mRNA_L-digitata_M_contig102258.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-digitata_M_contig102258.1.1
Unique Name	mRNA_L-digitata_M_contig102258.1.1
Type	mRNA
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))

Homology

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BLAST of mRNA_L-digitata_M_contig102258.1.1 vs. uniprot
Match: A0A6H5KCG4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG4_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.710e-34
Identity = 67/162 (41.36%), Postives = 97/162 (59.88%), Query Frame = 1

Query:    1 SPTNWWNTIDQRLVNVGFNSPNLDLCVYTYSERGAIYILTLYIDDVLLLGKYVLVLSRVKQKLMSRFSMADMGDVSLVLGTSATRDRGKETVTITQGRYTKSLLERYCVASCNSTYTPAVGKELSLGQPEEMLLSKEEKQRFQAIIGSAMYLGHATRYDIIH 486
            SP+ W + I+ RL+  G+   + D CVY +     + IL +Y+DD+L+      ++SR K++LM  F M DMG+V  V+G    RD    T+ I+QG Y + +L+RY +   N   TP  G ELS  QP++ LL  E+KQRFQAI GS +YL   TRYD+ +
Sbjct:   64 SPSLWNDAINDRLIIFGWQRTHSDPCVYIFVSGDELTILAIYVDDILITEGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSY 225

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BLAST of mRNA_L-digitata_M_contig102258.1.1 vs. uniprot
Match: A0A6H5JW03_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW03_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 4.650e-33
Identity = 67/159 (42.14%), Postives = 96/159 (60.38%), Query Frame = 1

Query:    1 SPTNWWNTIDQRLVNVGFNSPNLDLCVYTYSERGAIYILTLYIDDVLLLGKYVLVLSRVKQKLMSRFSMADMGDVSLVLGTSATRDRGKETVTITQGRYTKSLLERYCVASCNSTYTPAVGKELSLGQPEEMLLSKEEKQRFQAIIGSAMYLGHATRYD 477
            SP+ W + I+ RL+  G+   + D CVY +  R  + IL +Y+DD+L+ G    ++S  K++LM  F M DMG+V  V+G +  RD    T+ I+QG Y + + +RY +   N   TP  G ELS  QP++ LL  E+KQRFQAI GS +YL   TRYD
Sbjct:   64 SPSLWNDAINDRLIIFGWQRAHSDPCVYIFVRRDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIAVQRDYELGTLAISQGPYARDIQQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYD 222

[Close]

BLAST of mRNA_L-digitata_M_contig102258.1.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.600e-32
Identity = 68/162 (41.98%), Postives = 97/162 (59.88%), Query Frame = 1

Query:    1 SPTNWWNTIDQRLVNVGFNSPNLDLCVYTYSERGAIYILTLYIDDVLLLGKYVLVLSRVKQKLMSRFSMADMGDVSLVLGTSATRDRGKETVTITQGRYTKSLLERYCVASCNSTYTPAVGKELSLGQPEEMLLSKEEKQRFQAIIGSAMYLGHATRYDIIH 486
            SP+ W + I+ RL+  G+     D CVY +     + IL +Y+DD+L+ G    ++SR K++LM  F M DMG+V  V+G    RD    T+ I+QG Y + +L+RY +   N   TP  G ELS  QP++ LL  E+KQRFQAI GS +YL   TRYD+ +
Sbjct:  375 SPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSY 536

[Close]

BLAST of mRNA_L-digitata_M_contig102258.1.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 9.200e-32
Identity = 67/162 (41.36%), Postives = 96/162 (59.26%), Query Frame = 1

Query:    1 SPTNWWNTIDQRLVNVGFNSPNLDLCVYTYSERGAIYILTLYIDDVLLLGKYVLVLSRVKQKLMSRFSMADMGDVSLVLGTSATRDRGKETVTITQGRYTKSLLERYCVASCNSTYTPAVGKELSLGQPEEMLLSKEEKQRFQAIIGSAMYLGHATRYDIIH 486
            SP+ W + I+ RL+  G+     D CVY +     + IL +Y+DD+L+ G    ++S  K++LM  F M DMG+V  V+G    RD    T+ I+QG Y + +L+RY +   N   TP  G ELS  QP++ LL  E+KQRFQAI GS +YL   TRYD+ +
Sbjct: 1154 SPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSY 1315

