mRNA_L-digitata_M_contig98582.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig98582.2.1
Unique NamemRNA_L-digitata_M_contig98582.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig98582.2.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 7.480e-28
Identity = 56/111 (50.45%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHVGLRARTLHETGNWLVRTDCSNAFNTVKRTAVLKEVANCVPAPKPLVAKCYGTRPADV----------TIACSSGVQQGDAMGPAIFCPELRPGLKRFR 303
            QFGVAV GGVE V + A+ +H+TG+W+V+TDCSNAFNT KRTA++ + A  VP     +A+CY   PA            TI C SGVQQGD MGP +FC  L P + + R
Sbjct:  113 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLR 223
[Close]
BLAST of mRNA_L-digitata_M_contig98582.2.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.870e-26
Identity = 56/111 (50.45%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHVGLRARTLHETGNWLVRTDCSNAFNTVKRTAVLKEVANCVPAPKPLVAKCYGTRPADV----------TIACSSGVQQGDAMGPAIFCPELRPGLKRFR 303
            QFGVAV GGVE V + A+ +H+TG+W+V+TDCSNAFNT KRTA++ + A  VP     +A+CY   PA            TI C SGVQQGD MGP +FC  L P + + R
Sbjct:  112 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLR 222
[Close]
BLAST of mRNA_L-digitata_M_contig98582.2.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 3.330e-26
Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHVGLRARTLHETGNWLVRTDCSNAFNTVKRTAVLKEVANCVPAPKPLVAKCYGTRPADV----------TIACSSGVQQGDAMGPAIFCPELRPGLKRFR 303
            QFGVAV GGVE V + A+ +H+TG+W+V+TDCSNAFNT KRTA++ + A  VP     +A+CY   PA            TI C  GVQQGD MGP +FC  L P + + R
Sbjct:  203 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLR 313
[Close]
BLAST of mRNA_L-digitata_M_contig98582.2.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.660e-26
Identity = 56/111 (50.45%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHVGLRARTLHETGNWLVRTDCSNAFNTVKRTAVLKEVANCVPAPKPLVAKCYGTRPADV----------TIACSSGVQQGDAMGPAIFCPELRPGLKRFR 303
            QFGVAV GGVE V + A+ +H+TG+W+V+TDCSNAFNT KRTA++ + A  VP     +A+CY   PA            TI C SGVQQGD MGP +FC  L P + + R
Sbjct:  488 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGEHRTIECKSGVQQGDGMGPPLFCFILVPIVLKLR 598
[Close]
BLAST of mRNA_L-digitata_M_contig98582.2.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.670e-26
Identity = 56/111 (50.45%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHVGLRARTLHETGNWLVRTDCSNAFNTVKRTAVLKEVANCVPAPKPLVAKCYGTRPADV----------TIACSSGVQQGDAMGPAIFCPELRPGLKRFR 303
            QFGVAV GGVE V + A+ +H+TG+W+V+TDCSNAFNT KRTA++ + A  VP     +A+CY   PA            TI C SGVQQGD MGP +FC  L P + + R
Sbjct:  502 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLR 612
[Close]
BLAST of mRNA_L-digitata_M_contig98582.2.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.730e-26
Identity = 56/111 (50.45%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHVGLRARTLHETGNWLVRTDCSNAFNTVKRTAVLKEVANCVPAPKPLVAKCYGTRPADV----------TIACSSGVQQGDAMGPAIFCPELRPGLKRFR 303
            QFGVAV GGVE V + A+ +H+TG+W+V+TDCSNAFNT KRTA++ + A  VP     +A+CY   PA            TI C SGVQQGD MGP +FC  L P + + R
Sbjct:  481 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLR 591
[Close]
BLAST of mRNA_L-digitata_M_contig98582.2.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 6.760e-26
Identity = 56/111 (50.45%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHVGLRARTLHETGNWLVRTDCSNAFNTVKRTAVLKEVANCVPAPKPLVAKCYGTRPADV----------TIACSSGVQQGDAMGPAIFCPELRPGLKRFR 303
            QFGVAV GGVE V + A+ +H+TG+W+V+TDCSNAFNT KRTA++ + A  VP     +A+CY   PA            TI C SGVQQGD MGP +FC  L P + + R
Sbjct:  431 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKNVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLR 541
[Close]
BLAST of mRNA_L-digitata_M_contig98582.2.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 9.240e-26
Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHVGLRARTLHETGNWLVRTDCSNAFNTVKRTAVLKEVANCVPAPKPLVAKCYGTRPADV----------TIACSSGVQQGDAMGPAIFCPELRPGLKRFR 303
            QFGVAV GGVE V + A+ +H+TG+W+V+TDCSNAFNT KRTA++ + +  VP     +A+CY   PA            TI C SGVQQGD MGP +FC  L P + + R
Sbjct:  480 QFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLR 590
[Close]
BLAST of mRNA_L-digitata_M_contig98582.2.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.700e-25
Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHVGLRARTLHETGNWLVRTDCSNAFNTVKRTAVLKEVANCVPAPKPLVAKCYGTRPADV----------TIACSSGVQQGDAMGPAIFCPELRPGLKRFR 303
            QFG AV GGVE V + A+ +H+TG+W+V+TDCSNAFNT KRTA++ + A  VP     +A+CY   PA            TI C SGVQQGD MGP +FC  L P + + R
