mRNA_L-digitata_M_contig98553.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig98553.1.1 vs. uniprot
Match: UPI000731F5C6 (iron ABC transporter permease n=1 Tax=Thiohalocapsa sp. ML1 TaxID=1431688 RepID=UPI000731F5C6) HSP 1 Score: 328 bits (841), Expect = 7.210e-107 Identity = 157/225 (69.78%), Postives = 189/225 (84.00%), Query Frame = 1
Query: 1 PMTPRLHRKAPIVYISIGIAALIIVPIIGVIWNVFQPGQGNWPHLASTVLPDYILNSLTLMVGVGLGVGLVGTALAWLVVMYRFPGRRFFEWALILPLAVPAFVVAYAYTDFLQGSGPVQTLLRDLTGWSFQDYYFPNIRSMGGAIVIFTSVLIPYVYLLARNAFLEQSICALEVSRTLGRTPLRSFLDVALPMARPAIVTGIALSLMETLADFGTVAHFGIPTF 675
P R + P+ +S+ +AAL VP++GV++N+F+ GQGNW HL STVLPDY+LNSL LM+G G+GV + GT AWLVVM RFPGRR FEW L+LPLA+PA+VVAYAYTD LQ +GPVQTLLRDLTGW +DY+FPNIRS+GGA+V+F++VL PYVYLLAR AFL+QSICALEV RTLGRTP F +ALP+ARPAIVTG+AL+LMETLADFGTVAHFG+PTF
Sbjct: 9 PARDRRRPRLPLAALSVVVAALFSVPVLGVLFNMFREGQGNWAHLVSTVLPDYVLNSLVLMLGAGVGVVIGGTGTAWLVVMCRFPGRRLFEWMLVLPLAIPAYVVAYAYTDLLQHAGPVQTLLRDLTGWGPRDYWFPNIRSVGGAVVVFSAVLYPYVYLLARTAFLQQSICALEVGRTLGRTPWGGFWSIALPLARPAIVTGMALALMETLADFGTVAHFGVPTF 233
BLAST of mRNA_L-digitata_M_contig98553.1.1 vs. uniprot
Match: UPI0019035863 (iron ABC transporter permease n=1 Tax=Thiohalocapsa halophila TaxID=69359 RepID=UPI0019035863) HSP 1 Score: 327 bits (838), Expect = 1.980e-106 Identity = 157/219 (71.69%), Postives = 187/219 (85.39%), Query Frame = 1
Query: 19 HRKAPIVYISIGIAALIIVPIIGVIWNVFQPGQGNWPHLASTVLPDYILNSLTLMVGVGLGVGLVGTALAWLVVMYRFPGRRFFEWALILPLAVPAFVVAYAYTDFLQGSGPVQTLLRDLTGWSFQDYYFPNIRSMGGAIVIFTSVLIPYVYLLARNAFLEQSICALEVSRTLGRTPLRSFLDVALPMARPAIVTGIALSLMETLADFGTVAHFGIPTF 675
R+ + YIS+ +AAL VP++GV+ NVF+ GQGNWPHL STVLPDY++NSL LM+GVG GV + GT AWLVVM RFPGRR FEW L+LPLA+PA+VVAYAYTD LQ +GPVQTLLRDLTG +DY+FPNIRS GGAI++F++VL PYVYLLAR AFL+QS+CALEV RTLGRTP +F +ALP+ARPAIVTG+AL+LMETLADFGTVAHFG+PTF
Sbjct: 19 RRRFSMAYISVAVAALFSVPLLGVVLNVFREGQGNWPHLVSTVLPDYVMNSLALMLGVGAGVVIGGTGTAWLVVMCRFPGRRLFEWMLVLPLAIPAYVVAYAYTDLLQHAGPVQTLLRDLTGLGPRDYWFPNIRSTGGAILVFSAVLYPYVYLLARTAFLQQSVCALEVGRTLGRTPWGAFTSIALPLARPAIVTGMALALMETLADFGTVAHFGVPTF 237
BLAST of mRNA_L-digitata_M_contig98553.1.1 vs. uniprot
