mRNA_L-digitata_M_contig10222.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10222.1.1
Unique NamemRNA_L-digitata_M_contig10222.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10222.1.1 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 1.320e-51
Identity = 91/129 (70.54%), Postives = 104/129 (80.62%), Query Frame = 1 
Query:    7 MAPSRPTSS---LRPWARLGAFAGLVLALQRPPACAALEILESVVDRDGDVLIVEDILEGFGRVPVSVDFSAVSDHMFIGFKAGAVRIYPDGGGTEMAAVYDTCVDMEDDVYDNNDLGLLNFRLHPDWP 384
            M  S PT++   L PWA   A AGL L  +  P+CA LE+LE+VVDRDGDVL+VEDILEGFGRVPVSV FS  + HMFIGFKAG VRIYPDGG T +AA+YD CVDMED+VY+NNDLGLLNF+LHPDWP
Sbjct:    1 MTLSSPTTTGLRLPPWACCLALAGLSLLTRNIPSCAGLEVLETVVDRDGDVLVVEDILEGFGRVPVSVAFSPTTTHMFIGFKAGGVRIYPDGGDTLVAAIYDDCVDMEDEVYENNDLGLLNFQLHPDWP 129
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10222.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LB76_9PHAE1.320e-5170.54PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10222contigL-digitata_M_contig10222:1070..6458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size384
Hectar predicted targeting categorysignal peptide
Exons2
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406627.3886557-UTR-L-digitata_M_contig10222:1069..10751682406627.3886557-UTR-L-digitata_M_contig10222:1069..1075Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10222 1070..1075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406627.397348-CDS-L-digitata_M_contig10222:1075..13961682406627.397348-CDS-L-digitata_M_contig10222:1075..1396Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10222 1076..1396 +
1682406627.4059627-CDS-L-digitata_M_contig10222:6401..64581682406627.4059627-CDS-L-digitata_M_contig10222:6401..6458Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10222 6402..6458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10222.1.1prot_L-digitata_M_contig10222.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10222 1076..6458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10222.1.1

>prot_L-digitata_M_contig10222.1.1 ID=prot_L-digitata_M_contig10222.1.1|Name=mRNA_L-digitata_M_contig10222.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=126bp
MAPSRPTSSLRPWARLGAFAGLVLALQRPPACAALEILESVVDRDGDVLI
VEDILEGFGRVPVSVDFSAVSDHMFIGFKAGAVRIYPDGGGTEMAAVYDT
CVDMEDDVYDNNDLGLLNFRLHPDWP
