mRNA_L-digitata_M_contig991.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig991.1.1
Unique NamemRNA_L-digitata_M_contig991.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig991.1.1 vs. uniprot
Match: D7G7N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N7_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 7.670e-44
Identity = 89/131 (67.94%), Postives = 97/131 (74.05%), Query Frame = 1 
Query:  316 WAEERFPGCSTVVSPVTRLSGLLAEVWETLADPSAVQAGKPRVLAFPDCPAVASPRGLQSLYEHLEVCQDACEQFGTTVSIVPHPKGGNSDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDRSLLDDD 708
            WAE +FPGCSTV+S  TRLSGLLA+VWETLADPSA +A +PRVL FPDCPAVA  RGLQ+LYEHLEVCQDACEQFGT VSIVPHP+GG + AP                       XXXXXXIDRSLLDDD
Sbjct:   20 WAESQFPGCSTVLSKATRLSGLLADVWETLADPSAAEAERPRVLMFPDCPAVAEARGLQNLYEHLEVCQDACEQFGTMVSIVPHPRGGRTGAPAPSLVVQVVPGAGGGDDFGYDPDXXXXXXIDRSLLDDD 150
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BLAST of mRNA_L-digitata_M_contig991.1.1 vs. uniprot
Match: A0A6H5L2Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q2_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.330e-43
Identity = 90/131 (68.70%), Postives = 98/131 (74.81%), Query Frame = 1 
Query:  316 WAEERFPGCSTVVSPVTRLSGLLAEVWETLADPSAVQAGKPRVLAFPDCPAVASPRGLQSLYEHLEVCQDACEQFGTTVSIVPHPKGGNSDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDRSLLDDD 708
            WAE +FPGCSTV+S  TRLSGLLA+VWETLADPSAV+A +PRVL FPDCPAVA  RGLQ+LYEHLEVCQDACEQFGT VSIVPHP+GG + AP                       XXXXXXIDRSLLDDD
Sbjct:   82 WAESQFPGCSTVLSKATRLSGLLADVWETLADPSAVEAERPRVLMFPDCPAVAEARGLQNLYEHLEVCQDACEQFGTMVSIVPHPRGGKNGAPAPSLVVQVVPGAGGGDDFGYDPDXXXXXXIDRSLLDDD 212
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig991.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7N7_ECTSI7.670e-4467.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2Q2_9PHAE1.330e-4368.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig991contigL-digitata_M_contig991:14031..19150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G7N7
PFAMsDUF1415
Model size719
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.26e-44
EggNOG OGsCOG3310@1|root,2RXZW@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF1415
Ec32 orthologEc-22_001640.1
DescriptionProtein of unknown function (DUF1415)
Cds size717
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408648.6988373-CDS-L-digitata_M_contig991:14030..143901682408648.6988373-CDS-L-digitata_M_contig991:14030..14390Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig991 14031..14390 +
1682408648.713513-CDS-L-digitata_M_contig991:16823..169761682408648.713513-CDS-L-digitata_M_contig991:16823..16976Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig991 16824..16976 +