Match: UPI000E5C728E (iron ABC transporter permease n=1 Tax=Algihabitans albus TaxID=2164067 RepID=UPI000E5C728E) HSP 1 Score: 292 bits (747), Expect = 7.410e-93 Identity = 148/222 (66.67%), Postives = 175/222 (78.83%), Query Frame = 1
Query: 10 PRLHRKAPIVYISIGIAALIIVPIIGVIWNVFQPGQGNWPHLASTVLPDYILNSLTLMVGVGLGVGLVGTALAWLVVMYRFPGRRFFEWALILPLAVPAFVVAYAYTDFLQGSGPVQTLLRDLTGWSFQDYYFPNIRSMGGAIVIFTSVLIPYVYLLARNAFLEQSICALEVSRTLGRTPLRSFLDVALPMARPAIVTGIALSLMETLADFGTVAHFGIPTF 675
PRL + ++ +A L+ +P++GV ++FQ G W HLA TVLPD+I+N+L L V VG GV LVG A AWLV M RFPGRR FEWALILPLA PA+V+AYAYTDFLQ GPVQTLLR+LTGW +DY+FP IRS+ GA ++FT VL PYVYLLAR AFL QS+CALEVSRTLGR+ SF VA+P+ARPAIVTG AL+LMETLADFGTVAHFG+PTF
Sbjct: 29 PRLKSGTWLTATAVAVAGLLALPVLGVFASLFQRSDGAWQHLAETVLPDFIVNTLYLTVLVGGGVLLVGVATAWLVTMCRFPGRRLFEWALILPLAFPAYVIAYAYTDFLQHPGPVQTLLRELTGWGPRDYWFPQIRSIEGAGLMFTLVLYPYVYLLARTAFLNQSVCALEVSRTLGRSAWSSFRHVAMPLARPAIVTGTALALMETLADFGTVAHFGVPTF 250
BLAST of mRNA_L-digitata_M_contig98553.1.1 vs. uniprot
Match: UPI001F0E7BBD (iron ABC transporter permease n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI001F0E7BBD) HSP 1 Score: 290 bits (742), Expect = 1.750e-92 Identity = 136/212 (64.15%), Postives = 174/212 (82.08%), Query Frame = 1
Query: 40 YISIGIAALIIVPIIGVIWNVFQPGQGNWPHLASTVLPDYILNSLTLMVGVGLGVGLVGTALAWLVVMYRFPGRRFFEWALILPLAVPAFVVAYAYTDFLQGSGPVQTLLRDLTGWSFQDYYFPNIRSMGGAIVIFTSVLIPYVYLLARNAFLEQSICALEVSRTLGRTPLRSFLDVALPMARPAIVTGIALSLMETLADFGTVAHFGIPTF 675
++S+ +A L ++PIIGV+ ++ QP W HLASTVLP Y++N+ L++GVGLGV ++GT AWLV M RFPGRRFFEWALILPLAVPA+V+AYAYTDFLQ +G VQTLLRD+TG S+++Y+FP +RS+GGA+ + VL PY Y+L+R AFL+QS+CAL+VSRTLG P RSF +ALP+ARPAIV G AL+LMETLADFGTV+ FG+P F
Sbjct: 3 WLSVAVAGLFLIPIIGVLMSLAQPSSATWTHLASTVLPRYLVNTAVLVLGVGLGVPIIGTGTAWLVTMCRFPGRRFFEWALILPLAVPAYVIAYAYTDFLQPAGSVQTLLRDMTGLSYREYWFPEVRSLGGAVAMLVLVLYPYAYMLSRTAFLDQSVCALDVSRTLGCGPWRSFFRIALPLARPAIVAGTALALMETLADFGTVSFFGVPNF 214
BLAST of mRNA_L-digitata_M_contig98553.1.1 vs. uniprot
Match: UPI001D043CF1 (iron ABC transporter permease n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001D043CF1) HSP 1 Score: 288 bits (736), Expect = 2.010e-91 Identity = 137/216 (63.43%), Postives = 175/216 (81.02%), Query Frame = 1
