mRNA_L-digitata_M_contig99264.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A2E8XQI5_9PROT (3-hydroxyisobutyrate dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XQI5_9PROT) HSP 1 Score: 190 bits (482), Expect = 4.100e-58 Identity = 94/115 (81.74%), Postives = 105/115 (91.30%), Query Frame = 1
Query: 1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFKHI 345
LAIQMI+VSEGFAL +KL LD Q LFDIASTATSQCW+MTSYCPVPGPVPTSPAN +Y+AGFTVAMMLKDLKLAQEAA TVDANTPLG QATE+YDA++AAG++ LDFSAI + I
Sbjct: 178 LAIQMISVSEGFALGEKLGLDTQALFDIASTATSQCWAMTSYCPVPGPVPTSPANNNYQAGFTVAMMLKDLKLAQEAAATVDANTPLGTQATEMYDAYAAAGNEDLDFSAIIRQI 292
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A2E7PMJ8_9PROT (3-hydroxyisobutyrate dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PMJ8_9PROT) HSP 1 Score: 188 bits (477), Expect = 2.340e-57 Identity = 91/115 (79.13%), Postives = 102/115 (88.70%), Query Frame = 1
Query: 1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFKHI 345
LAIQMIAVSEGF LA+KL L+ QKLFDI+STAT+QCW+MTSYCPVPGPVPTSPAN DY AGFTVAMMLKDLKL+QE A ANTPLGA ATE+YDA++ AGH+GLDFSAI +HI
Sbjct: 178 LAIQMIAVSEGFGLAEKLGLNAQKLFDISSTATAQCWAMTSYCPVPGPVPTSPANNDYAAGFTVAMMLKDLKLSQEVASITGANTPLGAHATELYDAYATAGHEGLDFSAIIRHI 292
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A2E7I2V1_9PROT (3-hydroxyisobutyrate dehydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I2V1_9PROT) HSP 1 Score: 179 bits (455), Expect = 4.900e-54 Identity = 87/117 (74.36%), Postives = 100/117 (85.47%), Query Frame = 1
Query: 1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFKHIAD 351
LAIQMIAVSEGF LA+KL LD QKLFDI+STAT+QCW+MTSYCPVPGPVP+SPAN Y AGFTVAMMLKDLKL+QE A ANTPLGA ATE++DA++ G++ LDFSAI +HI D
Sbjct: 178 LAIQMIAVSEGFGLAEKLGLDAQKLFDISSTATAQCWAMTSYCPVPGPVPSSPANNKYAAGFTVAMMLKDLKLSQEVASLTGANTPLGAHATELFDAYAGEGNENLDFSAIIRHITD 294
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A848W4Q6_9PROT (3-hydroxyisobutyrate dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W4Q6_9PROT) HSP 1 Score: 176 bits (447), Expect = 8.110e-53 Identity = 88/119 (73.95%), Postives = 104/119 (87.39%), Query Frame = 1
Query: 1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDG-LDFSAIFKHIADA 354
LAI+MIAVSEGF LA+KL+LD QKL+DI STATSQCW+MTSYCPVPGPVP+SPAN DY AGFTVAMMLKDLKL+QEAA + DANTPLGA AT++YD+F++ G + LDFSAI + I D+
Sbjct: 178 LAIEMIAVSEGFLLAEKLDLDAQKLWDIVSTATSQCWAMTSYCPVPGPVPSSPANNDYAAGFTVAMMLKDLKLSQEAAASADANTPLGAHATQLYDSFASLGDNAELDFSAIIRQIRDS 296
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A6N7JQ23_9PROT (3-hydroxyisobutyrate dehydrogenase n=2 Tax=Azospirillaceae TaxID=2829815 RepID=A0A6N7JQ23_9PROT) HSP 1 Score: 172 bits (436), Expect = 3.590e-51 Identity = 85/115 (73.91%), Postives = 96/115 (83.48%), Query Frame = 1
Query: 1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFKHI 345
L I MIAVSE FALADKL LD+QKLFDI+S ++ QCWS+TSYCPVPGPVPTSPANRDY+ GF V MMLKDLKLAQ+AA + A+TPLGAQA +Y FSAAGH GLDFSAI K +
Sbjct: 178 LGISMIAVSEAFALADKLGLDRQKLFDISSKSSGQCWSLTSYCPVPGPVPTSPANRDYQPGFAVDMMLKDLKLAQQAAASAGASTPLGAQAAALYQLFSAAGHGGLDFSAIVKML 292
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A2S6QH70_9PROT (3-hydroxyisobutyrate dehydrogenase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QH70_9PROT) HSP 1 Score: 170 bits (430), Expect = 2.960e-50 Identity = 85/116 (73.28%), Postives = 102/116 (87.93%), Query Frame = 1
Query: 1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAG-HDGLDFSAIFKHI 345
L I+MIAVSEGF LADKL LDKQKL+DIASTATSQCW+MT+YCPVPGPVP+SPANRDY+AGFT+AMMLKDLKL+QEAA+ A TPL A AT++Y++F++ +DGLDFS+I K I
