mRNA_L-digitata_M_contig98604.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig98604.1.1 vs. uniprot
Match: A0A222E5L9_9RHOB (Uracil-DNA glycosylase n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E5L9_9RHOB) HSP 1 Score: 446 bits (1146), Expect = 9.460e-157 Identity = 214/222 (96.40%), Postives = 216/222 (97.30%), Query Frame = 3
Query: 276 VSVTPPTPPKNWQHLPFFAQELPRIAAHLAQRDAQVLPPAPQIFAALEACPPQATRVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSLTNIYKEMQEDLGAIPPNGDLRFWAEQGVLLLNTALTVEAGKAGVHAKLGWSRLTEQVLAALSDQPRAFLLWGAHAQGFAKHITGPDHLILTSPHPSPLSARRGFFGSRPFSRINDWLKDGGQTPINWTTPERP 941
+SVTPPTPPKNWQHL FFAQELPRIAAHLAQ DA VLPPAPQIFAALEACPPQATRVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSLTNIYKEMQEDLGAIPPNGDLRFWAEQGVLLLNTALTVEAGKAG HAKLGWS LTEQVLAALS+QPRAFLLWGAHAQGFAKHI GPDHLILTSPHPSPLSARRGFFGSRPFSRINDWLKDGGQTPINWTTPERP
Sbjct: 1 MSVTPPTPPKNWQHLLFFAQELPRIAAHLAQSDAPVLPPAPQIFAALEACPPQATRVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSLTNIYKEMQEDLGAIPPNGDLRFWAEQGVLLLNTALTVEAGKAGAHAKLGWSSLTEQVLAALSNQPRAFLLWGAHAQGFAKHIAGPDHLILTSPHPSPLSARRGFFGSRPFSRINDWLKDGGQTPINWTTPERP 222
BLAST of mRNA_L-digitata_M_contig98604.1.1 vs. uniprot
Match: A0A0B3SAR8_9RHOB (Uracil-DNA glycosylase n=10 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3SAR8_9RHOB) HSP 1 Score: 385 bits (989), Expect = 7.040e-133 Identity = 181/216 (83.80%), Postives = 195/216 (90.28%), Query Frame = 3
Query: 294 TPPKNWQHLPFFAQELPRIAAHLAQRDAQVLPPAPQIFAALEACPPQATRVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSLTNIYKEMQEDLGAIPPNGDLRFWAEQGVLLLNTALTVEAGKAGVHAKLGWSRLTEQVLAALSDQPRAFLLWGAHAQGFAKHITGPDHLILTSPHPSPLSARRGFFGSRPFSRINDWLKDGGQTPINWTTPERP 941
TPP NW+HLPFF Q+LPRIA LAQ DAQVLPPA Q+F+AL+ACPP TRVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSL NI+KEM +DLGA P GDL FWA+QGVLLLNTALTVEAGKAG HAKLGW+RLTEQVLAALSD+PRAFLLWG HAQGFA+HITG DHL+L+S HPSPLSARRGFFGSRPFSRINDWL D GQTPINWTTP+ P
Sbjct: 7 TPPDNWRHLPFFVQDLPRIAGQLAQSDAQVLPPAHQVFSALDACPPDRTRVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSLNNIFKEMTDDLGACPDTGDLHFWADQGVLLLNTALTVEAGKAGAHAKLGWARLTEQVLAALSDRPRAFLLWGGHAQGFARHITGGDHLVLSSAHPSPLSARRGFFGSRPFSRINDWLMDKGQTPINWTTPKGP 222
BLAST of mRNA_L-digitata_M_contig98604.1.1 vs. uniprot
Match: A0A238L0G9_9RHOB (Uracil-DNA glycosylase n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238L0G9_9RHOB) HSP 1 Score: 384 bits (986), Expect = 2.010e-132 Identity = 182/218 (83.49%), Postives = 197/218 (90.37%), Query Frame = 3
Query: 282 VTPPTPPKNWQHLPFFAQELPRIAAHLAQRDAQVLPPAPQIFAALEACPPQATRVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSLTNIYKEMQEDLGAIPPNGDLRFWAEQGVLLLNTALTVEAGKAGVHAKLGWSRLTEQVLAALSDQPRAFLLWGAHAQGFAKHITGPDHLILTSPHPSPLSARRGFFGSRPFSRINDWLKDGGQTPINWTTPE 935