[Close]

BLAST of mRNA_L-digitata_M_contig102258.1.1 vs. uniprot
Match: A0A6H5L4B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4B4_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.280e-31
Identity = 66/162 (40.74%), Postives = 97/162 (59.88%), Query Frame = 1

Query:    1 SPTNWWNTIDQRLVNVGFNSPNLDLCVYTYSERGAIYILTLYIDDVLLLGKYVLVLSRVKQKLMSRFSMADMGDVSLVLGTSATRDRGKETVTITQGRYTKSLLERYCVASCNSTYTPAVGKELSLGQPEEMLLSKEEKQRFQAIIGSAMYLGHATRYDIIH 486
            +P+ W + I+ RL   G+   + D CVY +     + IL +Y+DD+L+ G    ++SR K++LM  F M +MG+V  V+G    RD    T+ I+QG Y + +L+RY +   N   TP  G ELS  QP++ LL  E+KQRFQAI GS +YL   TRYD+ +
Sbjct: 1067 APSLWNDAINDRLTIFGWQRTHCDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTEMGEVMRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSY 1228

[Close]

BLAST of mRNA_L-digitata_M_contig102258.1.1 vs. uniprot
Match: A0A6H5JN29_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN29_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 7.750e-31
Identity = 64/154 (41.56%), Postives = 92/154 (59.74%), Query Frame = 1

Query:   25 IDQRLVNVGFNSPNLDLCVYTYSERGAIYILTLYIDDVLLLGKYVLVLSRVKQKLMSRFSMADMGDVSLVLGTSATRDRGKETVTITQGRYTKSLLERYCVASCNSTYTPAVGKELSLGQPEEMLLSKEEKQRFQAIIGSAMYLGHATRYDIIH 486
            I+ RL+  G+   + D CVY +     + IL +Y+DD+L+ G    ++SR K+ LM  F M DMG+V LV+G    RD    T+ I+QG Y + +L+RY +   N   TP  G ELS  QP++ LL  E+KQRFQ I GS +YL   +RYD+ +
Sbjct:  176 INNRLIIFGWQRTHSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKDLMDSFDMIDMGEVKLVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQTITGSLLYLAQCSRYDLSY 329

[Close]

BLAST of mRNA_L-digitata_M_contig102258.1.1 vs. uniprot
Match: A0A6H5L0J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J0_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.360e-30
Identity = 65/151 (43.05%), Postives = 92/151 (60.93%), Query Frame = 1

Query:   34 RLVNVGFNSPNLDLCVYTYSERGAIYILTLYIDDVLLLGKYVLVLSRVKQKLMSRFSMADMGDVSLVLGTSATRDRGKETVTITQGRYTKSLLERYCVASCNSTYTPAVGKELSLGQPEEMLLSKEEKQRFQAIIGSAMYLGHATRYDIIH 486
            RL+  G+   + D CVY +  R  + IL +Y+DD+L+ G    ++SR K++LM  F M DMG+V  V+G    RD    T+ I+QG Y + +L+RY +   N   TP  G ELS  QP++ LL  E+KQRFQAI GS +YL   TRYD+ +
Sbjct:  631 RLIIFGWQRTHSDPCVYIFVSRDELTILAIYVDDMLITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSY 781

[Close]

BLAST of mRNA_L-digitata_M_contig102258.1.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 9.840e-29
Identity = 65/150 (43.33%), Postives = 91/150 (60.67%), Query Frame = 1

