mRNA_L-digitata_M_contig10250.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10250.2.1
Unique NamemRNA_L-digitata_M_contig10250.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10250.2.1 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.030e-12
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   46 GVSYVKLTAPVSIPLSLDLSRFCTRYTGNPPVDELGQAVESLKALGLPPTP 198
            GVSYVKL +PVS+PL LDL RFC+ YTGN P ++LG+ V+SL  LG+P  P
Sbjct:  985 GVSYVKLASPVSVPLELDLERFCSGYTGNAPAEDLGKQVDSLDGLGIPRVP 1035
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BLAST of mRNA_L-digitata_M_contig10250.2.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 6.750e-12
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   46 GVSYVKLTAPVSIPLSLDLSRFCTRYTGNPPVDELGQAVESLKALGLPP 192
            GVSYVKL++PVS+PL LDL RFC+ YTGN P ++LG+ V+SL  LG+ P
Sbjct:  886 GVSYVKLSSPVSVPLELDLERFCSGYTGNAPAEDLGKQVDSLDGLGILP 934
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10250.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUE2_9PHAE1.030e-1262.75USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2P5_ECTSI6.750e-1263.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10250contigL-digitata_M_contig10250:1644..2226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2P5
PFAMsUCH
Model size277
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.11e-12
EggNOG OGs2EX8U@1|root,2SYYR@2759|Eukaryota
DescriptionUbiquitin carboxyl-terminal hydrolase
Cds size273
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406630.1942487-CDS-L-digitata_M_contig10250:1643..17991682406630.1942487-CDS-L-digitata_M_contig10250:1643..1799Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10250 1644..1799 +
1682406630.2038348-CDS-L-digitata_M_contig10250:2107..22241682406630.2038348-CDS-L-digitata_M_contig10250:2107..2224Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10250 2108..2224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10250.2.1prot_L-digitata_M_contig10250.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10250 1644..2224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10250.2.1

>prot_L-digitata_M_contig10250.2.1 ID=prot_L-digitata_M_contig10250.2.1|Name=mRNA_L-digitata_M_contig10250.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=91bp
SGGGGTGSGSGSGSSGVSYVKLTAPVSIPLSLDLSRFCTRYTGNPPVDEL
GQAVESLKALGLPPTPAETAPAPGSNSSALAAAVTTARAAA
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mRNA from alignment at L-digitata_M_contig10250:1644..2226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10250.2.1 ID=mRNA_L-digitata_M_contig10250.2.1|Name=mRNA_L-digitata_M_contig10250.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=583bp|location=Sequence derived from alignment at L-digitata_M_contig10250:1644..2226+ (Laminaria digitata LdigPH10_18mv male)
AGCGGCGGTGGGGGCACGGGGAGCGGCAGCGGAAGCGGGTCGTCGGGCGT
GTCGTACGTGAAGCTGACGGCGCCGGTGTCCATTCCGTTAAGTCTGGACT
TGTCACGGTTCTGCACGAGGTACACGGGCAACCCGCCAGTGGACGAGCTA
GGGCAGGTGGGTCGTCGTTTGGGGGGCGGGCGTGTAAATGGTCCGAATTC
GATTGACCAGCCCTGAAAATACTTTTTGTTGTTGAAGTACTGGACGTTGT
TGCGTATCGATGCCAGGTACGAAACAGAGTAGTCCAGGATGCCTGGTGGT
GATGATTATGATGATGACGATGATGGTGATGAGGGGTGATGATGGTGACG
ATGATGATATGTAGAGTGTGATCATATCGACCCCGCTGCCGCCGCCCCCG
CCGCCGCCAAAAATCATATTGACGCCGCTAACACCGCTGCCGCCGCCACC
GTCGCTGTCGCCAGGCGGTGGAGTCCTTGAAGGCGTTGGGGCTTCCTCCC
ACCCCCGCGGAAACCGCGCCCGCGCCTGGGTCTAACTCCTCGGCCCTCGC
CGCGGCAGTCACAACAGCACGAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at L-digitata_M_contig10250:1644..2226+

>mRNA_L-digitata_M_contig10250.2.1 ID=mRNA_L-digitata_M_contig10250.2.1|Name=mRNA_L-digitata_M_contig10250.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=273bp|location=Sequence derived from alignment at L-digitata_M_contig10250:1644..2226+ (Laminaria digitata LdigPH10_18mv male)
AGCGGCGGTGGGGGCACGGGGAGCGGCAGCGGAAGCGGGTCGTCGGGCGT
GTCGTACGTGAAGCTGACGGCGCCGGTGTCCATTCCGTTAAGTCTGGACT
TGTCACGGTTCTGCACGAGGTACACGGGCAACCCGCCAGTGGACGAGCTA
GGGCAGGCGGTGGAGTCCTTGAAGGCGTTGGGGCTTCCTCCCACCCCCGC
GGAAACCGCGCCCGCGCCTGGGTCTAACTCCTCGGCCCTCGCCGCGGCAG
TCACAACAGCACGAGCAGCAGCA
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