mRNA_L-digitata_M_contig99541.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99541.1.1
Unique NamemRNA_L-digitata_M_contig99541.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99541.1.1 vs. uniprot
Match: A0A418WIT0_9PROT (DUF1009 domain-containing protein n=2 Tax=Oleomonas cavernae TaxID=2320859 RepID=A0A418WIT0_9PROT)

HSP 1 Score: 51.2 bits (121), Expect = 1.950e-6
Identity = 24/34 (70.59%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 GLAGVAVAAGSTLVFEKDALIAEADAAGMFVIGI 102
            GLAG+AVAAG+TLV ++DAL+A ADA G+FV+GI
Sbjct:  239 GLAGIAVAAGATLVLDRDALVARADALGLFVVGI 272
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BLAST of mRNA_L-digitata_M_contig99541.1.1 vs. uniprot
Match: A0A6N8SBS8_9HYPH (UDP-2,3-diacylglucosamine diphosphatase LpxI n=2 Tax=Shinella TaxID=323620 RepID=A0A6N8SBS8_9HYPH)

HSP 1 Score: 50.1 bits (118), Expect = 5.240e-6
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 GLAGVAVAAGSTLVFEKDALIAEADAAGMFVIGILP 108
            GLAGVAV AG +LV E++AL+AEADA G+FV GI+P
Sbjct:  250 GLAGVAVEAGRSLVLEREALVAEADAHGLFVTGIVP 285
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BLAST of mRNA_L-digitata_M_contig99541.1.1 vs. uniprot
Match: UPI001F2EE6FC (UDP-2,3-diacylglucosamine diphosphatase LpxI n=3 Tax=Shinella TaxID=323620 RepID=UPI001F2EE6FC)

HSP 1 Score: 50.1 bits (118), Expect = 5.240e-6
Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 GLAGVAVAAGSTLVFEKDALIAEADAAGMFVIGILP 108
            GLAG+AV AG +L+ E++ L+A+ADAAG+FV GILP
Sbjct:  250 GLAGIAVEAGRSLILERETLVAQADAAGLFVTGILP 285
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BLAST of mRNA_L-digitata_M_contig99541.1.1 vs. uniprot
Match: UPI00041117F5 (UDP-2,3-diacylglucosamine diphosphatase LpxI n=1 Tax=Salinarimonas rosea TaxID=552063 RepID=UPI00041117F5)

HSP 1 Score: 49.3 bits (116), Expect = 9.910e-6
Identity = 22/36 (61.11%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 GLAGVAVAAGSTLVFEKDALIAEADAAGMFVIGILP 108
            GLAG+A+ AG+TL  E+DA+IAEAD AG+F++G+ P
Sbjct:  251 GLAGIALGAGATLTIERDAMIAEADRAGLFLVGVDP 286
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BLAST of mRNA_L-digitata_M_contig99541.1.1 vs. uniprot
Match: A0A848W677_9PROT (UDP-2,3-diacylglucosamine diphosphatase LpxI n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W677_9PROT)

HSP 1 Score: 48.9 bits (115), Expect = 1.330e-5
Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 GLAGVAVAAGSTLVFEKDALIAEADAAGMFVIGILP 108
            GLAG+AVAAG+TLV E + + A+ADAAG+F++GI P
Sbjct:  236 GLAGIAVAAGATLVIEPNRVTADADAAGLFIVGIKP 271
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BLAST of mRNA_L-digitata_M_contig99541.1.1 vs. uniprot
Match: A0A2E7I3Z2_9PROT (UDP-2,3-diacylglucosamine pyrophosphatase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I3Z2_9PROT)

HSP 1 Score: 48.1 bits (113), Expect = 2.510e-5
Identity = 21/36 (58.33%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 GLAGVAVAAGSTLVFEKDALIAEADAAGMFVIGILP 108
            GLAG+A+ AG+TL+ ++  L+AEAD AG+FV+GI P
Sbjct:  236 GLAGIAIGAGNTLILDRTKLVAEADKAGLFVVGIRP 271
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BLAST of mRNA_L-digitata_M_contig99541.1.1 vs. uniprot
Match: UPI001D01AA79 (UDP-2,3-diacylglucosamine diphosphatase LpxI n=1 Tax=Kinneretia sp. XES5 TaxID=2877940 RepID=UPI001D01AA79)

HSP 1 Score: 47.8 bits (112), Expect = 3.490e-5
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 GLAGVAVAAGSTLVFEKDALIAEADAAGMFVIGILP 108
            GLAG+AV AG +LV E+D LIAEA+A G+FV GI+P
Sbjct:  250 GLAGIAVEAGRSLVLERDELIAEANAHGLFVTGIVP 285
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BLAST of mRNA_L-digitata_M_contig99541.1.1 vs. uniprot
Match: UPI0014126EE2 (LpxI family protein n=1 Tax=Rhizobium sp. CRIBSB TaxID=2683264 RepID=UPI0014126EE2)