Query:   13 WWNTIDQRLVNVGFNSPNLDLCVYTYSERGAIYILTLYIDDVLLLGKYVLVLSRVKQKLMSRFSMADMGDVSLVLGTSATRDRGKETVTITQGRYTKSLLERYCVASCNSTYTPAVGKELSLGQPEEMLLSKEEKQRFQAIIGSAMYLGH 462
            W  TID +L+ +G N    D CVY Y     I I+TLY+DD++++G  + V+  +K KLM +F M+ +G+VSLVLG   TRD    T+TITQ  YT+S+L R+ +  C  T  P+VG ELS  QP E +L+KE+ Q   A + S     H
Sbjct:  204 WEKTIDLKLIELGCNPLKSDSCVYIYKRNHTIVIITLYVDDLVVIGGNIEVIEAIKTKLMEQFQMSVLGNVSLVLGMQVTRDGEHGTLTITQADYTRSILARFGMEECKPTSIPSVGSELSTEQPTETVLNKEKTQSQLARVMSKAAKAH 353

[Close]

BLAST of mRNA_L-digitata_M_contig102258.1.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.260e-21
Identity = 60/162 (37.04%), Postives = 79/162 (48.77%), Query Frame = 1

Query:    1 SPTNWWNTIDQRLVNVGFNSPNLDLCVYTYSERGAIYILTLYIDDVLLLGKYVLVLSRVKQKLMSRFSMADMGDVSLVLGTSATRDRGKETVTITQGRYTKSLLERYCVASCNSTYTPAVGKELSLGQPEEMLLSKEEKQRFQAIIGSAMYLGHATRYDIIH 486
            SP +W  TID  LV +GF     D CVY Y     + +LTLY+DD+L                             ++ G +  +           G YT S+L+R+ + SC    T   G ELS+ QPEE LL+ E KQR+QAIIGS MYL   TRYDI++
Sbjct:  457 SPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLL-----------------------------IIRGGAHHQP----------GNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMY 579

[Close]

BLAST of mRNA_L-digitata_M_contig102258.1.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.240e-19
Identity = 46/99 (46.46%), Postives = 59/99 (59.60%), Query Frame = 1

Query:  190 MSRFSMADMGDVSLVLGTSATRDRGKETVTITQGRYTKSLLERYCVASCNSTYTPAVGKELSLGQPEEMLLSKEEKQRFQAIIGSAMYLGHATRYDIIH 486
            M  F M DMG+V  V+G    RD    T+ I+QG Y + +L+RY +   N   TP  G ELS  QP++ LL  EEKQRFQ I GS +YL   TRYD+ +
Sbjct:    1 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSY 99

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig102258.1.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig102258.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KCG4_9PHAE	2.710e-34	41.36	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JW03_9PHAE	4.650e-33	42.14	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JF46_9PHAE	1.600e-32	41.98	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KHG5_9PHAE	9.200e-32	41.36	Uncharacterized protein n=11 Tax=Ectocarpus sp. CC...	[more]
A0A6H5L4B4_9PHAE	2.280e-31	40.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN29_9PHAE	7.750e-31	41.56	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L0J0_9PHAE	1.360e-30	43.05	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J6N1_9PHAE	9.840e-29	43.33	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5L6R7_9PHAE	1.260e-21	37.04	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KC04_9PHAE	2.240e-19	46.46	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig102258	contig	L-digitata_M_contig102258:296..890 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	1108849.XP_002562561.1
PFAMs	DUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size	595
Max annot lvl	4751\|Fungi
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.67e-08
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3NUZ7@4751\|Fungi,3QNZW@4890\|Ascomycota,20FR9@147545\|Eurotiomycetes,3SBVI@5042\|Eurotiales
Description	Encoded by
Cds size	327
COG category	L