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mRNA from alignment at L-digitata_M_contig10222:1070..6458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10222.1.1 ID=mRNA_L-digitata_M_contig10222.1.1|Name=mRNA_L-digitata_M_contig10222.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=5389bp|location=Sequence derived from alignment at L-digitata_M_contig10222:1070..6458+ (Laminaria digitata LdigPH10_18mv male)
GCGACGATGGCCCCGTCTCGACCGACGAGCAGCCTCCGCCCATGGGCGCG
CTTGGGCGCCTTTGCGGGGCTTGTACTGGCCTTGCAGAGACCACCAGCCT
GCGCTGCACTGGAGATACTGGAGAGCGTAGTTGACCGGGATGGGGACGTG
CTCATCGTGGAGGATATTTTGGAGGGATTCGGCAGGGTACCCGTTTCTGT
GGACTTTTCAGCGGTGTCGGACCACATGTTTATCGGCTTCAAAGCAGGGG
CGGTGCGAATCTACCCTGACGGTGGAGGGACGGAGATGGCGGCAGTGTAC
GATACCTGCGTGGACATGGAGGATGATGTGAGAGAGTTTCTACAGTAGGG
TGTTCCTTGCCTCGTTCGCTCTTGATGAGTCCGTCCACCTGTAACGAATA
TTTCAGGATTTATTAACGCATAGCAGGTATCTCAGTTTGCGGTTCGAATA
CCTGGTACCTGCCCTGGTCGTTTTTTTGCCGATTTTTCTGTTGTCCATAT
TTGCCCGTGTTGAGTGCCTCTCACATCCCGGGTGCGGCGAGTGCTTGTGA
CTTGACTTATTGCGTGATGGCCTGCCAGCGTGAGGGGCTTGTCAGCCTAC
TGCTATGGGTGTGCATGGGAAGTGATAGTGCTGGGTGCTTGGATGCTTTT
GAACAGCAGCAGCAGCAAGGGTATATGCCATCGCAAGAGAGAACAACTTT
CTACGAATGTTAATGTTTGGCCTACCGTACGCAAATCTTGACTAATCTTG
ATGCCACTTTCGGAAGCGGCGTTGCCGTCATGCCGTTTTTCAGCACAGCA
GCGGTAGCAGCTCCAGCAAGAGTGCTCGAATACATACTTGAAAAGTATAG
CATTACGAGTATGGGGCAGACAGTAGTATCGCCATCACAGCCCTCCCTTT
GCACCAGCCGTTTCGCTTACTGTAGACGCATCTGCTCGCCTGACGCGGCC
CTGACTCGCGACGCGTTTGTACGTATCGTCATATCATGCATTAGGTGCCT
TTCGTACGCTGCCATGCTACAACTACAGCAGCGTCCTGATCCTTCTCTCT
TGCCCAGCCCGCAGCGAGAAAATCAAAGAATAGCCGCTTCGGGAGTAGGT
CCGCTGAATTTCGATAAGGAAAAGTCGGAGCCTGCAACGTACAGCAGCTA
TCAGCATCGTATCTATAGGTGCCGACCTCGTACACGGTACTTGCAAGTCG
ACCTAGCTCTGACTTGTGTTTGACTTGTCTGCTGTGCTTCTGTGTTGACT
CCGCCCACGCCTCTGTATACTCGTACGACGTACGTATGATACGAGTGCAA
TTACATGTATGTACGTACGGTTTCAAAATATGTCAAAAGCATCACGGTCG
TGTTTCAACTTTCACTTTTGCGTTTTGCACACGGCACGGTGGTACTCGAA
AGTCGACGCAGCTCTGACTTGTGTTTGACTTGTTGTCTTCTGTGTTTCTG
TCCCGACGCCGCCCACGCCTCTGTATTATACGTATGATCGAGTGCAAGAT
TACGAGACTAAGACTAAGCAGTACAAGCTATCTACGTACGGTCTGATACG
GTATCAAAAATATGTCAAGCATCACCATGTTTCAACTTTCTTGCAAGTTG
CACAGCCAGCAGCGGTACTGCTGTGGTATCATACGCTCAGACCCTCTCGG
ACTGCCGCTGTCTCACGCGCCCTGTGTTCTCATGTGCTGTGCTGGACGAC
GCGACAACAGCATCATAACTATTATTAATAATAGTAGCGTGAATAGTAGC
GCGTCACCCGCCTGCCATATCAGCCACCAGCTGCACTTCGAGCAGTATTA
TTTTAATACTCGTAGTGTTCTATTCCAATTGTATTGCTCCCAGCAGGGGA
AAATAAAGGTTGCCCTGATGACTGATGACGGCCCTGTTTATTGACAGTTG
AGCACAGCAAAAAGCACGTACCTGGTGGAGGATAAAACGTGATTCTCGTA
CGTACTCGTACAGGAAGAGGGGTTTGTGGTGTGGGAGGGTGGGACGGACG
GAATATTGCGGCATGACGACAATCGATGCAATCACAAGCAAATAGGCAGG
CGACGGATGCCTCACAATCTTTTTGTCGTTCAGTCTGGCTGCTGGCTGCT
