mRNA_L-digitata_M_contig10228.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10228.2.1
Unique NamemRNA_L-digitata_M_contig10228.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.610e-20
Identity = 63/170 (37.06%), Postives = 88/170 (51.76%), Query Frame = 1
Query:    1 GNGLCLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATW-------------KVHTEFNDKRLSEDGEV--------------LYYPSNMNVLDSVLWPISLRKLSFGDDFDQPI 429
            GN  CL+AF VALNQAC G +K WYVST+ LQL SL+ C ACR V TLHV+++ + TP  +W P  +         + C+ SRVPVV+    TW             +V +    +R +                   + + S+M V ++  WP SL++LSFG  F+Q I
Sbjct:    5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQ-TPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTV-NTASWPASLQQLSFGCGFNQAI 172          
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.700e-20
Identity = 57/143 (39.86%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   13 CLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATWKVHTEFNDKRL-------SEDGEVLYYPSNMNVLDSVLWPISLRKLSFGDDFD 420
            CL+AF +AL+QAC GG+K WY ST+ LQL SLD C+ACR  + LHV +   +TPR +W  RT+  +P        + SRVPVV+ L  TW +  E   ++        SE  E+L      ++   V+WP  L +L    D D
Sbjct:   11 CLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHV-DDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLTQLVLYTDSD 152          
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.190e-19
Identity = 56/141 (39.72%), Postives = 78/141 (55.32%), Query Frame = 1
Query:    1 GNGLCLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATWKVHTEFNDKRLSEDGEVLYYP------SNMNVLDSVLWPISLRKLSF 405
            G G  L+   VALNQAC G +K WYVST+ LQL SL+ C ACR+   LHV +R + TP  +W  RTS   P     E C  +RVP V+ L  TW +  +   +R + + + +         S    ++SV+WP SL++L F
Sbjct:   85 GGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVR-EDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWPESLKRLVF 224          
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 5.930e-18
Identity = 62/169 (36.69%), Postives = 80/169 (47.34%), Query Frame = 1
Query:    1 GNGLCLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATWKVHTEF------------NDKRLSEDGEVLYYPSNMN--------------VLDSVLWPISLRKLSFGDDFDQPI 429
            G   CL+AF VAL QA  G  K WYVST+ LQL SL+FC ACR+  +  VQI  ++TP  +W PR S         E C+ SRVP V+     W +  E             ++ R          P  M                ++SV WP  L++LSFGD F+QPI
Sbjct:   25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIH-RQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQPI 192          
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.520e-14
Identity = 60/155 (38.71%), Postives = 81/155 (52.26%), Query Frame = 1
Query:    1 GNGLCLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGS-------RVPVVKMLAATWKVHTEFNDKRLSEDG----EVLYYPSNMN-VLDSVLWPISLRKLSFGDDFDQPI 429
            G   CL+AF VALNQAC GG   WYVST +LQL SL FC ACR+V T+H+++  + TP  ++      A    AV +   GS       RVP ++    TW++  E    R +  G    E+      +N  +D  +W   +R LS G  FDQPI
Sbjct:   26 GPSRCLDAFKVALNQACDGG--GWYVSTEQLQLSSLPFCVACRSVPTMHLKV-DRSTPARLFSGDDDAA----AVRDKGHGSSKRVMAARVPALRARKVTWQLSGE--TPRCTGVGLSSVELFVLGDAVNDSMDEAVWSDGMRSLSLGQMFDQPI 171          
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5KVM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.450e-13
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   13 CLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVV 261
            C +AF VAL+QAC GG+K  Y ST+ L L SLD C+A R+ +TLHV+++ + TPR  W P     +P     +  + SRVPVV
Sbjct:   22 CFDAFVVALSQACEGGNKRSYTSTLELPLASLDICRAGRSTSTLHVRVQYQ-TPRSFWSPPKVQLRPDEGSSKIRLSSRVPVV 103          
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5JF56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF56_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.810e-11