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406627.7941217-UTR-L-digitata_M_contig102258:295..374	1682406627.7941217-UTR-L-digitata_M_contig102258:295..374	Laminaria digitata LdigPH10_18mv male	UTR	L-digitata_M_contig102258 296..374 -
1682406627.8132446-UTR-L-digitata_M_contig102258:701..890	1682406627.8132446-UTR-L-digitata_M_contig102258:701..890	Laminaria digitata LdigPH10_18mv male	UTR	L-digitata_M_contig102258 702..890 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406627.8045642-CDS-L-digitata_M_contig102258:374..701	1682406627.8045642-CDS-L-digitata_M_contig102258:374..701	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig102258 375..701 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig102258.1.1	prot_L-digitata_M_contig102258.1.1	Laminaria digitata LdigPH10_18mv male	polypeptide	L-digitata_M_contig102258 375..701 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-digitata_M_contig102258:296..890-
coding sequence from alignment at L-digitata_M_contig102258:296..890-

protein sequence of mRNA_L-digitata_M_contig102258.1.1

>prot_L-digitata_M_contig102258.1.1 ID=prot_L-digitata_M_contig102258.1.1|Name=mRNA_L-digitata_M_contig102258.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=109bp
MSRFSMADMGDVSLVLGTSATRDRGKETVTITQGRYTKSLLERYCVASCN
STYTPAVGKELSLGQPEEMLLSKEEKQRFQAIIGSAMYLGHATRYDIIHR
QPTGEGDV*

mRNA from alignment at L-digitata_M_contig102258:296..890-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-digitata_M_contig102258.1.1 ID=mRNA_L-digitata_M_contig102258.1.1|Name=mRNA_L-digitata_M_contig102258.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=595bp|location=Sequence derived from alignment at L-digitata_M_contig102258:296..890- (Laminaria digitata LdigPH10_18mv male)
AGCCCAACGAACTGGTGGAACACGATTGACCAACGTCTGGTAAACGTTGG
CTTCAACAGTCCCAATTTGGATCTGTGCGTCTACACCTACTCGGAGAGAG
GCGCTATATACATCCTGACCCTGTATATCGACGACGTCCTCTTGCTAGGA
AAATACGTCCTGGTGCTGAGCCGGGTCAAGCAGAAGCTGATGAGTCGTTT
CTCAATGGCCGACATGGGAGACGTGTCACTCGTGCTCGGGACGAGTGCTA
CTCGTGACCGCGGGAAGGAGACGGTGACCATCACTCAGGGGAGATATACG
AAGTCCCTGCTGGAGCGGTACTGTGTGGCAAGCTGCAATTCTACGTACAC
GCCTGCTGTGGGAAAAGAGCTATCGCTGGGTCAGCCGGAGGAGATGTTAC
TAAGCAAGGAGGAGAAACAGCGTTTCCAGGCCATCATAGGCAGCGCAATG
TACCTTGGACATGCGACTCGCTATGACATTATACACCGCCAGCCTACTGG
CGAGGGCGATGTCTAAACCATCCAAAGCTCACGTGGCGGCAGCCAAACAT
CTACTTTGCTGTCTGGCCGGGACCGTGGATATTGCCATTACGTAT

Coding sequence (CDS) from alignment at L-digitata_M_contig102258:296..890-

>mRNA_L-digitata_M_contig102258.1.1 ID=mRNA_L-digitata_M_contig102258.1.1|Name=mRNA_L-digitata_M_contig102258.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=327bp|location=Sequence derived from alignment at L-digitata_M_contig102258:296..890- (Laminaria digitata LdigPH10_18mv male)
ATGAGTCGTTTCTCAATGGCCGACATGGGAGACGTGTCACTCGTGCTCGG
GACGAGTGCTACTCGTGACCGCGGGAAGGAGACGGTGACCATCACTCAGG
GGAGATATACGAAGTCCCTGCTGGAGCGGTACTGTGTGGCAAGCTGCAAT
TCTACGTACACGCCTGCTGTGGGAAAAGAGCTATCGCTGGGTCAGCCGGA
GGAGATGTTACTAAGCAAGGAGGAGAAACAGCGTTTCCAGGCCATCATAG
GCAGCGCAATGTACCTTGGACATGCGACTCGCTATGACATTATACACCGC
CAGCCTACTGGCGAGGGCGATGTCTAA