mRNA_L-digitata_M_contig98313.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig98313.1.1
Unique NamemRNA_L-digitata_M_contig98313.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig98313.1.1 vs. uniprot
Match: A0A0L9VDT1_PHAAN (Ferredoxin--NADP reductase, chloroplastic n=21 Tax=NPAAA clade TaxID=2231382 RepID=A0A0L9VDT1_PHAAN)

HSP 1 Score: 94.0 bits (232), Expect = 1.070e-21
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    4 YCTDFTSSNRYDLALSREQTNVAGGKMYVQDKVEEYADEIFERLDNGAHIYFCGLK 171
            Y TD+  + RYD ALSREQ N  GGKMYVQDK+EEY+DEIF+ LDNGAHIYFCGLK
Sbjct:  223 YLTDYPDNFRYDRALSREQKNKNGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLK 278          
BLAST of mRNA_L-digitata_M_contig98313.1.1 vs. uniprot
Match: A0A540KMA7_MALBA (Ferredoxin--NADP reductase, chloroplastic n=2 Tax=Malus baccata TaxID=106549 RepID=A0A540KMA7_MALBA)

HSP 1 Score: 93.6 bits (231), Expect = 1.090e-21
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    4 YCTDFTSSNRYDLALSREQTNVAGGKMYVQDKVEEYADEIFERLDNGAHIYFCGLK 171
            Y  D+  + RYD+ALSREQ N  GGKMYVQDK+EEY+DEIF+ LDNGAHIYFCGLK
Sbjct:  201 YLKDYPDNFRYDIALSREQKNQRGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLK 256          
BLAST of mRNA_L-digitata_M_contig98313.1.1 vs. uniprot
Match: A0A5K0YP66_9MAGN (NAD_binding_1 domain-containing protein (Fragment) n=10 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0YP66_9MAGN)

HSP 1 Score: 90.5 bits (223), Expect = 1.260e-21
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    4 YCTDFTSSNRYDLALSREQTNVAGGKMYVQDKVEEYADEIFERLDNGAHIYFCGLK 171
            Y  D+  + RYD+ALSR+Q N +GGKMYVQDK+EEY+DEIF+ LD GAHIYFCGLK
Sbjct:   71 YLRDYPDNFRYDVALSRQQKNKSGGKMYVQDKIEEYSDEIFKLLDEGAHIYFCGLK 126          
BLAST of mRNA_L-digitata_M_contig98313.1.1 vs. uniprot
Match: A0A392NRA8_9FABA (Ferredoxin--NADP root isozyme chloroplastic-like n=2 Tax=Hologalegina TaxID=2233838 RepID=A0A392NRA8_9FABA)

HSP 1 Score: 90.9 bits (224), Expect = 1.340e-21
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    4 YCTDFTSSNRYDLALSREQTNVAGGKMYVQDKVEEYADEIFERLDNGAHIYFCGLK 171
            Y  D+ ++ RYD ALSRE+ N  GGKMYVQDK+EEY+DEIF+ LDNGAHIYFCGLK
Sbjct:   88 YLNDYPNNFRYDRALSREEKNRNGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLK 143          
BLAST of mRNA_L-digitata_M_contig98313.1.1 vs. uniprot
Match: A0A448ZLL7_9STRA (Ferredoxin--NADP(+) reductase n=3 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448ZLL7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.750e-21
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1
Query:   16 FTSSNRYDLALSREQTNVAGGKMYVQDKVEEYADEIFERLDNGAHIYFCGLK 171
            F  + R D ALSREQTNV GGKMY+QDKVEEYADE+FE+L+NGAHIYFCGLK
Sbjct:  249 FPENFRLDYALSREQTNVKGGKMYIQDKVEEYADEVFEKLENGAHIYFCGLK 300          
BLAST of mRNA_L-digitata_M_contig98313.1.1 vs. uniprot
Match: A0A5J4ZLA1_9ASTE (Ferredoxin--NADP reductase, chloroplastic n=2 Tax=Nyssaceae TaxID=4289 RepID=A0A5J4ZLA1_9ASTE)

HSP 1 Score: 92.8 bits (229), Expect = 3.360e-21
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    4 YCTDFTSSNRYDLALSREQTNVAGGKMYVQDKVEEYADEIFERLDNGAHIYFCGLK 171
            Y  D+  + RYD ALSREQ N +GGKMYVQDK+EEY+DEIF+ LDNGAHIYFCGLK
Sbjct:  234 YLQDYPDNFRYDRALSREQKNKSGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLK 289          
BLAST of mRNA_L-digitata_M_contig98313.1.1 vs. uniprot
Match: A0A6T6FTN4_9STRA (Ferredoxin--NADP(+) reductase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6FTN4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.840e-21
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1
Query:   13 DFTSSNRYDLALSREQTNVAGGKMYVQDKVEEYADEIFERLDNGAHIYFCGLK 171
            +F  + R D ALSREQTN +GGKMY+QDKVEEYADEIFE+L+NGAHIYFCGLK
Sbjct:  248 EFPDNFRIDYALSREQTNKSGGKMYIQDKVEEYADEIFEKLENGAHIYFCGLK 300          
BLAST of mRNA_L-digitata_M_contig98313.1.1 vs. uniprot
Match: B7FFT6_MEDTR (NAD_binding_1 domain-containing protein n=2 Tax=fabids TaxID=91835 RepID=B7FFT6_MEDTR)