Sbjct: 178 LGIEMIAVSEGFVLADKLGLDKQKLWDIASTATSQCWAMTNYCPVPGPVPSSPANRDYQAGFTIAMMLKDLKLSQEAAKNNGAFTPLAALATDLYESFASTNQNDGLDFSSIIKLI 293
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A2K9NHI1_9PROT (3-hydroxyisobutyrate dehydrogenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2K9NHI1_9PROT) HSP 1 Score: 169 bits (427), Expect = 8.160e-50 Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = 1
Query: 1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFKHI 345
L I MIAVSE FALADKL L++QKLFDI+ST++ QCWS+TSYCPVPGPVPTSPANRDY GF V MMLKDLKLAQ+AA + A+TPLGAQA +Y FSAAG+ GLDFSAI K +
Sbjct: 178 LGISMIAVSEAFALADKLGLERQKLFDISSTSSGQCWSLTSYCPVPGPVPTSPANRDYAPGFAVDMMLKDLKLAQQAAASSGASTPLGAQAASLYQLFSAAGNGGLDFSAIVKML 292
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: A0A346R1A0_9HYPH (3-hydroxyisobutyrate dehydrogenase n=1 Tax=Breoghania sp. L-A4 TaxID=2304600 RepID=A0A346R1A0_9HYPH) HSP 1 Score: 169 bits (428), Expect = 9.290e-50 Identity = 81/115 (70.43%), Postives = 96/115 (83.48%), Query Frame = 1
Query: 1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFKHI 345
L I MI VSE F LA+KL LD QKLFDIASTA+ QCWSMTSYCPVPGPVP SPANRDY+ GF AMMLKDLKLAQ+AA++VDA+TPLGA+A+ +Y F AG++G+DFS I K++
Sbjct: 191 LGISMIGVSEAFVLAEKLGLDHQKLFDIASTASGQCWSMTSYCPVPGPVPASPANRDYQPGFAAAMMLKDLKLAQDAARSVDASTPLGAEASALYSLFCNAGNEGMDFSGIIKYL 305
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: UPI001C6590B9 (NAD-binding protein n=1 Tax=Aerococcus urinae TaxID=1376 RepID=UPI001C6590B9) HSP 1 Score: 165 bits (417), Expect = 1.040e-49 Identity = 80/115 (69.57%), Postives = 93/115 (80.87%), Query Frame = 1
Query: 1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFKHI 345
L I MIAVSE F L +KL LD Q LF+I+STA+ QCWSMTSYCPVPGPVPTSPANRDY+ GFT AMMLKDL+LAQ+A++T A TPLGAQA ++Y A+GHDGLDFS + K I
Sbjct: 65 LGISMIAVSEAFVLGEKLGLDAQTLFNISSTASGQCWSMTSYCPVPGPVPTSPANRDYKPGFTAAMMLKDLRLAQDASKTAKAPTPLGAQAAQLYALMEASGHDGLDFSGVIKLI 179
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Match: UPI0003FDABBA (3-hydroxyisobutyrate dehydrogenase n=1 Tax=Niveispirillum irakense TaxID=34011 RepID=UPI0003FDABBA) HSP 1 Score: 168 bits (425), Expect = 1.630e-49 Identity = 83/113 (73.45%), Postives = 95/113 (84.07%), Query Frame = 1
Query: 1 LAIQMIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPANRDYEAGFTVAMMLKDLKLAQEAAQTVDANTPLGAQATEIYDAFSAAGHDGLDFSAIFK 339
L I MIAVSE FALADKL L++QKLFDI+ST++ QCWS+TSYCPVPGPVPTSPANRDY+ GF V MMLKDLKLAQ+AA + A TPLGAQA +Y FSAAG+ G+DFSAI K
Sbjct: 178 LGISMIAVSEAFALADKLGLERQKLFDISSTSSGQCWSLTSYCPVPGPVPTSPANRDYQPGFAVDMMLKDLKLAQQAAASAGAATPLGAQAAALYQLFSAAGNGGMDFSAIVK 290 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99264.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig99264.1.1 >prot_L-digitata_M_contig99264.1.1 ID=prot_L-digitata_M_contig99264.1.1|Name=mRNA_L-digitata_M_contig99264.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=115bp MIAVSEGFALADKLNLDKQKLFDIASTATSQCWSMTSYCPVPGPVPTSPAback to top mRNA from alignment at L-digitata_M_contig99264:1..357+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig99264.1.1 ID=mRNA_L-digitata_M_contig99264.1.1|Name=mRNA_L-digitata_M_contig99264.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=357bp|location=Sequence derived from alignment at L-digitata_M_contig99264:1..357+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig99264:1..357+ >mRNA_L-digitata_M_contig99264.1.1 ID=mRNA_L-digitata_M_contig99264.1.1|Name=mRNA_L-digitata_M_contig99264.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=345bp|location=Sequence derived from alignment at L-digitata_M_contig99264:1..357+ (Laminaria digitata LdigPH10_18mv male)back to top |