ AR+ D++RY  HELNLE LR LR              + K G    + SD +   L+ +IF+RA+ KF GD+++WL Y+D+    G  K  SR
Sbjct:   28 EEVRAIASKRRDFEFLLRRRTARKNDFLRYITHELNLEELRHLR--------------KHKAGLVKTSLSDHAGRGLIHFIFERALRKFRGDLELWLQYLDYCESTGSHKAHSR 127
[Close]
BLAST of mRNA_L-digitata_M_contig99568.1.1 vs. uniprot
Match: A0A7I6N543_9STRA (U3 small nucleolar RNA-associated protein 6 (Fragment) n=1 Tax=Halophytophthora batemanensis TaxID=127446 RepID=A0A7I6N543_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.940e-17
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:    7 EVRAIVARRREFEYMLRRQEARRLDYMRYAEHELNLESLRALRTKRLGAGKGFKDNKQKKKGXXAAATSDFSCVRLVRWIFDRAVMKFPGDVDIWLHYIDFTARQGQTKVRS 342
            EVR IVA+RR+FEY LRR   R++D +RY E+EL L++LRA R  RLG  K                  D + VR V  +FDRA+ KF G V++WL Y+ F   +G  +V S
Sbjct:   15 EVRQIVAKRRDFEYALRRLPMRKIDALRYIEYELQLDALRAARKTRLGLTK--------------TTLGDTAGVRRVHALFDRALRKFRGSVELWLQYVAFCQSEGSDRVLS 112
[Close]
BLAST of mRNA_L-digitata_M_contig99568.1.1 vs. uniprot
Match: W4H669_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H669_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.970e-17
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:    4 DEVRAIVARRREFEYMLRRQEARRLDYMRYAEHELNLESLRALRTKRLGAGKGFKDNKQKKKGXXAAATSDFSCVRLVRWIFDRAVMKFPGDVDIWLHYIDFTARQGQTKVRSRFY 351
            DEVR IV +RR+FEY ++R   R++D +RY E+ELNL++LR  R KR+G  K               + SD S ++ V  IFDRA+MK  GDVD+WL +I F    G +K+ S+ +
Sbjct:   28 DEVRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYELNLDALRRQRKKRMGLTK--------------LSLSDHSGMQRVHNIFDRALMKHRGDVDLWLQHIAFCKNTGSSKLLSKLF 129
[Close]
BLAST of mRNA_L-digitata_M_contig99568.1.1 vs. uniprot
Match: A0A7I6MX11_9STRA (U3 small nucleolar RNA-associated protein 6 (Fragment) n=1 Tax=Halophytophthora exoprolifera TaxID=707993 RepID=A0A7I6MX11_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.120e-17
Identity = 50/110 (45.45%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:    7 EVRAIVARRREFEYMLRRQEARRLDYMRYAEHELNLESLRALRTKRLGAGKGFKDNKQKKKGXXAAATSDFSCVRLVRWIFDRAVMKFPGDVDIWLHYIDFTARQGQTKV 336
            E+ AIV +RR FEYML+RQ  R++D +RY E+ELNL++LRA R +RLG  K  K              SD + VR V  IFDRA+ K  G V++WL Y+ F  R+   +V
Sbjct:   10 EIHAIVEKRRGFEYMLKRQPLRKIDALRYIEYELNLDALRAKRKERLGLVKLEK--------------SDTAGVRRVHSIFDRALYKHRGSVELWLQYVAFCKREESGRV 105
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99568.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8P6_9PHAE6.660e-4674.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7I6MYP0_9STRA4.300e-2043.97U3 small nucleolar RNA-associated protein 6 (Fragm... [more]
A0A425D2I6_9STRA7.360e-1943.10Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A396ZLQ1_9STRA3.600e-1843.10Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0XVP7_9STRA4.250e-1843.97Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1Y1Y702_9FUNG2.740e-1741.88Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
W7TSJ7_9STRA2.790e-1742.11RNA-processing protein, HAT helix n=2 Tax=Monodops... [more]
