mRNA_L-digitata_M_contig98470.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig98470.2.1
Unique NamemRNA_L-digitata_M_contig98470.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig98470.2.1 vs. uniprot
Match: A0A2D7FLL1_9PROT (Lon protease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FLL1_9PROT)

HSP 1 Score: 376 bits (965), Expect = 4.700e-123
Identity = 199/220 (90.45%), Postives = 212/220 (96.36%), Query Frame = 1 
Query:    1 MSDTAKTAIFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQILLVAQKNAGQDDPAVEDIYEMGTIGTVLQLLKLPDGTVKVLVEGSQRAKIMRYTENDDFFQAEAELLDDVVDDGKDLEALSRSVVTQFEQYIKLNKKIPPEVLVSLNQIEDPGKLSDTIASHLALKISEKQELLEFVSAADRLERACSFMESEIGVLQVEKRIRNRVKRQM 660
            MS TAK+AIFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVM+DDKQILLVAQ+NAGQDDPAVEDIYEMGTIGTVLQLLKLPDGTVKVLVEGSQRAKI+RYTEND+FFQAEAELL+ VV++ KD+EALSRSVVTQFEQYIKLNKKIP EVLVSLNQIEDP KLSDTIASHLA+KI+EKQELLE V+A DRLERA SFMESEIGVLQVEK+IRNRVKRQM
Sbjct:    1 MSGTAKSAIFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMEDDKQILLVAQRNAGQDDPAVEDIYEMGTIGTVLQLLKLPDGTVKVLVEGSQRAKILRYTENDNFFQAEAELLESVVEEDKDVEALSRSVVTQFEQYIKLNKKIPAEVLVSLNQIEDPAKLSDTIASHLAVKIAEKQELLELVAAGDRLERAYSFMESEIGVLQVEKKIRNRVKRQM 220
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BLAST of mRNA_L-digitata_M_contig98470.2.1 vs. uniprot
Match: A0A2S6QCF5_9PROT (Lon protease n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6QCF5_9PROT)

HSP 1 Score: 352 bits (904), Expect = 5.740e-114
Identity = 186/220 (84.55%), Postives = 204/220 (92.73%), Query Frame = 1 
Query:    1 MSDTAKTAIFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQILLVAQKNAGQDDPAVEDIYEMGTIGTVLQLLKLPDGTVKVLVEGSQRAKIMRYTENDDFFQAEAELLDDVVDDGKDLEALSRSVVTQFEQYIKLNKKIPPEVLVSLNQIEDPGKLSDTIASHLALKISEKQELLEFVSAADRLERACSFMESEIGVLQVEKRIRNRVKRQM 660
            MSDTAK  IFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQILLVAQK+AGQDDPA+++IY++GTIGTVLQLLKLPDGTVKVLVEGSQRAK++RYT+  +FFQAEAEL+ +  D  KD+EAL RSV++QFEQYIKLNKKIPPEVLVSLNQ+ED  KLSDTIASHLALKISEKQELLE VS A+RLERA S MESEIGVLQVEKRIR+RVKRQM
Sbjct:    1 MSDTAKKTIFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQILLVAQKDAGQDDPAIDEIYDVGTIGTVLQLLKLPDGTVKVLVEGSQRAKVVRYTDKAEFFQAEAELIVETADKDKDIEALCRSVISQFEQYIKLNKKIPPEVLVSLNQMEDESKLSDTIASHLALKISEKQELLELVSPAERLERAYSSMESEIGVLQVEKRIRSRVKRQM 220
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BLAST of mRNA_L-digitata_M_contig98470.2.1 vs. uniprot
Match: A0A2D8G4E6_9PROT (Lon protease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G4E6_9PROT)

