mRNA_L-digitata_M_contig10228.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.610e-20 Identity = 63/170 (37.06%), Postives = 88/170 (51.76%), Query Frame = 1
Query: 1 GNGLCLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATW-------------KVHTEFNDKRLSEDGEV--------------LYYPSNMNVLDSVLWPISLRKLSFGDDFDQPI 429
GN CL+AF VALNQAC G +K WYVST+ LQL SL+ C ACR V TLHV+++ + TP +W P + + C+ SRVPVV+ TW +V + +R + + + S+M V ++ WP SL++LSFG F+Q I
Sbjct: 5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQ-TPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTV-NTASWPASLQQLSFGCGFNQAI 172
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 100 bits (250), Expect = 2.700e-20 Identity = 57/143 (39.86%), Postives = 79/143 (55.24%), Query Frame = 1
Query: 13 CLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATWKVHTEFNDKRL-------SEDGEVLYYPSNMNVLDSVLWPISLRKLSFGDDFD 420
CL+AF +AL+QAC GG+K WY ST+ LQL SLD C+ACR + LHV + +TPR +W RT+ +P + SRVPVV+ L TW + E ++ SE E+L ++ V+WP L +L D D
Sbjct: 11 CLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHV-DDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLTQLVLYTDSD 152
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.190e-19 Identity = 56/141 (39.72%), Postives = 78/141 (55.32%), Query Frame = 1
Query: 1 GNGLCLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATWKVHTEFNDKRLSEDGEVLYYP------SNMNVLDSVLWPISLRKLSF 405
G G L+ VALNQAC G +K WYVST+ LQL SL+ C ACR+ LHV +R + TP +W RTS P E C +RVP V+ L TW + + +R + + + + S ++SV+WP SL++L F
Sbjct: 85 GGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVR-EDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWPESLKRLVF 224
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 5.930e-18 Identity = 62/169 (36.69%), Postives = 80/169 (47.34%), Query Frame = 1
Query: 1 GNGLCLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATWKVHTEF------------NDKRLSEDGEVLYYPSNMN--------------VLDSVLWPISLRKLSFGDDFDQPI 429
G CL+AF VAL QA G K WYVST+ LQL SL+FC ACR+ + VQI ++TP +W PR S E C+ SRVP V+ W + E ++ R P M ++SV WP L++LSFGD F+QPI
Sbjct: 25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIH-RQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQPI 192
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 1.520e-14 Identity = 60/155 (38.71%), Postives = 81/155 (52.26%), Query Frame = 1
Query: 1 GNGLCLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGS-------RVPVVKMLAATWKVHTEFNDKRLSEDG----EVLYYPSNMN-VLDSVLWPISLRKLSFGDDFDQPI 429
G CL+AF VALNQAC GG WYVST +LQL SL FC ACR+V T+H+++ + TP ++ A AV + GS RVP ++ TW++ E R + G E+ +N +D +W +R LS G FDQPI
Sbjct: 26 GPSRCLDAFKVALNQACDGG--GWYVSTEQLQLSSLPFCVACRSVPTMHLKV-DRSTPARLFSGDDDAA----AVRDKGHGSSKRVMAARVPALRARKVTWQLSGE--TPRCTGVGLSSVELFVLGDAVNDSMDEAVWSDGMRSLSLGQMFDQPI 171
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5KVM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 1.450e-13 Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1
Query: 13 CLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVV 261
C +AF VAL+QAC GG+K Y ST+ L L SLD C+A R+ +TLHV+++ + TPR W P +P + + SRVPVV
Sbjct: 22 CFDAFVVALSQACEGGNKRSYTSTLELPLASLDICRAGRSTSTLHVRVQYQ-TPRSFWSPPKVQLRPDEGSSKIRLSSRVPVV 103
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5JF56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF56_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 8.810e-11 Identity = 51/139 (36.69%), Postives = 68/139 (48.92%), Query Frame = 1
