mRNA_L-digitata_M_contig99264.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99264.1.1
Unique NamemRNA_L-digitata_M_contig99264.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A2E8XQI5_9PROT (3-hydroxyisobutyrate dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XQI5_9PROT)

HSP 1 Score: 190 bits (482), Expect = 4.100e-58
Identity = 94/115 (81.74%), Postives = 105/115 (91.30%), Query Frame = 1
Query:    1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFKHI 345
            LAIQMI+VSEGFAL +KL LD Q LFDIASTATSQCW+MTSYCPVPGPVPTSPAN +Y+AGFTVAMMLKDLKLAQEAA TVDANTPLG QATE+YDA++AAG++ LDFSAI + I
Sbjct:  178 LAIQMISVSEGFALGEKLGLDTQALFDIASTATSQCWAMTSYCPVPGPVPTSPANNNYQAGFTVAMMLKDLKLAQEAAATVDANTPLGTQATEMYDAYAAAGNEDLDFSAIIRQI 292          
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A2E7PMJ8_9PROT (3-hydroxyisobutyrate dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PMJ8_9PROT)

HSP 1 Score: 188 bits (477), Expect = 2.340e-57
Identity = 91/115 (79.13%), Postives = 102/115 (88.70%), Query Frame = 1
Query:    1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFKHI 345
            LAIQMIAVSEGF LA+KL L+ QKLFDI+STAT+QCW+MTSYCPVPGPVPTSPAN DY AGFTVAMMLKDLKL+QE A    ANTPLGA ATE+YDA++ AGH+GLDFSAI +HI
Sbjct:  178 LAIQMIAVSEGFGLAEKLGLNAQKLFDISSTATAQCWAMTSYCPVPGPVPTSPANNDYAAGFTVAMMLKDLKLSQEVASITGANTPLGAHATELYDAYATAGHEGLDFSAIIRHI 292          
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A2E7I2V1_9PROT (3-hydroxyisobutyrate dehydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I2V1_9PROT)

HSP 1 Score: 179 bits (455), Expect = 4.900e-54
Identity = 87/117 (74.36%), Postives = 100/117 (85.47%), Query Frame = 1
Query:    1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFKHIAD 351
            LAIQMIAVSEGF LA+KL LD QKLFDI+STAT+QCW+MTSYCPVPGPVP+SPAN  Y AGFTVAMMLKDLKL+QE A    ANTPLGA ATE++DA++  G++ LDFSAI +HI D
Sbjct:  178 LAIQMIAVSEGFGLAEKLGLDAQKLFDISSTATAQCWAMTSYCPVPGPVPSSPANNKYAAGFTVAMMLKDLKLSQEVASLTGANTPLGAHATELFDAYAGEGNENLDFSAIIRHITD 294          
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A848W4Q6_9PROT (3-hydroxyisobutyrate dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W4Q6_9PROT)

HSP 1 Score: 176 bits (447), Expect = 8.110e-53
Identity = 88/119 (73.95%), Postives = 104/119 (87.39%), Query Frame = 1
Query:    1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDG-LDFSAIFKHIADA 354
            LAI+MIAVSEGF LA+KL+LD QKL+DI STATSQCW+MTSYCPVPGPVP+SPAN DY AGFTVAMMLKDLKL+QEAA + DANTPLGA AT++YD+F++ G +  LDFSAI + I D+
Sbjct:  178 LAIEMIAVSEGFLLAEKLDLDAQKLWDIVSTATSQCWAMTSYCPVPGPVPSSPANNDYAAGFTVAMMLKDLKLSQEAAASADANTPLGAHATQLYDSFASLGDNAELDFSAIIRQIRDS 296          
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A6N7JQ23_9PROT (3-hydroxyisobutyrate dehydrogenase n=2 Tax=Azospirillaceae TaxID=2829815 RepID=A0A6N7JQ23_9PROT)

HSP 1 Score: 172 bits (436), Expect = 3.590e-51
Identity = 85/115 (73.91%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFKHI 345
            L I MIAVSE FALADKL LD+QKLFDI+S ++ QCWS+TSYCPVPGPVPTSPANRDY+ GF V MMLKDLKLAQ+AA +  A+TPLGAQA  +Y  FSAAGH GLDFSAI K +
Sbjct:  178 LGISMIAVSEAFALADKLGLDRQKLFDISSKSSGQCWSLTSYCPVPGPVPTSPANRDYQPGFAVDMMLKDLKLAQQAAASAGASTPLGAQAAALYQLFSAAGHGGLDFSAIVKML 292          
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A2S6QH70_9PROT (3-hydroxyisobutyrate dehydrogenase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QH70_9PROT)

