mRNA_L-digitata_M_contig98463.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig98463.2.1
Unique NamemRNA_L-digitata_M_contig98463.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig98463.2.1 vs. uniprot
Match: A0A059EEM9_9PROT (Uncharacterized protein n=4 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A059EEM9_9PROT)

HSP 1 Score: 111 bits (277), Expect = 1.030e-28
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 VQLSSTAFSKAKQTLADMFGGVSSAPRQGWNLAARDIRIEYVHTKMGLFWAFIEPL 168
            +QLSS AFSKAKQTLADMFGGVSSAPRQGWNLAARDIRIEYVHTKMGLFWAFIEPL
Sbjct:    1 MQLSSAAFSKAKQTLADMFGGVSSAPRQGWNLAARDIRIEYVHTKMGLFWAFIEPL 56
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98463.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A059EEM9_9PROT1.030e-2896.43Uncharacterized protein n=4 Tax=Hyphomonadaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98463contigL-digitata_M_contig98463:801..968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1207058.L53_01615
PFAMsABC2_membrane
Model size168
Max annot lvl1224|Proteobacteria
KEGG koko:K09690
KEGG TC3.A.1.103
KEGG Pathwayko02010,map02010
KEGG ModuleM00250
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.69e-29
EggNOG OGsCOG1682@1|root,COG1682@2|Bacteria,1N1G2@1224|Proteobacteria
DescriptionABC-2 type transporter
Cds size168
COG categoryU
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408641.891249-CDS-L-digitata_M_contig98463:800..9681682408641.891249-CDS-L-digitata_M_contig98463:800..968Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig98463 801..968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98463.2.1prot_L-digitata_M_contig98463.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig98463 801..968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig98463.2.1

>prot_L-digitata_M_contig98463.2.1 ID=prot_L-digitata_M_contig98463.2.1|Name=mRNA_L-digitata_M_contig98463.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=56bp
VQLSSTAFSKAKQTLADMFGGVSSAPRQGWNLAARDIRIEYVHTKMGLFW
AFIEPL
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mRNA from alignment at L-digitata_M_contig98463:801..968+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig98463.2.1 ID=mRNA_L-digitata_M_contig98463.2.1|Name=mRNA_L-digitata_M_contig98463.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=168bp|location=Sequence derived from alignment at L-digitata_M_contig98463:801..968+ (Laminaria digitata LdigPH10_18mv male)
GTGCAGTTGAGTTCAACGGCTTTCAGCAAGGCAAAGCAGACCCTCGCCGA
CATGTTCGGCGGAGTCTCCAGCGCACCACGACAGGGTTGGAACCTTGCCG
CCCGAGATATTCGCATCGAATATGTTCACACGAAGATGGGCCTGTTCTGG
GCTTTTATCGAGCCCCTC
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Coding sequence (CDS) from alignment at L-digitata_M_contig98463:801..968+

>mRNA_L-digitata_M_contig98463.2.1 ID=mRNA_L-digitata_M_contig98463.2.1|Name=mRNA_L-digitata_M_contig98463.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=168bp|location=Sequence derived from alignment at L-digitata_M_contig98463:801..968+ (Laminaria digitata LdigPH10_18mv male)
GTGCAGTTGAGTTCAACGGCTTTCAGCAAGGCAAAGCAGACCCTCGCCGA
CATGTTCGGCGGAGTCTCCAGCGCACCACGACAGGGTTGGAACCTTGCCG
CCCGAGATATTCGCATCGAATATGTTCACACGAAGATGGGCCTGTTCTGG
GCTTTTATCGAGCCCCTC
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