1682408648.7263882-CDS-L-digitata_M_contig991:17843..179391682408648.7263882-CDS-L-digitata_M_contig991:17843..17939Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig991 17844..17939 +
1682408648.7377396-CDS-L-digitata_M_contig991:19042..191501682408648.7377396-CDS-L-digitata_M_contig991:19042..19150Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig991 19043..19150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig991.1.1prot_L-digitata_M_contig991.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig991 14031..19150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig991.1.1

>prot_L-digitata_M_contig991.1.1 ID=prot_L-digitata_M_contig991.1.1|Name=mRNA_L-digitata_M_contig991.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=239bp
LIAKPRARPRQRVAMSSTICTIALLTASISPFSHGFVATSPPTSSTPRRS
AHNFRLGGGTPHVAPNVAAESRQRLPGHASSLRRSAGRAMAMSAATESSA
TASNVWAEERFPGCSTVVSPVTRLSGLLAEVWETLADPSAVQAGKPRVLA
FPDCPAVASPRGLQSLYEHLEVCQDACEQFGTTVSIVPHPKGGNSDAPAP
ALVVQVVAGAGGEDDFDYDPDWDGDWDIDRSLLDDDDDE
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mRNA from alignment at L-digitata_M_contig991:14031..19150+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig991.1.1 ID=mRNA_L-digitata_M_contig991.1.1|Name=mRNA_L-digitata_M_contig991.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=5120bp|location=Sequence derived from alignment at L-digitata_M_contig991:14031..19150+ (Laminaria digitata LdigPH10_18mv male)
CTGATAGCCAAACCTCGGGCCAGACCTAGGCAGCGTGTTGCCATGTCATC
CACAATTTGCACGATCGCCCTGCTGACTGCCTCCATTTCTCCGTTCTCTC
ACGGGTTCGTGGCAACCTCGCCACCGACTTCCTCTACCCCGAGGAGATCC
GCACATAACTTTCGACTAGGCGGTGGCACCCCTCATGTTGCACCAAACGT
GGCTGCCGAGAGTAGGCAGCGTCTACCCGGCCATGCCTCATCACTTCGGC
GGAGTGCAGGCAGGGCAATGGCCATGTCTGCGGCCACGGAGAGTTCAGCG
ACGGCGTCCAACGTGTGGGCCGAAGAAAGGTTTCCAGGCTGCTCTACGGT
CGTATCACCGGTGAGATCATGCTCATATCATACCAGGTACAGAGTACCAG
GCTGGCATGTTTGGCCATTAGACTACAGCAGTACCAGGCTGGCATACTTG
TACTGGCACACTCGTAGTGGTACTGCTGTAAGCGTAGGGTAGGGTGGGTA
GGTTCGGGTTGCGAGTTTCGACGCGCCGTGTACGCTCCAGATGCCCAACT
GATAGCTGATAGGCCTTGACTGGCATAGGGTCGGCTTCCGTAAGACCAGA
CGGCTTCACGACGCTGTACGCCCACGTATTGCGGGGCTGTGCGCCTTGCT
CAGTCTACCAGTACATGTTATGTTTGTGCGGCGCATATCACACGGAACGG
TGGTGGCGAGTTCCGGTACGAGTCATGTGAGCTGCTGCCGTGTCATTCGC
CATATGGTGGCGGTGGAATCCAGCGTACGAGTACTGTACTGCTGTAAGCT
GTACCAGGTAGGTAACACGCGATCGGTGCCACAAGGAAGGGGATTCGCCC
ATCCTGCACCACACTGACACACTTGGTGTGGGTGCTTGATGGGTGCTTGA
AGGCTCTCGTGGTTTCTTGCACCAGCAAGCACCTGCATTGGGCATTGGAC
GAGACACCGCGCTTGCATTTCGCGTAAGCGGCGCTCCAACCCAGTGCTTA
GACAACGCACCAGTACTGCAGCTGCATGATACGAATACAAGTACTCGTAC
GATAGATAGCCTGTTCGAGTTGACCGGGCCAGGCATCTGCAACCTTGAGG