Query: 28 APIVYISIGIAALIIVPIIGVIWNVFQPGQGNWPHLASTVLPDYILNSLTLMVGVGLGVGLVGTALAWLVVMYRFPGRRFFEWALILPLAVPAFVVAYAYTDFLQGSGPVQTLLRDLTGWSFQDYYFPNIRSMGGAIVIFTSVLIPYVYLLARNAFLEQSICALEVSRTLGRTPLRSFLDVALPMARPAIVTGIALSLMETLADFGTVAHFGIPTF 675
AP+ ++SI +A L +VP++ V++++ Q G G W HLASTVLP Y+ N+ L+ GVG+GV L+G AWLV M RFPGRR FEWALILPLAVPA+V+AYAYTDFLQ +GPVQTLLRDLTG S+++Y+FP +RS+GGA+ + T VL PY Y+L+R AFL+QS+CAL+VSRTLG P +F VALP+ARPAI+ G AL+LMETLADFGTV+ FG+P F
Sbjct: 6 APLTWLSIAVAGLFLVPVVSVLFSLTQSGDGTWSHLASTVLPRYLFNTAVLVGGVGIGVPLLGAGTAWLVTMCRFPGRRVFEWALILPLAVPAYVMAYAYTDFLQPAGPVQTLLRDLTGLSYREYWFPEVRSLGGAVAMLTLVLYPYAYMLSRAAFLDQSVCALDVSRTLGCGPWATFFRVALPLARPAIIAGTALALMETLADFGTVSFFGVPNF 221
BLAST of mRNA_L-digitata_M_contig98553.1.1 vs. uniprot
Match: UPI001FB27112 (iron ABC transporter permease n=1 Tax=Orrella sp. f23 TaxID=2782176 RepID=UPI001FB27112) HSP 1 Score: 286 bits (733), Expect = 5.100e-91 Identity = 139/219 (63.47%), Postives = 171/219 (78.08%), Query Frame = 1
Query: 19 HRKAPIVYISIGIAALIIVPIIGVIWNVFQPGQGNWPHLASTVLPDYILNSLTLMVGVGLGVGLVGTALAWLVVMYRFPGRRFFEWALILPLAVPAFVVAYAYTDFLQGSGPVQTLLRDLTGWSFQDYYFPNIRSMGGAIVIFTSVLIPYVYLLARNAFLEQSICALEVSRTLGRTPLRSFLDVALPMARPAIVTGIALSLMETLADFGTVAHFGIPTF 675
+R + +++I I + +P+I ++ +VFQ GQGNWPHL TVLP Y++NSL L VGLGVGL+G AWLVVM +FPGRR FEWALILPLA+PA+VVAYAYTD LQ SGPVQ R++TG F +Y+FP IRS+GGAI +F VL PYVYLLAR AFLEQS+ LE SR LG+TPL +F +ALP+ARPAIV G++L+LMETLADFGTV HFG+ TF
Sbjct: 5 YRPSAAAWLAILIGLTLSLPLISIVLSVFQQGQGNWPHLVETVLPRYVVNSLYLTAAVGLGVGLIGVGCAWLVVMCQFPGRRLFEWALILPLAMPAYVVAYAYTDVLQSSGPVQVWWREMTGLRFGEYWFPQIRSLGGAITVFIFVLYPYVYLLARTAFLEQSVATLEASRMLGKTPLGAFQKIALPLARPAIVVGVSLALMETLADFGTVFHFGVQTF 223
BLAST of mRNA_L-digitata_M_contig98553.1.1 vs. uniprot
Match: UPI00037A8C55 (iron ABC transporter permease n=1 Tax=Amorphus coralli TaxID=340680 RepID=UPI00037A8C55) HSP 1 Score: 276 bits (706), Expect = 7.830e-87 Identity = 136/220 (61.82%), Postives = 170/220 (77.27%), Query Frame = 1
Query: 19 HRKAP-IVYISIGIAALIIVPIIGVIWNVFQPGQGNWPHLASTVLPDYILNSLTLMVGVGLGVGLVGTALAWLVVMYRFPGRRFFEWALILPLAVPAFVVAYAYTDFLQGSGPVQTLLRDLTGWSFQDYYFPNIRSMGGAIVIFTSVLIPYVYLLARNAFLEQSICALEVSRTLGRTPLRSFLDVALPMARPAIVTGIALSLMETLADFGTVAHFGIPTF 675