A0A7I6N543_9STRA6.940e-1743.75U3 small nucleolar RNA-associated protein 6 (Fragm... [more]
W4H669_9STRA6.970e-1743.10Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
A0A7I6MX11_9STRA8.120e-1745.45U3 small nucleolar RNA-associated protein 6 (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99568contigL-digitata_M_contig99568:449..802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSS2
PFAMsU3_assoc_6
Model size354
Max annot lvl2759|Eukaryota
KEGG koko:K14557
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons1
Evalue3.31e-44
EggNOG OGsCOG5191@1|root,KOG2396@2759|Eukaryota
DescriptionsnoRNA binding
Cds size354
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408654.4605362-CDS-L-digitata_M_contig99568:448..8021682408654.4605362-CDS-L-digitata_M_contig99568:448..802Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99568 449..802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99568.1.1prot_L-digitata_M_contig99568.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99568 449..802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99568.1.1

>prot_L-digitata_M_contig99568.1.1 ID=prot_L-digitata_M_contig99568.1.1|Name=mRNA_L-digitata_M_contig99568.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=118bp
QDEVRAIVARRREFEYMLRRQEARRLDYMRYAEHELNLESLRALRTKRLG
AGKGFKDNKQKKKGGGAAATSDFSCVRLVRWIFDRAVMKFPGDVDIWLHY
IDFTARQGQTKVRSRFYA
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mRNA from alignment at L-digitata_M_contig99568:449..802-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99568.1.1 ID=mRNA_L-digitata_M_contig99568.1.1|Name=mRNA_L-digitata_M_contig99568.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=354bp|location=Sequence derived from alignment at L-digitata_M_contig99568:449..802- (Laminaria digitata LdigPH10_18mv male)
CAGGACGAAGTTCGCGCCATCGTAGCGAGGAGGAGGGAGTTCGAGTATAT
GCTCAGGCGGCAGGAGGCAAGGCGGCTTGACTACATGCGCTACGCCGAGC
ACGAGCTGAACCTTGAGTCGCTTCGGGCACTCCGCACAAAGCGCCTCGGC
GCAGGCAAGGGCTTTAAGGATAATAAGCAGAAGAAGAAGGGGGGGGGGGC
GGCGGCGACGTCTGATTTTTCGTGCGTGAGGCTTGTGCGGTGGATTTTCG
ACCGGGCGGTCATGAAGTTTCCCGGAGATGTTGACATATGGCTGCACTAC
ATCGATTTCACGGCGCGGCAGGGGCAGACCAAGGTGCGCTCGCGCTTTTA
CGCG
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Coding sequence (CDS) from alignment at L-digitata_M_contig99568:449..802-

>mRNA_L-digitata_M_contig99568.1.1 ID=mRNA_L-digitata_M_contig99568.1.1|Name=mRNA_L-digitata_M_contig99568.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=354bp|location=Sequence derived from alignment at L-digitata_M_contig99568:449..802- (Laminaria digitata LdigPH10_18mv male)
CAGGACGAAGTTCGCGCCATCGTAGCGAGGAGGAGGGAGTTCGAGTATAT
GCTCAGGCGGCAGGAGGCAAGGCGGCTTGACTACATGCGCTACGCCGAGC
ACGAGCTGAACCTTGAGTCGCTTCGGGCACTCCGCACAAAGCGCCTCGGC
GCAGGCAAGGGCTTTAAGGATAATAAGCAGAAGAAGAAGGGGGGGGGGGC
GGCGGCGACGTCTGATTTTTCGTGCGTGAGGCTTGTGCGGTGGATTTTCG
ACCGGGCGGTCATGAAGTTTCCCGGAGATGTTGACATATGGCTGCACTAC
ATCGATTTCACGGCGCGGCAGGGGCAGACCAAGGTGCGCTCGCGCTTTTA
CGCG
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