HSP 1 Score: 170 bits (430), Expect = 2.960e-50
Identity = 85/116 (73.28%), Postives = 102/116 (87.93%), Query Frame = 1
Query:    1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAG-HDGLDFSAIFKHI 345
            L I+MIAVSEGF LADKL LDKQKL+DIASTATSQCW+MT+YCPVPGPVP+SPANRDY+AGFT+AMMLKDLKL+QEAA+   A TPL A AT++Y++F++   +DGLDFS+I K I
Sbjct:  178 LGIEMIAVSEGFVLADKLGLDKQKLWDIASTATSQCWAMTNYCPVPGPVPSSPANRDYQAGFTIAMMLKDLKLSQEAAKNNGAFTPLAALATDLYESFASTNQNDGLDFSSIIKLI 293          
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A2K9NHI1_9PROT (3-hydroxyisobutyrate dehydrogenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2K9NHI1_9PROT)

HSP 1 Score: 169 bits (427), Expect = 8.160e-50
Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFKHI 345
            L I MIAVSE FALADKL L++QKLFDI+ST++ QCWS+TSYCPVPGPVPTSPANRDY  GF V MMLKDLKLAQ+AA +  A+TPLGAQA  +Y  FSAAG+ GLDFSAI K +
Sbjct:  178 LGISMIAVSEAFALADKLGLERQKLFDISSTSSGQCWSLTSYCPVPGPVPTSPANRDYAPGFAVDMMLKDLKLAQQAAASSGASTPLGAQAASLYQLFSAAGNGGLDFSAIVKML 292          
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A346R1A0_9HYPH (3-hydroxyisobutyrate dehydrogenase n=1 Tax=Breoghania sp. L-A4 TaxID=2304600 RepID=A0A346R1A0_9HYPH)

HSP 1 Score: 169 bits (428), Expect = 9.290e-50
Identity = 81/115 (70.43%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFKHI 345
            L I MI VSE F LA+KL LD QKLFDIASTA+ QCWSMTSYCPVPGPVP SPANRDY+ GF  AMMLKDLKLAQ+AA++VDA+TPLGA+A+ +Y  F  AG++G+DFS I K++
Sbjct:  191 LGISMIGVSEAFVLAEKLGLDHQKLFDIASTASGQCWSMTSYCPVPGPVPASPANRDYQPGFAAAMMLKDLKLAQDAARSVDASTPLGAEASALYSLFCNAGNEGMDFSGIIKYL 305          
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: UPI001C6590B9 (NAD-binding protein n=1 Tax=Aerococcus urinae TaxID=1376 RepID=UPI001C6590B9)

HSP 1 Score: 165 bits (417), Expect = 1.040e-49
Identity = 80/115 (69.57%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFKHI 345
            L I MIAVSE F L +KL LD Q LF+I+STA+ QCWSMTSYCPVPGPVPTSPANRDY+ GFT AMMLKDL+LAQ+A++T  A TPLGAQA ++Y    A+GHDGLDFS + K I
Sbjct:   65 LGISMIAVSEAFVLGEKLGLDAQTLFNISSTASGQCWSMTSYCPVPGPVPTSPANRDYKPGFTAAMMLKDLRLAQDASKTAKAPTPLGAQAAQLYALMEASGHDGLDFSGVIKLI 179          
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: UPI0003FDABBA (3-hydroxyisobutyrate dehydrogenase n=1 Tax=Niveispirillum irakense TaxID=34011 RepID=UPI0003FDABBA)