+T PP++W HLPFFAQ+LPRIAA LA AQVLPPAP +FAAL+ACPP+ATRVVILGQDPYPTPGHAHG AFSV P VRPLPRSLTNI+KEMQ+DLGA PP+GDLRFWA QGVLLLNTALTVEAG+AGVHA LGWSRLTEQVLAALSD+PRAF+LWG HAQGFA HI+GP HLIL S HPSPLSARRGFFGSRPFSR+NDWLKD GQTPINWTTPE
Sbjct: 1 MTALVPPRSWAHLPFFAQDLPRIAAALATSTAQVLPPAPHVFAALDACPPEATRVVILGQDPYPTPGHAHGFAFSVAPQVRPLPRSLTNIFKEMQDDLGARPPDGDLRFWATQGVLLLNTALTVEAGRAGVHANLGWSRLTEQVLAALSDRPRAFVLWGNHAQGFAPHISGPGHLILNSAHPSPLSARRGFFGSRPFSRVNDWLKDKGQTPINWTTPE 218
BLAST of mRNA_L-digitata_M_contig98604.1.1 vs. uniprot
Match: UPI000EF50915 (uracil-DNA glycosylase n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI000EF50915) HSP 1 Score: 363 bits (933), Expect = 2.170e-124 Identity = 173/216 (80.09%), Postives = 182/216 (84.26%), Query Frame = 3
Query: 294 TPPKNWQHLPFFAQELPRIAAHLAQRDAQVLPPAPQIFAALEACPPQATRVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSLTNIYKEMQEDLGAIPPNGDLRFWAEQGVLLLNTALTVEAGKAGVHAKLGWSRLTEQVLAALSDQPRAFLLWGAHAQGFAKHITGPDHLILTSPHPSPLSARRGFFGSRPFSRINDWLKDGGQTPINWTTPERP 941
TPP WQ LPFF QELP I AHLAQ LPPA Q+FAAL ACPP+ TRVVILGQDPYP PGHAHGLAFSVEPDVRPLPRSLTNIYKE+Q+DLGA PP+GDL FWA QGVLLLNTALTV G+AG HAKLGWS LTEQVL L D PRAF+LWG HAQGFAKH+T PDHLIL S HPSPLSAR+GFFGSRPFSRINDWLK G TPINWTTPE P
Sbjct: 5 TPPATWQELPFFVQELPAIEAHLAQNAQNHLPPAHQVFAALSACPPETTRVVILGQDPYPKPGHAHGLAFSVEPDVRPLPRSLTNIYKELQDDLGACPPDGDLHFWANQGVLLLNTALTVLPGQAGAHAKLGWSTLTEQVLTKLDDSPRAFVLWGNHAQGFAKHLTHPDHLILRSAHPSPLSARKGFFGSRPFSRINDWLKARGDTPINWTTPEAP 220
BLAST of mRNA_L-digitata_M_contig98604.1.1 vs. uniprot
Match: UPI001C95F55B (uracil-DNA glycosylase n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C95F55B) HSP 1 Score: 363 bits (933), Expect = 2.250e-124 Identity = 175/214 (81.78%), Postives = 190/214 (88.79%), Query Frame = 3
Query: 297 PPKNWQHLPFFAQELPRIAAHLAQRDAQVLPPAPQIFAALEACPPQATRVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSLTNIYKEMQED----LGAIPPNGDLRFWAEQGVLLLNTALTVEAGKAGVHAKLGWSRLTEQVLAALSDQPRAFLLWGAHAQGFAKHITGPDHLILTSPHPSPLSARRGFFGSRPFSRINDWLKDGGQTPINWT 926
PP++W+HLPFFAQ+LPRIA +LAQR+AQ+LPPAP++FAAL+AC P+ATRVVILGQDPYPTPGHAHGLAFSVEP+VRPLPRSLTNIYK LG P NGDLR WA QGVLLLNTALTVEAGKAG HA+LGWS+LTEQVLA LSD PRAFLLWG HAQGFA+HITG HLILTS HPSPLSARRGFFGSRPFSRINDWLKD GQTPINWT
Sbjct: 3 PPEHWRHLPFFAQDLPRIAENLAQRNAQILPPAPKVFAALDACAPEATRVVILGQDPYPTPGHAHGLAFSVEPEVRPLPRSLTNIYKXXXXXXXXXLGGAPENGDLRPWASQGVLLLNTALTVEAGKAGAHARLGWSKLTEQVLATLSDHPRAFLLWGNHAQGFARHITGDGHLILTSAHPSPLSARRGFFGSRPFSRINDWLKDRGQTPINWT 216
BLAST of mRNA_L-digitata_M_contig98604.1.1 vs. uniprot
Match: A0A1P8UYZ1_9RHOB (Uracil-DNA glycosylase n=7 Tax=Salipiger TaxID=263377 RepID=A0A1P8UYZ1_9RHOB) HSP 1 Score: 358 bits (919), Expect = 2.360e-122 Identity = 168/213 (78.87%), Postives = 184/213 (86.38%), Query Frame = 3
Query: 294 TPPKNWQHLPFFAQELPRIAAHLAQRDAQVLPPAPQIFAALEACPPQATRVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSLTNIYKEMQEDLGAIPPNGDLRFWAEQGVLLLNTALTVEAGKAGVHAKLGWSRLTEQVLAALSDQPRAFLLWGAHAQGFAKHITGPDHLILTSPHPSPLSARRGFFGSRPFSRINDWLKDGGQTPINWTTP 932