Query: 13 CLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATWKVHTEFNDKRLSEDGEVLYYPSNMNVLDSVLWPISLRKLSFGDDFDQPI 429
CL+AF VALNQ+C G K WY S LQL SL FC ACR V + + K TP +W P P+ V+ +RVP +++ WK+ TE D + P SLR+++FG DF+Q I
Sbjct: 36 CLDAFVVALNQSCDG--KKWYTSIAGLQLASLAFCVACRNVLAPCLTV-DKGTPLRLW---CGPCTTPLEVLT--TVTRVPAIRVREVVWKL-TERKD--------------------GIALPSSLRRITFGRDFNQRI 145
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5K2L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 7.970e-10 Identity = 52/167 (31.14%), Postives = 74/167 (44.31%), Query Frame = 1
Query: 1 GNGLCLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATWKVHTE-------FNDKRLSEDGEVLYYPSNMNV---------------LDSVL----WPISLRKLSFGDDFDQ 423
G G C++AF VALN+ C GG++ WY ST+ LQ SL+FC ACR V T H R G+ SR PVV+ + TW + + +R S+ + S N+ LD+ + WP SL++LSFG F++
Sbjct: 15 GRGECVDAFIVALNRTCDGGEQRWYASTLELQPVSLEFCVACRRVPTSHSTSTVGRLVSGV--------------------SRAPVVRAYSLTWALSMDVLLQSCAMELQRGSKYRRSGGHSSAANLASMLWLQRLKRLVLELDTPVITASWPASLQQLSFGYKFNK 161
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 3.960e-9 Identity = 48/171 (28.07%), Postives = 77/171 (45.03%), Query Frame = 1
Query: 19 EAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQP----------------------------PIAVVEPCVGSRVPVVKMLAATWKVHTEFNDKRLSEDG----EVLYYPSNMNVLD--SVLWPISLRKLSFGDDFDQPI 429
+A +A++QA G K WY ST+ L+L SL+ C+ACR V T+HV++ TP +W P P + + + SRVPV + L TW + TE + ++ + E L +++ D SV WP +L++L+ F+ I
Sbjct: 11 DALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRVDAN-TPPSLWSPHAMPTRAHTRSSKTRAXXXXXXXXXXXXXXXXXXXXXXXXKARISSRVPVGQALGLTWALPTEILLQGVAVELWTKLEFLQLRESLSPSDLVSVAWPQNLKRLALETGFEAAI 180
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: D8LCS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS9_ECTSI) HSP 1 Score: 62.8 bits (151), Expect = 1.020e-7 Identity = 48/149 (32.21%), Postives = 68/149 (45.64%), Query Frame = 1
Query: 13 CLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATWK--VHTEFNDKRLSEDGEVLYYPSNMNVL--------DSVLWPISLRKLSFGDDFDQPI 429
CL+A VAL A G + WY T +LQL SLDFC ACRAV T+H+ + G P R A ++ SRVP + TW + + + D VL + + D + P +L+ L+FG +D+PI
Sbjct: 85 CLDALIVALTNA--GDGQGWYTPTTQLQLASLDFCTACRAVPTVHLTVD------GDVPARLK------AGIDNGGASRVPAFRPRCVTWNKPIAALRGEDDVFADVRVLVLGHGLGRVGVRFNRWVDGLQLPPALQDLTFGQWYDRPI 219 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10228.2.1 >prot_L-digitata_M_contig10228.2.1 ID=prot_L-digitata_M_contig10228.2.1|Name=mRNA_L-digitata_M_contig10228.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=283bp GNGLCLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVback to top mRNA from alignment at L-digitata_M_contig10228:2339..3189- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10228.2.1 ID=mRNA_L-digitata_M_contig10228.2.1|Name=mRNA_L-digitata_M_contig10228.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=851bp|location=Sequence derived from alignment at L-digitata_M_contig10228:2339..3189- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10228:2339..3189- >mRNA_L-digitata_M_contig10228.2.1 ID=mRNA_L-digitata_M_contig10228.2.1|Name=mRNA_L-digitata_M_contig10228.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=849bp|location=Sequence derived from alignment at L-digitata_M_contig10228:2339..3189- (Laminaria digitata LdigPH10_18mv male)back to top |