HSP 1 Score: 47.8 bits (112), Expect = 3.500e-5
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 GLAGVAVAAGSTLVFEKDALIAEADAAGMFVIGI 102
            GLAG+AV AG  LV E+DA+IA ADAAG+FV+G+
Sbjct:  254 GLAGIAVEAGRALVVERDAVIAAADAAGLFVVGV 287
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BLAST of mRNA_L-digitata_M_contig99541.1.1 vs. uniprot
Match: A0A0Q7A1G0_9HYPH (Uncharacterized protein n=4 Tax=Rhizobium TaxID=379 RepID=A0A0Q7A1G0_9HYPH)

HSP 1 Score: 47.0 bits (110), Expect = 6.580e-5
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 GLAGVAVAAGSTLVFEKDALIAEADAAGMFVIGI 102
            GLAG+AV AG  LV E++A+IA ADAAG+FV+GI
Sbjct:  254 GLAGIAVEAGRALVVEREAMIAAADAAGLFVVGI 287
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BLAST of mRNA_L-digitata_M_contig99541.1.1 vs. uniprot
Match: A0A7C8HMB2_9CAUL (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7C8HMB2_9CAUL)

HSP 1 Score: 46.6 bits (109), Expect = 8.900e-5
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 GLAGVAVAAGSTLVFEKDALIAEADAAGMFVIGILP 108
            GLAG+AV AG  L+ +++ALIA ADA G+FVIG  P
Sbjct:  244 GLAGIAVEAGGALIMQREALIARADALGLFVIGFTP 279
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99541.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A418WIT0_9PROT1.950e-670.59DUF1009 domain-containing protein n=2 Tax=Oleomona... [more]
A0A6N8SBS8_9HYPH5.240e-669.44UDP-2,3-diacylglucosamine diphosphatase LpxI n=2 T... [more]
UPI001F2EE6FC5.240e-663.89UDP-2,3-diacylglucosamine diphosphatase LpxI n=3 T... [more]
UPI00041117F59.910e-661.11UDP-2,3-diacylglucosamine diphosphatase LpxI n=1 T... [more]
A0A848W677_9PROT1.330e-563.89UDP-2,3-diacylglucosamine diphosphatase LpxI n=1 T... [more]
A0A2E7I3Z2_9PROT2.510e-558.33UDP-2,3-diacylglucosamine pyrophosphatase n=2 Tax=... [more]
UPI001D01AA793.490e-566.67UDP-2,3-diacylglucosamine diphosphatase LpxI n=1 T... [more]
UPI0014126EE23.500e-567.65LpxI family protein n=1 Tax=Rhizobium sp. CRIBSB T... [more]
A0A0Q7A1G0_9HYPH6.580e-567.65Uncharacterized protein n=4 Tax=Rhizobium TaxID=37... [more]
A0A7C8HMB2_9CAUL8.900e-561.11Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99541contigL-digitata_M_contig99541:2..109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1123229.AUBC01000013_gene2544
Preferred namecdsA2
PFAMsDUF1009
Model size108
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K09949
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008758,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509
Exons1
Evalue1.62e-06
EggNOG OGsCOG3494@1|root,COG3494@2|Bacteria,1MWTH@1224|Proteobacteria,2U4AB@28211|Alphaproteobacteria,3JRR0@41294|Bradyrhizobiaceae
DescriptionProtein of unknown function (DUF1009)
Cds size108
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408653.9783792-CDS-L-digitata_M_contig99541:1..1091682408653.9783792-CDS-L-digitata_M_contig99541:1..109Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99541 2..109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99541.1.1prot_L-digitata_M_contig99541.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99541 2..109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99541.1.1

>prot_L-digitata_M_contig99541.1.1 ID=prot_L-digitata_M_contig99541.1.1|Name=mRNA_L-digitata_M_contig99541.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=36bp
GLAGVAVAAGSTLVFEKDALIAEADAAGMFVIGILP
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mRNA from alignment at L-digitata_M_contig99541:2..109+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99541.1.1 ID=mRNA_L-digitata_M_contig99541.1.1|Name=mRNA_L-digitata_M_contig99541.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=108bp|location=Sequence derived from alignment at L-digitata_M_contig99541:2..109+ (Laminaria digitata LdigPH10_18mv male)
GGCTTGGCAGGGGTCGCTGTTGCAGCGGGTTCGACCCTTGTGTTCGAAAA
GGATGCACTGATCGCAGAAGCAGATGCCGCAGGAATGTTCGTGATCGGCA
TTCTACCT
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Coding sequence (CDS) from alignment at L-digitata_M_contig99541:2..109+

>mRNA_L-digitata_M_contig99541.1.1 ID=mRNA_L-digitata_M_contig99541.1.1|Name=mRNA_L-digitata_M_contig99541.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=108bp|location=Sequence derived from alignment at L-digitata_M_contig99541:2..109+ (Laminaria digitata LdigPH10_18mv male)
GGCTTGGCAGGGGTCGCTGTTGCAGCGGGTTCGACCCTTGTGTTCGAAAA
GGATGCACTGATCGCAGAAGCAGATGCCGCAGGAATGTTCGTGATCGGCA
TTCTACCT
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