TPP W HLPFF Q+LPRI A LA+ Q+LPPAPQIFAAL+AC P+A RVVILGQDPYPTPGHAHGLAFSV PDVRPLPRSL+NIYKE+QE+ GA PPNGDLRFWA QGVLLLNTALTV AG AG HA+LGWS+LT QV+ +LS+ PRAF+LWG HAQGFAKHI GPDHLIL S HPSPLSARRGFFGSRPFSR+N+WL G TPINWTTP
Sbjct: 2 TPPPAWAHLPFFTQDLPRIEAALAEDGRQILPPAPQIFAALDACAPEAVRVVILGQDPYPTPGHAHGLAFSVAPDVRPLPRSLSNIYKELQEEFGACPPNGDLRFWAAQGVLLLNTALTVPAGSAGAHARLGWSKLTAQVIESLSEHPRAFILWGNHAQGFAKHIHGPDHLILRSAHPSPLSARRGFFGSRPFSRVNEWLIARGDTPINWTTP 214
BLAST of mRNA_L-digitata_M_contig98604.1.1 vs. uniprot
Match: UPI001A8FD7DC (uracil-DNA glycosylase n=1 Tax=Salipiger abyssi TaxID=1250539 RepID=UPI001A8FD7DC) HSP 1 Score: 358 bits (919), Expect = 2.360e-122 Identity = 168/213 (78.87%), Postives = 184/213 (86.38%), Query Frame = 3
Query: 294 TPPKNWQHLPFFAQELPRIAAHLAQRDAQVLPPAPQIFAALEACPPQATRVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSLTNIYKEMQEDLGAIPPNGDLRFWAEQGVLLLNTALTVEAGKAGVHAKLGWSRLTEQVLAALSDQPRAFLLWGAHAQGFAKHITGPDHLILTSPHPSPLSARRGFFGSRPFSRINDWLKDGGQTPINWTTP 932
TPP W HLPFF Q+LPRI A LA+ Q+LPPAPQIFAAL+AC P+A RVVILGQDPYPTPGHAHGLAFSV PDVRPLPRSL+NIYKE+ E+ GA PPNGDLRFWA QGVLLLNTALTV AG AG HA+LGWS+LT QV+ +LS+QPRAF+LWG HAQGFAKHI GPDHLIL S HPSPLSARRGFFGSRPFSR+N+WL G TPINWTTP
Sbjct: 2 TPPPAWAHLPFFTQDLPRIEAALAEDGRQILPPAPQIFAALDACAPEAVRVVILGQDPYPTPGHAHGLAFSVAPDVRPLPRSLSNIYKELHEEFGACPPNGDLRFWAAQGVLLLNTALTVPAGSAGAHARLGWSKLTAQVIESLSEQPRAFILWGNHAQGFAKHIHGPDHLILRSAHPSPLSARRGFFGSRPFSRVNEWLIARGDTPINWTTP 214
BLAST of mRNA_L-digitata_M_contig98604.1.1 vs. uniprot
Match: A0A0P1GQK5_9RHOB (Uracil-DNA glycosylase n=2 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0P1GQK5_9RHOB) HSP 1 Score: 352 bits (903), Expect = 8.500e-120 Identity = 171/217 (78.80%), Postives = 182/217 (83.87%), Query Frame = 3
Query: 294 TPPKNWQHLPFFAQELPRIAAHLAQ----RDAQVLPPAPQIFAALEACPPQATRVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSLTNIYKEMQEDLGAIPPNGDLRFWAEQGVLLLNTALTVEAGKAGVHAKLGWSRLTEQVLAALSDQPRAFLLWGAHAQGFAKHITGPDHLILTSPHPSPLSARRGFFGSRPFSRINDWLKDGGQTPINWTTP 932
TPP WQHLPFF Q+LP+IAA LAQ D LPPA Q+FAAL+AC P T+VVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSL NIYKE+ + GA+PPNGDL FWAEQGVLLLNTALTV G+AGVHAKLGW+ LT QVLA LS PRAFLLWG HAQGFAKHITG +HLILTS HPSPLSARRGFFGSRPFSRIN WLK G TPINWTTP
Sbjct: 5 TPPATWQHLPFFVQDLPQIAADLAQSAQLNDQGHLPPAGQVFAALDACAPAQTKVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSLQNIYKELDAEFGAVPPNGDLHFWAEQGVLLLNTALTVLPGQAGVHAKLGWAELTRQVLADLSQSPRAFLLWGNHAQGFAKHITGDNHLILTSAHPSPLSARRGFFGSRPFSRINAWLKANGDTPINWTTP 221
BLAST of mRNA_L-digitata_M_contig98604.1.1 vs. uniprot
Match: A0A0W7WQE5_9RHOB (Uracil-DNA glycosylase n=1 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WQE5_9RHOB) HSP 1 Score: 349 bits (895), Expect = 1.300e-118 Identity = 167/213 (78.40%), Postives = 182/213 (85.45%), Query Frame = 3