CAACGCCTATGATATACTGGTAGACCAGACGCCAAACGTGTACGATTCGT
CCCTGGCAAATTGAACGGGGTTGCATTGTTGCTCGCACCCTGCTACCAAC
TACCGGCCATGTTTCGGGGGGGCACCTGCAGCAACACTCGTACTCGTGAG
CATTAGCATTGAAAGTGCTGATGCTCCTATTGGAGCTATCATGGTGTCAT
GCTATCGTGGCAGGCGCAGACAGGGACAAGAGCAGCAGCGAAGGCATGCA
TGAAGGCAAGGACAACTTAATACTGCTGTACGACCTGTTTGCGCGCATCA
AAACCGCCCAAACGACCAGGGGGCGTAGTAACTTCGGAACGCGCCTTGGG
GCAAGAGACCATGCCCCCAACACCGAGCAACCGCCAACTGTCGCCGCGGC
CGGCCCCTTGTCGTCCCAAGCGTCGGAACAAGGCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCTCTCAAATTTT
GTCACATCCTTGCCTACTACGTAAACCTATCAGCAGCTGCACCCTCGTTT
TGGGGACAAAGTACTTGATTTAAGAGTGCAGCAGCAGTAGGCTAACGTAA
CCCCGTTACAACTGCAACCGCGTTCCGGATACAGACTACTTGGAATAATT
GTTGGATACAGGTGGCAAGAGAGCAAAAGATAATAGAGCTAAACTCTAAA
CTCCAACTGGATTTCGCATCCAAAGACCAAACGCCACCCGATTGATTGTG
GTGTGTGTGGCTTTGAACAGGTGACGAGACTGTCAGGATAGTTGTTGGAT
GCAGTTTGCAAACCGGTACAAGATAGAAGAGCTAAATAATAAACAACTGG
AAATCGCACCCAAACTCCAAACACCAAACGCCACCGGACTGGTTGTGGTG
TGTGTGGCTTTGAACAGGTGACGAGACTGTCAGGATAATGGTTGGATACA
GTTTGCAAAACGGTAAAAGAGAAAAAAGCTAAACTCTGAACTCCAACTGG
AAATCGCACCCAAACACCAAACACCACCCGATTGGTTGCGGTGTGTGTCG
CTTTGAACAGGTGACGAGACTATCAGGATGTTTGTTGTATACAGTTTGCA
AAACGCTCAAAGATAAAGAGAGAGCTAAATTCTGAGTTCCAACTGGAAAT
CACATCCAAACACCAAACGCCACCCGACAGGTTGACCTCCAACTGGAAAT
CACATCCAAACGTCAGAACGCCACCCGATTGGTTGAACTCCAACTGGAAA
TCGCACCCACACACAAACACCACCCGATTGGTTGCGGTGTTTGTGGCTTT
GAACAGGCGACGAGACTATCAGGATAATCGTTGGATACAGTTTGCCAGAC
AATAAAAAATCAAAGAGAGCTAAATTTTGAATTTCCAACTGGAAATCACA
TCCAAACAGCAAACGCCACCCGATTGGTTGACCTCCAACTGGAAATCACA
TCCAAACACCAAAACGCCACCCGATTGGTTGACCTCCAACTGGAATTCAC
ATCCTACCAACAACACGCCACCCGATTGGTTGTGGCGTGTGTGCGACTTG
AGCAGGTGACGAGACTGTCAGGATATTTGTTGGATACACAGTTTGCAAAA
CGGTAAAACATAAAAGAGCTAAATTACAAACTCCAACTGGAAATAGCATC
TATTAAACACCAGACGCCATCCGATTGGTTGTGGCTTGAGCAGGTGACGA
GACTGTCAGGCCTGCTTGCGGAGGTGTGGGAGACGCTAGCCGACCCTTCC
GCCGTGCAGGCAGGCAAACCGCGCGTGCTGGCGTTCCCCGACTGCCCCGC
TGTCGCCAGCCCCCGAGGCCTGCAAAGCTTGTACGAACACCTGGAGGTAA
GAAAAATCGCACAAGCATTAGTCTTATCCACTTTAGGACTGCACTCCCGT
TTTGGGGACGCATTACTTGGAATTAGAGTCAGATATAGGGGTCTGTATAG
TGCAGTAGGGGTTTTTAGGACTGTACTCCCGTTTTGGGGACATATTACTT
GGAATTAGAGTCATATATAGAGGTCTGTACAGTGCAGTAGTAAAAGGGTT
GAGACCAAGTTATACGGGTAGGTGGTTCTGGGTGTGACAAGAAAAAGGGG
GGAGTTTCGTGGCCGTATACGGACGAGGCCCGCGGTAACTGGCTTTGTCT
CTGTTCCCGATCACTTTTAGCTGTTGTAAAACAGCATTAGATGTCAAACA
TGCCTCCGCAACAACAGCAGTACCATTCTCATGGTATCGCATGAGGTTCT
CAGCGTGCGACCAGCCTAACAGGTGGCCCATGTTGATTTTACCAGACATC
CTCCGAGTCCACCGTTGGGGTTTATCTTCCAAGCCTACCGTATACCACTC
TGTCCGGAAATATAAGCACATTTTTATACTAATTTTAATATAAAAAGGTG
CTTATATTTCCGGAACGGCTTTCTCCTAAACTGGGGCGGGGCACACACAA
CGAAACGTCGGCGTTGGAAATATATCGTCGAGACCTTTCCATAGACACAT
CGCTCGGTGGTTGCACCCTCCCCATTGTAGAGAAAATCGGCTTGGAAAAT