RKA + ++++ ++ +++ PII V+ F G G W HLA+TVLP Y++N++ L+V V +GV ++GT AWLV M RFPG+R EWALILP A PA+V+AYAYTDFLQ GPVQT LR LTGW +DY+FP IRS+ GA V+FT VL PYVYLLAR AFL+QS C LEV+RTLGRTP +F VALPMARPAI G++L+LMETLADFGTVAHFG+ TF
Sbjct: 22 RRKAGWLAWVALSVSLVLLSPIIAVVAAAFGAGSGTWAHLAATVLPLYVINTVVLVVAVTVGVFVIGTGTAWLVTMCRFPGKRVLEWALILPFAAPAYVIAYAYTDFLQHPGPVQTWLRALTGWGPRDYWFPEIRSLEGAAVVFTLVLYPYVYLLARAAFLQQSACTLEVARTLGRTPWTAFFRVALPMARPAIAVGVSLALMETLADFGTVAHFGVQTF 241
BLAST of mRNA_L-digitata_M_contig98553.1.1 vs. uniprot
Match: A0A843RKD3_9PROT (ABC transporter permease subunit n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A843RKD3_9PROT) HSP 1 Score: 273 bits (697), Expect = 8.300e-86 Identity = 130/201 (64.68%), Postives = 162/201 (80.60%), Query Frame = 1
Query: 73 VPIIGVIWNVFQPGQGNWPHLASTVLPDYILNSLTLMVGVGLGVGLVGTALAWLVVMYRFPGRRFFEWALILPLAVPAFVVAYAYTDFLQGSGPVQTLLRDLTGWSFQDYYFPNIRSMGGAIVIFTSVLIPYVYLLARNAFLEQSICALEVSRTLGRTPLRSFLDVALPMARPAIVTGIALSLMETLADFGTVAHFGIPTF 675
+P+ V++++ Q G G W HLASTVLP Y+ N+ L+ GVG+GV ++G AWLV M RFPGRR FEWALILPLAVPA+V+AYAYTDFLQ +GPVQTLLRDLTG +++DY+FP IRS+GGA+ + VL PY Y+L+R AFL+QS+CAL+VSRTLG P SF VALP+ARPAI+ G AL+LMETLADFGTV+ FG+P F
Sbjct: 1 MPVFSVLFSLTQSGGGTWSHLASTVLPGYLFNTAVLVAGVGIGVPVIGAGCAWLVTMCRFPGRRVFEWALILPLAVPAYVMAYAYTDFLQPAGPVQTLLRDLTGLAYRDYWFPEIRSLGGAVAMLVLVLYPYAYMLSRAAFLDQSVCALDVSRTLGCGPWSSFFRVALPLARPAIIAGTALALMETLADFGTVSFFGVPNF 201
BLAST of mRNA_L-digitata_M_contig98553.1.1 vs. uniprot
Match: A0A7V7KG44_9GAMM (Iron ABC transporter permease n=3 Tax=Halomonas TaxID=2745 RepID=A0A7V7KG44_9GAMM) HSP 1 Score: 275 bits (702), Expect = 8.470e-86 Identity = 138/225 (61.33%), Postives = 170/225 (75.56%), Query Frame = 1
Query: 4 MTPRL-HRKAPIVYISIGIAALIIVPIIGVIWNVFQPGQGNWPHLASTVLPDYILNSLTLMVGVGLGVGLVGTALAWLVVMYRFPGRRFFEWALILPLAVPAFVVAYAYTDFLQGSGPVQTLLRDLTGWSFQDYYFPNIRSMGGAIVIFTSVLIPYVYLLARNAFLEQSICALEVSRTLGRTPLRSFLDVALPMARPAIVTGIALSLMETLADFGTVAHFGIPTF 675
+T RL HR +P + + IA + +P+I ++ +VF P QG W HLASTVL Y+ N+ L V VGLG ++GT AWLVVM RFPGRR FEWAL+LPLAVP +V+AYAYTDFLQ +GP+Q+ LR+L GWS DYYFPNIRS+GGA + T VL PYVYLLAR AFLEQS+C L+V RTLGR P R F+ VA+P+ARPAIV G++L LMETL +FG V FG+ TF
Sbjct: 56 VTRRLSHRLSPWSLLVLAIALFVALPVIAILAHVFMPTQGIWQHLASTVLSRYLSNTFLLAVTVGLGTMVIGTGTAWLVVMCRFPGRRLFEWALLLPLAVPTYVIAYAYTDFLQFAGPLQSWLRELFGWSHGDYYFPNIRSLGGAATLMTLVLYPYVYLLARAAFLEQSVCVLDVGRTLGRGPWRLFVSVAVPLARPAIVGGVSLVLMETLNEFGAVQFFGVDTF 280