Query: 294 TPPKNWQHLPFFAQELPRIAAHLAQRDAQVLPPAPQIFAALEACPPQATRVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSLTNIYKEMQEDLGAIPPNGDLRFWAEQGVLLLNTALTVEAGKAGVHAKLGWSRLTEQVLAALSDQPRAFLLWGAHAQGFAKHITGPDHLILTSPHPSPLSARRGFFGSRPFSRINDWLKDGGQTPINWTTP 932
TPP W+HL FF ++LP IAA L+Q DA VLPPA Q+FAAL+ACPP RVVILGQDPYPT GHAHG AFSV P RPLPRSLTNI++EM EDLGA PP+GDLRFWA QGVLLLNTALTV AG+AG HA+LGWSRLTE+VLA LSD+PRAFLLWG HAQGFA+HITG DHL+L S HPSPLSARRGFFGSRPFSRINDWLK G TPINWT P
Sbjct: 6 TPPA-WRHLRFFQRDLPEIAARLSQEDAPVLPPAEQVFAALDACPPDRVRVVILGQDPYPTQGHAHGFAFSVAPGTRPLPRSLTNIFREMTEDLGACPPDGDLRFWAPQGVLLLNTALTVPAGRAGGHARLGWSRLTEEVLATLSDRPRAFLLWGNHAQGFARHITGADHLVLRSAHPSPLSARRGFFGSRPFSRINDWLKARGDTPINWTVP 217
BLAST of mRNA_L-digitata_M_contig98604.1.1 vs. uniprot
Match: A0A2U8HFS6_9RHOB (Uracil-DNA glycosylase n=7 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A2U8HFS6_9RHOB) HSP 1 Score: 348 bits (894), Expect = 1.660e-118 Identity = 163/211 (77.25%), Postives = 181/211 (85.78%), Query Frame = 3
Query: 300 PKNWQHLPFFAQELPRIAAHLAQRDAQVLPPAPQIFAALEACPPQATRVVILGQDPYPTPGHAHGLAFSVEPDVRPLPRSLTNIYKEMQEDLGAIPPNGDLRFWAEQGVLLLNTALTVEAGKAGVHAKLGWSRLTEQVLAALSDQPRAFLLWGAHAQGFAKHITGPDHLILTSPHPSPLSARRGFFGSRPFSRINDWLKDGGQTPINWTTP 932
P++W HLPFF +E PRIAA LA+ ++LP P FAAL+AC P+ RVVILGQDPYPTPGHAHGLAFSVEP++RPLPRSLTNIYKE+QE+ GA+PPNGDLRFWA QGVLLLNTAL+V AG AG HAKLGWS LT QVL ALSDQPRAF+LWG HAQ FA +I G DHLILTS HPSPLSARRGFFGSRPFSR+NDWLK G+TPINWTTP
Sbjct: 4 PESWGHLPFFTKEFPRIAAALAEETREILPAEPLRFAALDACAPEEVRVVILGQDPYPTPGHAHGLAFSVEPEIRPLPRSLTNIYKELQEEFGAVPPNGDLRFWARQGVLLLNTALSVPAGNAGAHAKLGWSTLTAQVLEALSDQPRAFILWGGHAQKFAPYIRGEDHLILTSAHPSPLSARRGFFGSRPFSRVNDWLKARGETPINWTTP 214 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98604.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig98604.1.1 >prot_L-digitata_M_contig98604.1.1 ID=prot_L-digitata_M_contig98604.1.1|Name=mRNA_L-digitata_M_contig98604.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=127bp MQEDLGAIPPNGDLRFWAEQGVLLLNTALTVEAGKAGVHAKLGWSRLTEQback to top mRNA from alignment at L-digitata_M_contig98604:1..941- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig98604.1.1 ID=mRNA_L-digitata_M_contig98604.1.1|Name=mRNA_L-digitata_M_contig98604.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=941bp|location=Sequence derived from alignment at L-digitata_M_contig98604:1..941- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig98604:1..941- >mRNA_L-digitata_M_contig98604.1.1 ID=mRNA_L-digitata_M_contig98604.1.1|Name=mRNA_L-digitata_M_contig98604.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=381bp|location=Sequence derived from alignment at L-digitata_M_contig98604:1..941- (Laminaria digitata LdigPH10_18mv male)back to top |