Sbjct:   28 QFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLR 138
[Close]
BLAST of mRNA_L-digitata_M_contig98582.2.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.760e-25
Identity = 54/111 (48.65%), Postives = 70/111 (63.06%), Query Frame = 1 
Query:    1 QFGVAVPGGVEHVGLRARTLHETGNWLVRTDCSNAFNTVKRTAVLKEVANCVPAPKPLVAKCYGTRPADV----------TIACSSGVQQGDAMGPAIFCPELRPGLKRFR 303
            QFGVAV GGVE V + A+ +H+TG+W+V+TDCS+AFNT KRT ++ + A  VP     +A+CY   PA            TI C SGVQQGD MGP +FC  L P + + R
Sbjct:  105 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLR 215
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98582.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Y4_9PHAE7.480e-2850.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE1.870e-2650.45Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KR59_9PHAE3.330e-2649.55Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KA96_9PHAE3.660e-2650.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI32_9PHAE3.670e-2650.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE3.730e-2650.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KAK8_9PHAE6.760e-2650.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKQ2_9PHAE9.240e-2649.55Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE1.700e-2549.55Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K0V7_9PHAE2.760e-2548.65Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98582contigL-digitata_M_contig98582:566..903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15708731
Preferred nameCWC27
PFAMsPro_isomerase
Model size309
Max annot lvl2759|Eukaryota
KEGG koko:K01802,ko:K12737
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0030054,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0055044,GO:0070013,GO:0071012,GO:0071013,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1990904
Exons2
Evalue5.14e-11
EggNOG OGsCOG0652@1|root,KOG0885@2759|Eukaryota
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
Cds size309
COG categoryO
BRITEko00000,ko01000,ko03041,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408643.2354822-CDS-L-digitata_M_contig98582:565..7741682408643.2354822-CDS-L-digitata_M_contig98582:565..774Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig98582 566..774 +
1682408643.2507308-CDS-L-digitata_M_contig98582:803..9031682408643.2507308-CDS-L-digitata_M_contig98582:803..903Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig98582 804..903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98582.2.1prot_L-digitata_M_contig98582.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig98582 566..903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig98582.2.1

>prot_L-digitata_M_contig98582.2.1 ID=prot_L-digitata_M_contig98582.2.1|Name=mRNA_L-digitata_M_contig98582.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=103bp
QFGVAVPGGVEHVGLRARTLHETGNWLVRTDCSNAFNTVKRTAVLKEVAN
CVPAPKPLVAKCYGTRPADVTIACSSGVQQGDAMGPAIFCPELRPGLKRF
RQE
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mRNA from alignment at L-digitata_M_contig98582:566..903+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig98582.2.1 ID=mRNA_L-digitata_M_contig98582.2.1|Name=mRNA_L-digitata_M_contig98582.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=338bp|location=Sequence derived from alignment at L-digitata_M_contig98582:566..903+ (Laminaria digitata LdigPH10_18mv male)
CAGTTTGGGGTCGCTGTACCCGGCGGAGTGGAGCATGTGGGATTGAGGGC
TAGGACGCTACACGAGACGGGAAACTGGCTCGTTCGCACTGACTGCTCCA
ACGCCTTCAACACCGTCAAAAGGACGGCGGTGCTAAAAGAGGTGGCAAAC
TGCGTGCCAGCGCCCAAGCCGCTAGTGGCCAAGTGCTACGGCACAAGACC
AGCCGACGTGTTTTCCGGATGGACTCAGGGGAGACCAGGACGATCGCTTG
CTCCAGCGGTGTTCAGCAAGGGGACGCCATGGGACCGGCAATATTCTGCC
CGGAGTTGCGACCGGGGCTGAAGCGATTCCGACAGGAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig98582:566..903+

>mRNA_L-digitata_M_contig98582.2.1 ID=mRNA_L-digitata_M_contig98582.2.1|Name=mRNA_L-digitata_M_contig98582.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=309bp|location=Sequence derived from alignment at L-digitata_M_contig98582:566..903+ (Laminaria digitata LdigPH10_18mv male)
CAGTTTGGGGTCGCTGTACCCGGCGGAGTGGAGCATGTGGGATTGAGGGC
TAGGACGCTACACGAGACGGGAAACTGGCTCGTTCGCACTGACTGCTCCA
ACGCCTTCAACACCGTCAAAAGGACGGCGGTGCTAAAAGAGGTGGCAAAC
TGCGTGCCAGCGCCCAAGCCGCTAGTGGCCAAGTGCTACGGCACAAGACC
AGCCGACGTGACGATCGCTTGCTCCAGCGGTGTTCAGCAAGGGGACGCCA
TGGGACCGGCAATATTCTGCCCGGAGTTGCGACCGGGGCTGAAGCGATTC
CGACAGGAA
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