HSP 1 Score: 347 bits (889), Expect = 9.790e-112
Identity = 184/220 (83.64%), Postives = 199/220 (90.45%), Query Frame = 1 
Query:    1 MSDTAKTAIFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQILLVAQKNAGQDDPAVEDIYEMGTIGTVLQLLKLPDGTVKVLVEGSQRAKIMRYTENDDFFQAEAELLDDVVDDGKDLEALSRSVVTQFEQYIKLNKKIPPEVLVSLNQIEDPGKLSDTIASHLALKISEKQELLEFVSAADRLERACSFMESEIGVLQVEKRIRNRVKRQM 660
            MSDTAK + FPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQILLVAQKNAGQDDPA EDIY +GTIGTVLQL KLPDGTVKVLVEGS+RAKI+RYT  +DFFQAEAE +++V   G D+EALSRSV++QFE YIKLNKKIPPEVLVSLNQIED  KLSDTIASHLA KI+EKQELLE  S A RLE+A +FMESEIGVLQVEKRIR+RVKRQM
Sbjct:    1 MSDTAKVSTFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQILLVAQKNAGQDDPAAEDIYXVGTIGTVLQLXKLPDGTVKVLVEGSKRAKILRYTSKEDFFQAEAEEVEEVXXXGTDIEALSRSVISQFENYIKLNKKIPPEVLVSLNQIEDVSKLSDTIASHLAXKIAEKQELLELTSPAQRLEKANTFMESEIGVLQVEKRIRSRVKRQM 220
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BLAST of mRNA_L-digitata_M_contig98470.2.1 vs. uniprot
Match: A0A6N7FF28_9PROT (Endopeptidase La (Fragment) n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FF28_9PROT)

HSP 1 Score: 323 bits (829), Expect = 5.030e-110
Identity = 167/220 (75.91%), Postives = 193/220 (87.73%), Query Frame = 1 
Query:    1 MSDTAKTAIFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQILLVAQKNAGQDDPAVEDIYEMGTIGTVLQLLKLPDGTVKVLVEGSQRAKIMRYTENDDFFQAEAELLDDVVDDGKDLEALSRSVVTQFEQYIKLNKKIPPEVLVSLNQIEDPGKLSDTIASHLALKISEKQELLEFVSAADRLERACSFMESEIGVLQVEKRIRNRVKRQM 660
            MS+ ++  ++PVLPLRDIVVFPHMIVPLFVGR+KSV+ALEDVM+DDKQILLVAQKNA  D+P   DI+ +GT+GTVLQLLKLPDGTVKVLVEGS RA+I+ +TEND FF+A A  ++D  +D K+ EAL+RSV+ QFEQYIKLNKKIPPEVLVSLNQIEDP KL+DT+ASHLALKISEKQELLE  +  +RLERA  FMESEIGVLQVEKRIRNRVKRQM
Sbjct:    1 MSEQSQGVVYPVLPLRDIVVFPHMIVPLFVGREKSVRALEDVMKDDKQILLVAQKNASDDEPTAADIHSVGTVGTVLQLLKLPDGTVKVLVEGSHRARILDFTENDRFFEATARNMEDAGEDPKEFEALARSVIAQFEQYIKLNKKIPPEVLVSLNQIEDPSKLADTVASHLALKISEKQELLELPTVGERLERAYGFMESEIGVLQVEKRIRNRVKRQM 220
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BLAST of mRNA_L-digitata_M_contig98470.2.1 vs. uniprot
Match: A0A1N7IL06_9PROT (Lon protease n=2 Tax=Insolitispirillum peregrinum TaxID=80876 RepID=A0A1N7IL06_9PROT)

HSP 1 Score: 330 bits (846), Expect = 2.290e-105
Identity = 170/217 (78.34%), Postives = 194/217 (89.40%), Query Frame = 1 
Query:   10 TAKTAIFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQILLVAQKNAGQDDPAVEDIYEMGTIGTVLQLLKLPDGTVKVLVEGSQRAKIMRYTENDDFFQAEAELLDDVVDDGKDLEALSRSVVTQFEQYIKLNKKIPPEVLVSLNQIEDPGKLSDTIASHLALKISEKQELLEFVSAADRLERACSFMESEIGVLQVEKRIRNRVKRQM 660
            T +T  FPVLPLRDIVVFPHMIVPLFVGRDKSV+ALEDVM DDKQILLVAQKNA QDDP  +DIY +GT+ TVLQLLKLPDGTVKVLVEG +RAKI RYT+ ++FF+AEAELLDD  DD ++LEAL+RSV++QFEQY+KLNKKIPPEVLVS+NQIEDP KL+DTIASHL+LKI+EKQELLE  + ++RLER    MESEIGVLQVEK+IRNRVKRQM
Sbjct:    2 TGRTQTFPVLPLRDIVVFPHMIVPLFVGRDKSVRALEDVMADDKQILLVAQKNAAQDDPGPDDIYAVGTVSTVLQLLKLPDGTVKVLVEGGERAKIARYTDREEFFEAEAELLDDQSDDSQELEALARSVISQFEQYLKLNKKIPPEVLVSINQIEDPAKLADTIASHLSLKIAEKQELLESATISERLERVYGHMESEIGVLQVEKKIRNRVKRQM 218
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BLAST of mRNA_L-digitata_M_contig98470.2.1 vs. uniprot
Match: A0A352GNQ5_9PROT (Endopeptidase La (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A352GNQ5_9PROT)