Identity = 51/139 (36.69%), Postives = 68/139 (48.92%), Query Frame = 1
Query:   13 CLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATWKVHTEFNDKRLSEDGEVLYYPSNMNVLDSVLWPISLRKLSFGDDFDQPI 429
            CL+AF VALNQ+C G  K WY S   LQL SL FC ACR V    + +  K TP  +W     P   P+ V+     +RVP +++    WK+ TE  D                     +  P SLR+++FG DF+Q I
Sbjct:   36 CLDAFVVALNQSCDG--KKWYTSIAGLQLASLAFCVACRNVLAPCLTV-DKGTPLRLW---CGPCTTPLEVLT--TVTRVPAIRVREVVWKL-TERKD--------------------GIALPSSLRRITFGRDFNQRI 145          
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5K2L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 7.970e-10
Identity = 52/167 (31.14%), Postives = 74/167 (44.31%), Query Frame = 1
Query:    1 GNGLCLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATWKVHTE-------FNDKRLSEDGEVLYYPSNMNV---------------LDSVL----WPISLRKLSFGDDFDQ 423
            G G C++AF VALN+ C GG++ WY ST+ LQ  SL+FC ACR V T H      R   G+                    SR PVV+  + TW +  +          +R S+      + S  N+               LD+ +    WP SL++LSFG  F++
Sbjct:   15 GRGECVDAFIVALNRTCDGGEQRWYASTLELQPVSLEFCVACRRVPTSHSTSTVGRLVSGV--------------------SRAPVVRAYSLTWALSMDVLLQSCAMELQRGSKYRRSGGHSSAANLASMLWLQRLKRLVLELDTPVITASWPASLQQLSFGYKFNK 161          
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.960e-9
Identity = 48/171 (28.07%), Postives = 77/171 (45.03%), Query Frame = 1
Query:   19 EAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQP----------------------------PIAVVEPCVGSRVPVVKMLAATWKVHTEFNDKRLSEDG----EVLYYPSNMNVLD--SVLWPISLRKLSFGDDFDQPI 429
            +A  +A++QA  G  K WY ST+ L+L SL+ C+ACR V T+HV++    TP  +W P   P +                                  +  + SRVPV + L  TW + TE   + ++ +     E L    +++  D  SV WP +L++L+    F+  I
Sbjct:   11 DALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRVDAN-TPPSLWSPHAMPTRAHTRSSKTRAXXXXXXXXXXXXXXXXXXXXXXXXKARISSRVPVGQALGLTWALPTEILLQGVAVELWTKLEFLQLRESLSPSDLVSVAWPQNLKRLALETGFEAAI 180          
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Match: D8LCS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS9_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.020e-7
Identity = 48/149 (32.21%), Postives = 68/149 (45.64%), Query Frame = 1
Query:   13 CLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHVQIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATWK--VHTEFNDKRLSEDGEVLYYPSNMNVL--------DSVLWPISLRKLSFGDDFDQPI 429
            CL+A  VAL  A  G  + WY  T +LQL SLDFC ACRAV T+H+ +       G  P R        A ++    SRVP  +    TW   +     +  +  D  VL     +  +        D +  P +L+ L+FG  +D+PI
Sbjct:   85 CLDALIVALTNA--GDGQGWYTPTTQLQLASLDFCTACRAVPTVHLTVD------GDVPARLK------AGIDNGGASRVPAFRPRCVTWNKPIAALRGEDDVFADVRVLVLGHGLGRVGVRFNRWVDGLQLPPALQDLTFGQWYDRPI 219          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10228.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KNI6_9PHAE1.610e-2037.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LIJ3_9PHAE2.700e-2039.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTK8_ECTSI1.190e-1939.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8K9_9PHAE5.930e-1836.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFC0_9PHAE1.520e-1438.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVM8_9PHAE1.450e-1346.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF56_9PHAE8.810e-1136.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2L2_9PHAE7.970e-1031.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXX4_9PHAE3.960e-928.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS9_ECTSI1.020e-732.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10228contigL-digitata_M_contig10228:2339..3189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size851