HSP 1 Score: 168 bits (425), Expect = 1.630e-49
Identity = 83/113 (73.45%), Postives = 95/113 (84.07%), Query Frame = 1
Query:    1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFK 339
            L I MIAVSE FALADKL L++QKLFDI+ST++ QCWS+TSYCPVPGPVPTSPANRDY+ GF V MMLKDLKLAQ+AA +  A TPLGAQA  +Y  FSAAG+ G+DFSAI K
Sbjct:  178 LGISMIAVSEAFALADKLGLERQKLFDISSTSSGQCWSLTSYCPVPGPVPTSPANRDYQPGFAVDMMLKDLKLAQQAAASAGAATPLGAQAAALYQLFSAAGNGGMDFSAIVK 290          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8XQI5_9PROT4.100e-5881.743-hydroxyisobutyrate dehydrogenase n=1 Tax=Alphapr... [more]
A0A2E7PMJ8_9PROT2.340e-5779.133-hydroxyisobutyrate dehydrogenase n=1 Tax=Rhodosp... [more]
A0A2E7I2V1_9PROT4.900e-5474.363-hydroxyisobutyrate dehydrogenase n=2 Tax=Alphapr... [more]
A0A848W4Q6_9PROT8.110e-5373.953-hydroxyisobutyrate dehydrogenase n=1 Tax=Alphapr... [more]
A0A6N7JQ23_9PROT3.590e-5173.913-hydroxyisobutyrate dehydrogenase n=2 Tax=Azospir... [more]
A0A2S6QH70_9PROT2.960e-5073.283-hydroxyisobutyrate dehydrogenase n=1 Tax=Alphapr... [more]
A0A2K9NHI1_9PROT8.160e-5073.043-hydroxyisobutyrate dehydrogenase n=3 Tax=Alphapr... [more]
A0A346R1A0_9HYPH9.290e-5070.433-hydroxyisobutyrate dehydrogenase n=1 Tax=Breogha... [more]
UPI001C6590B91.040e-4969.57NAD-binding protein n=1 Tax=Aerococcus urinae TaxI... [more]
UPI0003FDABBA1.630e-4973.453-hydroxyisobutyrate dehydrogenase n=1 Tax=Niveisp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99264contigL-digitata_M_contig99264:1..357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog414684.RC1_1347
Preferred namemmsB
PFAMsNAD_binding_11,NAD_binding_2
Model size357
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00099
KEGG koko:K00020
KEGG ReactionR05066
KEGG Pathwayko00280,ko01100,map00280,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.16e-48
EggNOG OGsCOG2084@1|root,COG2084@2|Bacteria,1RA7F@1224|Proteobacteria,2UVAZ@28211|Alphaproteobacteria,2JR0K@204441|Rhodospirillales
EC1.1.1.31
DescriptionBelongs to the 3-hydroxyisobutyrate dehydrogenase family
Cds size345
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408650.7897677-UTR-L-digitata_M_contig99264:0..121682408650.7897677-UTR-L-digitata_M_contig99264:0..12Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig99264 1..12 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408650.8161538-CDS-L-digitata_M_contig99264:12..3571682408650.8161538-CDS-L-digitata_M_contig99264:12..357Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99264 13..357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99264.1.1prot_L-digitata_M_contig99264.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99264 13..357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99264.1.1

>prot_L-digitata_M_contig99264.1.1 ID=prot_L-digitata_M_contig99264.1.1|Name=mRNA_L-digitata_M_contig99264.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=115bp
MIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPA
NRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHD
GLDFSAIFKHIADA*
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mRNA from alignment at L-digitata_M_contig99264:1..357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99264.1.1 ID=mRNA_L-digitata_M_contig99264.1.1|Name=mRNA_L-digitata_M_contig99264.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=357bp|location=Sequence derived from alignment at L-digitata_M_contig99264:1..357+ (Laminaria digitata LdigPH10_18mv male)
CTGGCAATTCAGATGATTGCGGTATCCGAAGGTTTTGCGCTGGCTGACAA GCTCAATCTCGACAAGCAGAAGTTGTTTGATATTGCCTCTACGGCCACGA GCCAGTGCTGGTCTATGACGAGTTATTGCCCGGTCCCGGGACCTGTCCCG ACATCACCGGCGAACCGCGACTATGAAGCTGGGTTCACCGTGGCGATGAT GCTCAAGGATCTCAAGCTGGCGCAGGAAGCCGCCCAGACGGTTGATGCCA ATACCCCGTTGGGTGCACAGGCAACCGAAATCTACGACGCCTTTTCGGCA GCCGGTCATGACGGATTGGATTTTTCGGCAATCTTCAAACACATCGCAGA CGCTTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99264:1..357+

>mRNA_L-digitata_M_contig99264.1.1 ID=mRNA_L-digitata_M_contig99264.1.1|Name=mRNA_L-digitata_M_contig99264.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=345bp|location=Sequence derived from alignment at L-digitata_M_contig99264:1..357+ (Laminaria digitata LdigPH10_18mv male)
ATGATTGCGGTATCCGAAGGTTTTGCGCTGGCTGACAAGCTCAATCTCGA
CAAGCAGAAGTTGTTTGATATTGCCTCTACGGCCACGAGCCAGTGCTGGT
CTATGACGAGTTATTGCCCGGTCCCGGGACCTGTCCCGACATCACCGGCG
AACCGCGACTATGAAGCTGGGTTCACCGTGGCGATGATGCTCAAGGATCT
CAAGCTGGCGCAGGAAGCCGCCCAGACGGTTGATGCCAATACCCCGTTGG
GTGCACAGGCAACCGAAATCTACGACGCCTTTTCGGCAGCCGGTCATGAC
GGATTGGATTTTTCGGCAATCTTCAAACACATCGCAGACGCTTGA
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