HSP 1 Score: 319 bits (817), Expect = 4.210e-105
Identity = 168/215 (78.14%), Postives = 187/215 (86.98%), Query Frame = 1 
Query:   16 KTAIFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQILLVAQKNAGQDDPAVEDIYEMGTIGTVLQLLKLPDGTVKVLVEGSQRAKIMRYTENDDFFQAEAELLDDVVDDGKDLEALSRSVVTQFEQYIKLNKKIPPEVLVSLNQIEDPGKLSDTIASHLALKISEKQELLEFVSAADRLERACSFMESEIGVLQVEKRIRNRVKRQM 660
            K+  FPVLPLRDIVVFPHMIVPLFVGRDKSV+ALEDVMQDDKQILLVAQKNA QDDP  +DIY +GT+ TVLQLLKLPDGTVKVLVEG QRAK+  + +N  FF+ EAEL+ D   D  +LEALSRSV+ QFEQYIKLNKKIPPEVLVS+NQI++  KL+DT+ASHLALKISEKQELLE  SAA+RLER  S MESEIGVLQVEK+IRNRVKRQM
Sbjct:    2 KSQQFPVLPLRDIVVFPHMIVPLFVGRDKSVRALEDVMQDDKQILLVAQKNAAQDDPTADDIYTVGTVSTVLQLLKLPDGTVKVLVEGVQRAKVTEFVDNPSFFEVEAELIPDEEGDENELEALSRSVIGQFEQYIKLNKKIPPEVLVSINQIDEANKLADTVASHLALKISEKQELLEIESAAERLERVYSHMESEIGVLQVEKKIRNRVKRQM 216
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BLAST of mRNA_L-digitata_M_contig98470.2.1 vs. uniprot
Match: A4U0B9_9PROT (Lon protease n=4 Tax=Magnetospirillum TaxID=13134 RepID=A4U0B9_9PROT)

HSP 1 Score: 328 bits (841), Expect = 1.290e-104
Identity = 170/220 (77.27%), Postives = 197/220 (89.55%), Query Frame = 1 
Query:    1 MSDTAKTAIFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQILLVAQKNAGQDDPAVEDIYEMGTIGTVLQLLKLPDGTVKVLVEGSQRAKIMRYTENDDFFQAEAELLDDVVDDGKDLEALSRSVVTQFEQYIKLNKKIPPEVLVSLNQIEDPGKLSDTIASHLALKISEKQELLEFVSAADRLERACSFMESEIGVLQVEKRIRNRVKRQM 660
            MS+ A+  +FPVLPLRDIVVFPHMIVPLFVGRDKSV+ALEDVM++DKQILLVAQKNA QDDP   DIY++GT+ TVLQLLKLPDGTVKVLVEG +RA+I  +T+N+ FFQA AE++DD V +G++LEALSRSVV QFEQYIKLNKKIPPEVLVS+NQIEDP KL+DT+ASHL+LKISEKQELLE  + A+RLER  S+ME EIGVLQVEK+IRNRVKRQM
Sbjct:    1 MSEIARGDVFPVLPLRDIVVFPHMIVPLFVGRDKSVRALEDVMREDKQILLVAQKNAAQDDPTTADIYDVGTVSTVLQLLKLPDGTVKVLVEGGRRARITGFTDNESFFQATAEMIDDGVLEGQELEALSRSVVGQFEQYIKLNKKIPPEVLVSVNQIEDPAKLADTVASHLSLKISEKQELLELGTTAERLERVYSYMEGEIGVLQVEKKIRNRVKRQM 220
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BLAST of mRNA_L-digitata_M_contig98470.2.1 vs. uniprot
Match: A0A522WCS4_9PROT (Endopeptidase La (Fragment) n=1 Tax=Magnetospirillum sp. TaxID=31872 RepID=A0A522WCS4_9PROT)