Hectar predicted targeting categoryother localisation
Exons1
Cds size849
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406628.01446-CDS-L-digitata_M_contig10228:2340..31891682406628.01446-CDS-L-digitata_M_contig10228:2340..3189Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10228 2341..3189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10228.2.1prot_L-digitata_M_contig10228.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10228 2341..3189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10228.2.1

>prot_L-digitata_M_contig10228.2.1 ID=prot_L-digitata_M_contig10228.2.1|Name=mRNA_L-digitata_M_contig10228.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=283bp
GNGLCLEAFTVALNQACWGGDKSWYVSTMRLQLGSLDFCKACRAVATLHV
QIRTKRTPRGIWPPRTSPAQPPIAVVEPCVGSRVPVVKMLAATWKVHTEF
NDKRLSEDGEVLYYPSNMNVLDSVLWPISLRKLSFGDDFDQPIDKVVWPA
LLQSLFLGDCFTHSINEVTWPASLRELFLGESFNKDVDGVCWPASLRELH
FGVSFNQDIAEVAWPDSLRELSLGDSFNQRIVEVVWPPSLRSMSFGEEFN
QAIAGVMWPASLQQLSFGKHFNEPIAGVAWPAS
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mRNA from alignment at L-digitata_M_contig10228:2339..3189-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10228.2.1 ID=mRNA_L-digitata_M_contig10228.2.1|Name=mRNA_L-digitata_M_contig10228.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=851bp|location=Sequence derived from alignment at L-digitata_M_contig10228:2339..3189- (Laminaria digitata LdigPH10_18mv male)
GGGAATGGCCTGTGCTTGGAAGCCTTCACAGTCGCCTTGAATCAAGCATG CTGGGGAGGAGATAAATCCTGGTACGTGTCTACGATGCGTCTACAACTGG GTTCACTGGACTTCTGTAAAGCATGCCGGGCCGTTGCGACTTTGCACGTC CAAATACGTACGAAGCGTACCCCTCGCGGCATCTGGCCCCCTCGGACCTC ACCGGCCCAGCCGCCCATCGCTGTTGTGGAACCTTGTGTCGGGAGCCGTG TGCCGGTTGTGAAAATGCTCGCTGCTACGTGGAAGGTTCATACGGAATTT AATGATAAACGACTTTCGGAAGATGGAGAGGTGCTGTATTATCCGTCCAA CATGAACGTGTTGGACTCTGTACTATGGCCGATCTCCCTCCGAAAGCTAT CGTTCGGGGACGATTTCGACCAACCCATCGACAAGGTCGTGTGGCCGGCC TTGCTGCAGTCGTTGTTTCTCGGCGACTGCTTCACCCACTCAATTAATGA AGTGACGTGGCCGGCTTCCTTGCGAGAGCTATTCCTCGGGGAATCATTTA ACAAAGACGTTGATGGAGTATGTTGGCCGGCCTCCCTGCGAGAGCTACAC TTCGGGGTTTCGTTTAACCAAGACATCGCTGAAGTGGCGTGGCCGGACTC CCTGCGAGAGCTATCGCTCGGGGATAGTTTTAATCAACGAATCGTGGAAG TCGTGTGGCCTCCCTCCCTCCGAAGTATGTCGTTCGGGGAAGAGTTTAAT CAAGCCATCGCTGGAGTGATGTGGCCGGCTTCCCTGCAACAGTTATCGTT TGGGAAGCATTTCAATGAACCCATCGCAGGAGTGGCATGGCCGGCGTCCC T
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Coding sequence (CDS) from alignment at L-digitata_M_contig10228:2339..3189-

>mRNA_L-digitata_M_contig10228.2.1 ID=mRNA_L-digitata_M_contig10228.2.1|Name=mRNA_L-digitata_M_contig10228.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=849bp|location=Sequence derived from alignment at L-digitata_M_contig10228:2339..3189- (Laminaria digitata LdigPH10_18mv male)
GGGAATGGCCTGTGCTTGGAAGCCTTCACAGTCGCCTTGAATCAAGCATG
CTGGGGAGGAGATAAATCCTGGTACGTGTCTACGATGCGTCTACAACTGG
GTTCACTGGACTTCTGTAAAGCATGCCGGGCCGTTGCGACTTTGCACGTC
CAAATACGTACGAAGCGTACCCCTCGCGGCATCTGGCCCCCTCGGACCTC
ACCGGCCCAGCCGCCCATCGCTGTTGTGGAACCTTGTGTCGGGAGCCGTG
TGCCGGTTGTGAAAATGCTCGCTGCTACGTGGAAGGTTCATACGGAATTT
AATGATAAACGACTTTCGGAAGATGGAGAGGTGCTGTATTATCCGTCCAA
CATGAACGTGTTGGACTCTGTACTATGGCCGATCTCCCTCCGAAAGCTAT
CGTTCGGGGACGATTTCGACCAACCCATCGACAAGGTCGTGTGGCCGGCC
TTGCTGCAGTCGTTGTTTCTCGGCGACTGCTTCACCCACTCAATTAATGA
AGTGACGTGGCCGGCTTCCTTGCGAGAGCTATTCCTCGGGGAATCATTTA
ACAAAGACGTTGATGGAGTATGTTGGCCGGCCTCCCTGCGAGAGCTACAC
TTCGGGGTTTCGTTTAACCAAGACATCGCTGAAGTGGCGTGGCCGGACTC
CCTGCGAGAGCTATCGCTCGGGGATAGTTTTAATCAACGAATCGTGGAAG
TCGTGTGGCCTCCCTCCCTCCGAAGTATGTCGTTCGGGGAAGAGTTTAAT
CAAGCCATCGCTGGAGTGATGTGGCCGGCTTCCCTGCAACAGTTATCGTT
TGGGAAGCATTTCAATGAACCCATCGCAGGAGTGGCATGGCCGGCGTCC
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