TCAGTCCGAGGGGGTGTGCGATCTTGCGTGCTGTGCGGTACCTTCTCGGT
GGGTCTGTTGTGCCCTGCTAACATCGCAGCCCTAACCAACCTTCGTTTTT
TTTTTGTAATTGATTTTGGGATGCGCGTATCGTTTCCGCCTTCGAAAACT
TGAAACCCCCCAGGTGTGCCAGGATGCCTGCGAACAGTTCGGGACGACGG
TATCGATCGTGCCCCACCCCAAAGGCGGAAACTCCGACGCGCCCGCTCCT
GCACTTGTGGTGAGATGTTAATCTTGGGAATCCATCATTCGTAACCAACC
GAGGTATTTTCGGGGGCCCACAGTAATCAGAACCCATTATGGACGCCAAA
GATTGTAATTTCTCCTGGTGCTTATTACCCGACTTGGTCCCTGATTGCTA
TGCTCCCCCGTAAAATAGTACGGGAGCCATGGTATGGTAGAAGGGGTGTT
TTTGGGCCCAACGGTTTCTGACTGATGGGGGCCCCCTCTACTGACGAACT
ACCCGAACAAAATGTGAACAACCGCGGTCGTGTTTTTATTTACTCTCTTG
CACCCTGTTTAGCAGGGTGCGCGAACCTTTTTTTCCTCCGTAAGAAAGAC
GGGTTTTTCGAGGTATGGCGCTCCTCATGTTTGGGTACACCCCCATATAC
GCTACCGTAGCGTGATTCACGGGCGTGAGATTTGACCTTGAAGAGCGGTT
TACCTTTCCGCGAGGCGATGGCTGGCAGTGGTGGTGGGCATTTGGTGCTA
GGTTCGAGTTACCGCAACCGCACCCCACGGCGGCGGCGCATCTACCATGC
AACGAACTGCCAAGTGCTATGATACAAGTGTACCAGGTACCTATTAATAG
TACTTCATATGCGAGTTTTTGTACGATGTTTCGGTGAAGTTGGTATTCGT
TGCCCAGAGCGAAGCCTTATCTCACTCGGGCTTGACTCTCTCGTGCGTCT
GGTAATACCCCCCCCTCCCCGGGGCATAGGGAGTACACCGCCCCCCCGGA
CATTCGGTGCACTAGTTATATAAGTAGCGAGAAAACGATCGCTATCCTAG
GAGATAGATGGTGGCCACAGACGGCAAAACACGAAGGGGATAAGATTAGC
GAAAAAAAAACTATCAGGTATGTCATAAGATGATTAAAAAAAAAGGAGCG
CCCAAATGTTGAGGTGTCTCTATTAAGAGTAGGAATGGTGCTCCGTCTCG
AAAGGGATGTGTTGTCATTGGCAAAATGACTAAGGCAAACACTAAATGAA
TACCCCCCACCCTTCCCGACCTGGACATAAGCATGCCACCAAGCGCTACA
AGACAGCATCTGGCACCTAATATAATTACCGGGTTTTTTTTTTGCGAATT
TTGCGGGAGAAGGTGCAAGTCGTTGCCGGTGCCGGAGGGGAAGACGATTT
CGATTACGACCCCGACTGGGATGGGGACTGGGACATCGACCGCTCTCTCC
TGGACGACGACGATGACGAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig991:14031..19150+

>mRNA_L-digitata_M_contig991.1.1 ID=mRNA_L-digitata_M_contig991.1.1|Name=mRNA_L-digitata_M_contig991.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=717bp|location=Sequence derived from alignment at L-digitata_M_contig991:14031..19150+ (Laminaria digitata LdigPH10_18mv male)
CTGATAGCCAAACCTCGGGCCAGACCTAGGCAGCGTGTTGCCATGTCATC
CACAATTTGCACGATCGCCCTGCTGACTGCCTCCATTTCTCCGTTCTCTC
ACGGGTTCGTGGCAACCTCGCCACCGACTTCCTCTACCCCGAGGAGATCC
GCACATAACTTTCGACTAGGCGGTGGCACCCCTCATGTTGCACCAAACGT
GGCTGCCGAGAGTAGGCAGCGTCTACCCGGCCATGCCTCATCACTTCGGC
GGAGTGCAGGCAGGGCAATGGCCATGTCTGCGGCCACGGAGAGTTCAGCG
ACGGCGTCCAACGTGTGGGCCGAAGAAAGGTTTCCAGGCTGCTCTACGGT
CGTATCACCGGTGACGAGACTGTCAGGCCTGCTTGCGGAGGTGTGGGAGA
CGCTAGCCGACCCTTCCGCCGTGCAGGCAGGCAAACCGCGCGTGCTGGCG
TTCCCCGACTGCCCCGCTGTCGCCAGCCCCCGAGGCCTGCAAAGCTTGTA
CGAACACCTGGAGGTGTGCCAGGATGCCTGCGAACAGTTCGGGACGACGG
TATCGATCGTGCCCCACCCCAAAGGCGGAAACTCCGACGCGCCCGCTCCT
GCACTTGTGGTGCAAGTCGTTGCCGGTGCCGGAGGGGAAGACGATTTCGA
TTACGACCCCGACTGGGATGGGGACTGGGACATCGACCGCTCTCTCCTGG
ACGACGACGATGACGAG
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