HSP 1 Score: 315 bits (806), Expect = 1.910e-104
Identity = 165/220 (75.00%), Postives = 192/220 (87.27%), Query Frame = 1 
Query:    1 MSDTAKTAIFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQILLVAQKNAGQDDPAVEDIYEMGTIGTVLQLLKLPDGTVKVLVEGSQRAKIMRYTENDDFFQAEAELLDDVVDDGKDLEALSRSVVTQFEQYIKLNKKIPPEVLVSLNQIEDPGKLSDTIASHLALKISEKQELLEFVSAADRLERACSFMESEIGVLQVEKRIRNRVKRQM 660
            M +  +  IFPVLPLRDIVVFPHMIVPLFVGRDKSV+ALEDVM++DKQILLVAQKNA QDDP  +DIY +GT+ TVLQLLKLPDGTVKVLVEG +RA+I  +T+ND FFQA A+++D+   D ++LEALSRSVV+QFEQYIKLNKKIPPEVLVS+NQIED  KL+DT+ASHLALKI+EKQELLE    ++RLER  S+ME EIGVLQVEK+IRNRVKRQM
Sbjct:    1 MVENPRGDIFPVLPLRDIVVFPHMIVPLFVGRDKSVRALEDVMREDKQILLVAQKNAAQDDPTTDDIYTVGTVSTVLQLLKLPDGTVKVLVEGGKRARIRGFTDNDSFFQAYADVVDEREGDLQELEALSRSVVSQFEQYIKLNKKIPPEVLVSINQIEDAAKLADTVASHLALKIAEKQELLEVEVISERLERVYSYMEGEIGVLQVEKKIRNRVKRQM 220
[Close]
BLAST of mRNA_L-digitata_M_contig98470.2.1 vs. uniprot
Match: A0A2S6TLJ4_9PROT (Lon protease (Fragment) n=1 Tax=Alphaproteobacteria bacterium MarineAlpha3_Bin3 TaxID=2013069 RepID=A0A2S6TLJ4_9PROT)

HSP 1 Score: 319 bits (818), Expect = 4.470e-104
Identity = 168/217 (77.42%), Postives = 192/217 (88.48%), Query Frame = 1 
Query:   10 TAKTAIFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQILLVAQKNAGQDDPAVEDIYEMGTIGTVLQLLKLPDGTVKVLVEGSQRAKIMRYTENDDFFQAEAELLDDVVDDGKDLEALSRSVVTQFEQYIKLNKKIPPEVLVSLNQIEDPGKLSDTIASHLALKISEKQELLEFVSAADRLERACSFMESEIGVLQVEKRIRNRVKRQM 660
            T +  ++PVLPLRDIVVFPHMIVPLFVGRDKSV+ALEDVM+DDK+ILLVAQKNA QDDP+  DIY++GT+ TVLQLLKLPDGTVKVLVEG QRAKI  Y +N+DFF AE EL+++     ++LEAL+RSVV+QFEQYIKLNKKIPPEVLVSLNQIEDPGKL+DT+ASHLALK+SEKQELLE    ADRLER  S ME+EIGVLQVEK+IRNRVKRQM
Sbjct:    2 TYQVDMYPVLPLRDIVVFPHMIVPLFVGRDKSVRALEDVMKDDKKILLVAQKNAAQDDPSANDIYKVGTVSTVLQLLKLPDGTVKVLVEGVQRAKITSYADNEDFFLAEGELINEDESLTEELEALNRSVVSQFEQYIKLNKKIPPEVLVSLNQIEDPGKLADTVASHLALKVSEKQELLETELVADRLERVYSHMEAEIGVLQVEKKIRNRVKRQM 218
[Close]
BLAST of mRNA_L-digitata_M_contig98470.2.1 vs. uniprot
Match: A0A7C7PHA7_9PROT (Endopeptidase La (Fragment) n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7PHA7_9PROT)

