mRNA_L-digitata_M_contig99002.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99002.3.1
Unique NamemRNA_L-digitata_M_contig99002.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99002.3.1 vs. uniprot
Match: A0A6N2D2D9_9DELT (FHA domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A6N2D2D9_9DELT)

HSP 1 Score: 49.7 bits (117), Expect = 7.710e-6
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    7 WTLRGGKLTLGRDPERCDIPLDDTKASREHAQLV 108
            W+ RG  L LGRDPERCDI LDD + SREHA++ 
Sbjct:  363 WSTRG-VLVLGRDPERCDIVLDDVQISREHARIA 395
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99002.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6N2D2D9_9DELT7.710e-664.71FHA domain-containing protein n=1 Tax=Deltaproteob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99002contigL-digitata_M_contig99002:837..947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog497965.Cyan7822_1173
PFAMsFHA,PrsW-protease
Model size111
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000677
EggNOG OGsCOG1716@1|root,COG2339@1|root,COG1716@2|Bacteria,COG2339@2|Bacteria,1G14Z@1117|Cyanobacteria,3KHG4@43988|Cyanothece
DescriptionFHA domain containing protein
Cds size111
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408648.0238056-CDS-L-digitata_M_contig99002:836..9471682408648.0238056-CDS-L-digitata_M_contig99002:836..947Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99002 837..947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99002.3.1prot_L-digitata_M_contig99002.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99002 837..947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99002.3.1

>prot_L-digitata_M_contig99002.3.1 ID=prot_L-digitata_M_contig99002.3.1|Name=mRNA_L-digitata_M_contig99002.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=37bp
RRWTLRGGKLTLGRDPERCDIPLDDTKASREHAQLVY
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mRNA from alignment at L-digitata_M_contig99002:837..947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99002.3.1 ID=mRNA_L-digitata_M_contig99002.3.1|Name=mRNA_L-digitata_M_contig99002.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=111bp|location=Sequence derived from alignment at L-digitata_M_contig99002:837..947+ (Laminaria digitata LdigPH10_18mv male)
CGCCGTTGGACCTTACGCGGCGGCAAGCTCACCCTGGGCCGCGACCCCGA
GCGCTGCGACATCCCCCTCGACGATACCAAGGCGAGCCGGGAGCACGCAC
AGCTGGTCTAC
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Coding sequence (CDS) from alignment at L-digitata_M_contig99002:837..947+

>mRNA_L-digitata_M_contig99002.3.1 ID=mRNA_L-digitata_M_contig99002.3.1|Name=mRNA_L-digitata_M_contig99002.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=111bp|location=Sequence derived from alignment at L-digitata_M_contig99002:837..947+ (Laminaria digitata LdigPH10_18mv male)
CGCCGTTGGACCTTACGCGGCGGCAAGCTCACCCTGGGCCGCGACCCCGA
GCGCTGCGACATCCCCCTCGACGATACCAAGGCGAGCCGGGAGCACGCAC
AGCTGGTCTAC
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