BLAST of mRNA_L-digitata_M_contig98553.1.1 vs. uniprot
Match: A0A3M0XTI3_9PROT (Iron ABC transporter permease (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M0XTI3_9PROT) HSP 1 Score: 270 bits (691), Expect = 9.050e-86 Identity = 141/223 (63.23%), Postives = 170/223 (76.23%), Query Frame = 1
Query: 22 RKAPIVYISIGIAALII-----VPIIGVIWNVFQPGQGNWPHLASTVLPDYILNSLTLMVGVGLGVGLVGTALAWLVVMYRFPGRRFFEWALILPLAVPAFVVAYAYTDFLQGSGPVQTLLRDLTGWSFQDYYFPNIRSMGGAIVIFTSVLIPYVYLLARNAFLEQSICALEVSRTLGRTPLRSFLDVALPMARPAIVTGIALSLMETLADFGTVAHFGIPTF 675
R+ PI ++G AALII +P+I V+ NVF P QG W HLA TVLP Y+ N++ L VGVG GV +G + AWLV M RFPGR FEWALILPLAVPA+V+AY YTD LQ +GPVQ+LLR++TGW ++Y+FP IRS+GGAI + VL PYVYLL+R AFLEQS+CALEVSRTLG P SF VALP+ARP+IV G AL+LMET+ADFGTVA F + TF
Sbjct: 28 RRRPIG--ALGWAALIIALLFSIPVISVLANVFVPSQGTWQHLAETVLPRYVANTVWLAVGVGAGVLTIGISTAWLVTMCRFPGRWIFEWALILPLAVPAYVMAYTYTDLLQFTGPVQSLLREITGWGPREYWFPPIRSLGGAIAMLAFVLYPYVYLLSRAAFLEQSVCALEVSRTLGCGPWASFFRVALPLARPSIVAGTALALMETIADFGTVAFFNVQTF 248 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98553.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig98553.1.1 >prot_L-digitata_M_contig98553.1.1 ID=prot_L-digitata_M_contig98553.1.1|Name=mRNA_L-digitata_M_contig98553.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=224bp MTPRLHRKAPIVYISIGIAALIIVPIIGVIWNVFQPGQGNWPHLASTVLPback to top mRNA from alignment at L-digitata_M_contig98553:294..968+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig98553.1.1 ID=mRNA_L-digitata_M_contig98553.1.1|Name=mRNA_L-digitata_M_contig98553.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=675bp|location=Sequence derived from alignment at L-digitata_M_contig98553:294..968+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig98553:294..968+ >mRNA_L-digitata_M_contig98553.1.1 ID=mRNA_L-digitata_M_contig98553.1.1|Name=mRNA_L-digitata_M_contig98553.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=672bp|location=Sequence derived from alignment at L-digitata_M_contig98553:294..968+ (Laminaria digitata LdigPH10_18mv male)back to top |