HSP 1 Score: 313 bits (803), Expect = 6.200e-104
Identity = 164/220 (74.55%), Postives = 190/220 (86.36%), Query Frame = 1 
Query:    1 MSDTAKTAIFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQILLVAQKNAGQDDPAVEDIYEMGTIGTVLQLLKLPDGTVKVLVEGSQRAKIMRYTENDDFFQAEAELLDDVVDDGKDLEALSRSVVTQFEQYIKLNKKIPPEVLVSLNQIEDPGKLSDTIASHLALKISEKQELLEFVSAADRLERACSFMESEIGVLQVEKRIRNRVKRQM 660
            M + A+  +FPVLPLRDIVVFPHMIVPLFVGRDKSV+ALEDVM+DDKQILLV QKNA QDDP   DIY +GTIGTVLQLLKLPDGTVKVLVEG QRA+I +Y + +DFFQA AE++ D   D ++L+AL+R+VV+QFEQYIKLNKKIPPEVLVS+NQI+D  KL+DT+ASHLALKI EKQELLE  + +DRLE+  +FME EIGVLQVEKRIRN VKRQM
Sbjct:    1 MLELARGNLFPVLPLRDIVVFPHMIVPLFVGRDKSVRALEDVMKDDKQILLVTQKNAAQDDPTPPDIYSVGTIGTVLQLLKLPDGTVKVLVEGGQRARITKYADTEDFFQAHAEIVQDDDGDDRELDALARTVVSQFEQYIKLNKKIPPEVLVSINQIDDFSKLADTVASHLALKIPEKQELLESETVSDRLEKVYAFMEGEIGVLQVEKRIRNCVKRQM 220
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98470.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FLL1_9PROT4.700e-12390.45Lon protease n=1 Tax=Rhodospirillaceae bacterium T... [more]
A0A2S6QCF5_9PROT5.740e-11484.55Lon protease n=2 Tax=Alphaproteobacteria TaxID=282... [more]
A0A2D8G4E6_9PROT9.790e-11283.64Lon protease n=1 Tax=Alphaproteobacteria bacterium... [more]
A0A6N7FF28_9PROT5.030e-11075.91Endopeptidase La (Fragment) n=2 Tax=Alphaproteobac... [more]
A0A1N7IL06_9PROT2.290e-10578.34Lon protease n=2 Tax=Insolitispirillum peregrinum ... [more]
A0A352GNQ5_9PROT4.210e-10578.14Endopeptidase La (Fragment) n=1 Tax=Rhodospirillac... [more]
A4U0B9_9PROT1.290e-10477.27Lon protease n=4 Tax=Magnetospirillum TaxID=13134 ... [more]
A0A522WCS4_9PROT1.910e-10475.00Endopeptidase La (Fragment) n=1 Tax=Magnetospirill... [more]
A0A2S6TLJ4_9PROT4.470e-10477.42Lon protease (Fragment) n=1 Tax=Alphaproteobacteri... [more]
A0A7C7PHA7_9PROT6.200e-10474.55Endopeptidase La (Fragment) n=1 Tax=Kiloniellaceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98470contigL-digitata_M_contig98470:309..968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1430440.MGMSRv2_1329
Preferred namelon
PFAMsAAA,LON_substr_bdg,Lon_C
Model size660
Max annot lvl204441|Rhodospirillales
KEGG koko:K01338
KEGG Pathwayko04112,map04112
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.12e-105
EggNOG OGsCOG0466@1|root,COG0466@2|Bacteria,1MUV2@1224|Proteobacteria,2TR4E@28211|Alphaproteobacteria,2JQC9@204441|Rhodospirillales
EC3.4.21.53
DescriptionATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Cds size660
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408642.1500065-CDS-L-digitata_M_contig98470:308..9681682408642.1500065-CDS-L-digitata_M_contig98470:308..968Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig98470 309..968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98470.2.1prot_L-digitata_M_contig98470.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig98470 309..968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig98470.2.1