HSP 1 Score: 90.1 bits (222), Expect = 3.850e-21
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    4 YCTDFTSSNRYDLALSREQTNVAGGKMYVQDKVEEYADEIFERLDNGAHIYFCGLK 171
            Y  D+  + RYD ALSRE+ N  GGKMYVQDK+EEY+DEIF+ LDNGAHIYFCGLK
Sbjct:  104 YLKDYPENFRYDRALSREEKNRNGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLK 159          
BLAST of mRNA_L-digitata_M_contig98313.1.1 vs. uniprot
Match: A0A1U7Z3P5_NELNU (Ferredoxin--NADP reductase, chloroplastic n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7Z3P5_NELNU)

HSP 1 Score: 93.2 bits (230), Expect = 4.070e-21
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    1 MYCTDFTSSNRYDLALSREQTNVAGGKMYVQDKVEEYADEIFERLDNGAHIYFCGLK 171
            MY  D+    RYDLALSREQ N  GGKMYVQDK+EEY+DEIF+ LD GAHIYFCGLK
Sbjct:  282 MYLQDYPDHFRYDLALSREQKNKRGGKMYVQDKIEEYSDEIFKLLDKGAHIYFCGLK 338          
BLAST of mRNA_L-digitata_M_contig98313.1.1 vs. uniprot
Match: A0A6T9DV52_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A6T9DV52_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 5.130e-21
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1
Query:   31 RYDLALSREQTNVAGGKMYVQDKVEEYADEIFERLDNGAHIYFCGLK 171
            R D ALSREQ NV GGKMY+QDKV EYADEIFER+DNGAH+YFCGLK
Sbjct:   53 RLDYALSREQLNVNGGKMYIQDKVAEYADEIFERMDNGAHMYFCGLK 99          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98313.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L9VDT1_PHAAN1.070e-2175.00Ferredoxin--NADP reductase, chloroplastic n=21 Tax... [more]
A0A540KMA7_MALBA1.090e-2173.21Ferredoxin--NADP reductase, chloroplastic n=2 Tax=... [more]
A0A5K0YP66_9MAGN1.260e-2169.64NAD_binding_1 domain-containing protein (Fragment)... [more]
A0A392NRA8_9FABA1.340e-2171.43Ferredoxin--NADP root isozyme chloroplastic-like n... [more]
A0A448ZLL7_9STRA2.750e-2178.85Ferredoxin--NADP(+) reductase n=3 Tax=Pseudo-nitzs... [more]
A0A5J4ZLA1_9ASTE3.360e-2173.21Ferredoxin--NADP reductase, chloroplastic n=2 Tax=... [more]
A0A6T6FTN4_9STRA3.840e-2177.36Ferredoxin--NADP(+) reductase n=1 Tax=Craspedostau... [more]
B7FFT6_MEDTR3.850e-2171.43NAD_binding_1 domain-containing protein n=2 Tax=fa... [more]
A0A1U7Z3P5_NELNU4.070e-2173.68Ferredoxin--NADP reductase, chloroplastic n=2 Tax=... [more]
A0A6T9DV52_9EUKA5.130e-2182.98Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98313contigL-digitata_M_contig98313:303..473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog225117.XP_009344407.1
PFAMsNAD_binding_1
Model size171
Max annot lvl35493|Streptophyta
KEGG koko:K02641
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.9e-22
EggNOG OGsCOG0369@1|root,KOG1158@2759|Eukaryota,37RI6@33090|Viridiplantae,3GAM0@35493|Streptophyta,4JIVN@91835|fabids
EC1.18.1.2
DescriptionFerredoxin-NADP reductase
Cds size171
COG categoryC
BRITEko00000,ko00001,ko00194,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408640.4378603-CDS-L-digitata_M_contig98313:302..4731682408640.4378603-CDS-L-digitata_M_contig98313:302..473Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig98313 303..473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98313.1.1prot_L-digitata_M_contig98313.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig98313 303..473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig98313.1.1

>prot_L-digitata_M_contig98313.1.1 ID=prot_L-digitata_M_contig98313.1.1|Name=mRNA_L-digitata_M_contig98313.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=57bp
MYCTDFTSSNRYDLALSREQTNVAGGKMYVQDKVEEYADEIFERLDNGAH
IYFCGLK
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mRNA from alignment at L-digitata_M_contig98313:303..473-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig98313.1.1 ID=mRNA_L-digitata_M_contig98313.1.1|Name=mRNA_L-digitata_M_contig98313.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=171bp|location=Sequence derived from alignment at L-digitata_M_contig98313:303..473- (Laminaria digitata LdigPH10_18mv male)
ATGTACTGCACTGATTTTACATCCTCAAACAGGTACGACCTAGCCCTCTC TCGGGAGCAAACGAACGTCGCGGGGGGCAAGATGTACGTGCAGGACAAGG TGGAGGAGTACGCCGACGAGATATTTGAGCGCCTGGACAATGGTGCCCAC ATATACTTCTGCGGGCTAAAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig98313:303..473-

>mRNA_L-digitata_M_contig98313.1.1 ID=mRNA_L-digitata_M_contig98313.1.1|Name=mRNA_L-digitata_M_contig98313.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=171bp|location=Sequence derived from alignment at L-digitata_M_contig98313:303..473- (Laminaria digitata LdigPH10_18mv male)
ATGTACTGCACTGATTTTACATCCTCAAACAGGTACGACCTAGCCCTCTC
TCGGGAGCAAACGAACGTCGCGGGGGGCAAGATGTACGTGCAGGACAAGG
TGGAGGAGTACGCCGACGAGATATTTGAGCGCCTGGACAATGGTGCCCAC
ATATACTTCTGCGGGCTAAAG
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