>prot_L-digitata_M_contig98470.2.1 ID=prot_L-digitata_M_contig98470.2.1|Name=mRNA_L-digitata_M_contig98470.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=220bp
MSDTAKTAIFPVLPLRDIVVFPHMIVPLFVGRDKSVKALEDVMQDDKQIL
LVAQKNAGQDDPAVEDIYEMGTIGTVLQLLKLPDGTVKVLVEGSQRAKIM
RYTENDDFFQAEAELLDDVVDDGKDLEALSRSVVTQFEQYIKLNKKIPPE
VLVSLNQIEDPGKLSDTIASHLALKISEKQELLEFVSAADRLERACSFME
SEIGVLQVEKRIRNRVKRQM
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mRNA from alignment at L-digitata_M_contig98470:309..968+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig98470.2.1 ID=mRNA_L-digitata_M_contig98470.2.1|Name=mRNA_L-digitata_M_contig98470.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=660bp|location=Sequence derived from alignment at L-digitata_M_contig98470:309..968+ (Laminaria digitata LdigPH10_18mv male)
ATGTCGGATACCGCCAAAACAGCGATTTTTCCGGTACTTCCCCTGCGGGA
TATCGTTGTGTTCCCGCACATGATCGTGCCGCTCTTTGTCGGCCGGGATA
AGTCCGTAAAAGCACTCGAAGACGTCATGCAGGACGATAAGCAGATCCTG
CTTGTCGCCCAGAAAAACGCAGGGCAGGACGATCCTGCCGTCGAAGATAT
CTATGAAATGGGCACCATCGGCACGGTGCTCCAGCTCCTAAAGTTGCCCG
ACGGCACTGTCAAAGTGCTGGTCGAAGGCAGCCAGCGCGCAAAGATCATG
CGCTACACCGAGAACGACGATTTCTTCCAGGCGGAGGCCGAACTTCTCGA
CGACGTCGTCGATGACGGCAAAGACCTCGAAGCGCTCAGCCGCTCGGTTG
TCACGCAGTTCGAGCAGTACATCAAACTGAACAAAAAAATTCCGCCCGAG
GTGCTGGTCTCACTCAACCAGATTGAGGACCCGGGCAAGCTGTCGGATAC
GATTGCCTCGCACCTGGCCCTCAAGATTTCCGAAAAACAGGAGCTGTTGG
AATTCGTTTCCGCCGCCGACCGGCTTGAGCGCGCGTGTTCGTTCATGGAG
TCTGAAATCGGCGTGCTTCAGGTCGAAAAGCGTATCCGTAACCGCGTAAA
GCGGCAGATG
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Coding sequence (CDS) from alignment at L-digitata_M_contig98470:309..968+

>mRNA_L-digitata_M_contig98470.2.1 ID=mRNA_L-digitata_M_contig98470.2.1|Name=mRNA_L-digitata_M_contig98470.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=660bp|location=Sequence derived from alignment at L-digitata_M_contig98470:309..968+ (Laminaria digitata LdigPH10_18mv male)
ATGTCGGATACCGCCAAAACAGCGATTTTTCCGGTACTTCCCCTGCGGGA
TATCGTTGTGTTCCCGCACATGATCGTGCCGCTCTTTGTCGGCCGGGATA
AGTCCGTAAAAGCACTCGAAGACGTCATGCAGGACGATAAGCAGATCCTG
CTTGTCGCCCAGAAAAACGCAGGGCAGGACGATCCTGCCGTCGAAGATAT
CTATGAAATGGGCACCATCGGCACGGTGCTCCAGCTCCTAAAGTTGCCCG
ACGGCACTGTCAAAGTGCTGGTCGAAGGCAGCCAGCGCGCAAAGATCATG
CGCTACACCGAGAACGACGATTTCTTCCAGGCGGAGGCCGAACTTCTCGA
CGACGTCGTCGATGACGGCAAAGACCTCGAAGCGCTCAGCCGCTCGGTTG
TCACGCAGTTCGAGCAGTACATCAAACTGAACAAAAAAATTCCGCCCGAG
GTGCTGGTCTCACTCAACCAGATTGAGGACCCGGGCAAGCTGTCGGATAC
GATTGCCTCGCACCTGGCCCTCAAGATTTCCGAAAAACAGGAGCTGTTGG
AATTCGTTTCCGCCGCCGACCGGCTTGAGCGCGCGTGTTCGTTCATGGAG
TCTGAAATCGGCGTGCTTCAGGTCGAAAAGCGTATCCGTAACCGCGTAAA
GCGGCAGATG
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