GGCCCTTGTCGGGTCGTTTATTAGTTATTAGGCGAAGGTGGGTCGTTTTC
GGGCAAAGAATGAAGAATAAGAATCCAAAAACCGGTCACGGCCACGACGT
AACCGTTACCCTTTGGCTCTTGGGCCCCAAGTTAACGTCCTCATGAAACA
AAACATACATACTCGTACTCGTACGATACCAGTGACAAGTGCGGTGATGG
CGGGAGCACGACGATCATTATAATTACCTATATTAGCATTGACGTGCTCG
CGTTTCGTTGAGCGCCGGGGTATCTTACCAACTGATTAATCAAGGAGACC
AGTCTCAAGTCTTTGCTGAGCCATCTAGGCTCTAGGCTACGGCTGTTATC
GTATACATACCGGGTACCTGCTACCAGGTACCTGGTACCTGGGAGGTTTA
TGTTTTTGTTGTTTTTTTCCCATCCCGTTTATTATCTTGGCACTTGTGTC
TCTCTCCCTCCATAGTAGTAACTCAGATCCGGGGTCAAAAAGCAGGCTTT
TCTCCCCCCCCCCCACTACGTTTATGCTGTGAAGCTGTTTTGACAACATT
GAAAACGACTATAAATATGTACTTCGAAGTAGACGTACTGTACGAAGGAG
AACTTGCACGGAGCAGAAACCCGCCACCCTACGTTGTTGTTTGCGCTATC
ATACATACCTTTCATACCGGTTAGACTGCCAGTACAAGTACGAAATACCG
AAGACGTTCGGGTTCCAACGTTCCAACCAGTTTGGCACGTGCAGCCACCA
AGCCACCAACCCAACGCCAGATGACAGCAAACCGATTTTCCTGGCACGCC
TTTCCTACGCACGCACACCCACCAACGCCGGATCACAGCAACATAACTTT
CCCTGACCATCCTTTCCAATGCGCACCCACCAACGCCGGATGACAGCAAA
GCAATTTTCAATTTTCCTGCCATGCCTTTCCAACGTACATCCCACCAACG
CCTGATGGCAGCAAAGCATTTGCCTGTGGCCCACCTTGTCTTCTGTGCTA
CTGCTGTGCTACCGCACATAAGTTCGTCTCGATCGTACTGTAAGTTGTTC
GTCCACAAAAGTCTAACATGGGAGGATAAGACCATTTTGCTATTTCCCAG
TGTTGTAGCTTGTAGTCCGCATGCATGTTACGTGGAAACCCCATCGAAGA
AATAGTGGAACCAAAGACTAACAAAACACTACTGCTGCAGTTGCTGCTGT
AGTCTAATGTCGTTCGTGTTGACTCTGACTATATCAGGAACCTCGGTAAG
ATCCGAGCATTCAATTTTTCAATTTTTCCAGCCGATTTTTTTTCGGTTTT
GGAGTCGGTTTGCGTTGATCGCATTGCTCTTATTTTTACCGGGGCGTTTT
TTTAGGAGGGGATTTTATTGATTGTTGGACATGGGAAATCCCCACGGCTG
GGCCTTGGTCCGGTATGCACTGCCGGTACCCGGTACTACGAGTATACTGG
TTGAGGCGGCTGCCAGGGCGGCCGGAGTGTATTTACTACATATGTTCCTT
TTCACAATAACGCCTCATAATATAGTGGAAACCCATCAAAATGCCCGGCG
CCGAGATGAAGGCACGTGCAACAGAAGAGAGAGGACGGAGGGAGAGTGGG
AGACTTAGCACGATGGACGAAGCCGCTGATGGCTTGGGCTCTGTGGATCC
TCCTGTACCATCATAGCATCATGCATTTGGTGCGCTTTTTCTCGTTTTTC
AACCTACCACTCTTTTGCCTTTGAAAACACGGCCCGCCCAAAATCAACGT
CTTTTCTAGCTCTAGTGAAGCCAAATCGCGCAAGATCGTGCCTTCGGCAG
GGCGCCTCCAGCGGGGCCCTCCGGGAGCGCCTCCGGCGGGACCCCCTCAC
TAGCCGGGGGGGGCGGGGCTCGCGCCTTTGCCGCGAAGCCAGTGCGCTGT
TCGGTTCCAGTGTAGCATCTGACGCAGCCAGTACATACCGTGCTGGCTGG
AGCTGCCAGGGCCCAGCCCTAGAAATTCCCGCTTTTTCTTTATTTCAACG
AAGTGACGGCGAGAATCGAACCAGTAACCTGCCTGTTGAAAACACCTTGT
CCTCCCGACGACGCCAATATATTAGAAACGGAAGTTGCGCAACTAACGCT
TCTGTGGAAGTAAGCCTTCTGAACCTGGCTCCACCACATGTTTCTGTTTA
GTCTTCATCCGTGCACGCCTTTAGTTTTGAGCGTTACACCAGTACTGTAG
TTTTCCAAGCCCAGTGGTTTGCTGCTGCTCTTAATGCTGAGTACACTATC
TAAACGACAAGCCTTGCCTCATACCAGTAATAAATAACCGGCCTGCGTAG
ACCACCTGGGCATTGTTTTGCATTTCTGTAGCCACGCTACACGCTGCGAG
GGCAAGAACAGTGCATCCAGGACTGGTGCTGTCCTTCATCCCAGACTATT
AGATCTATTAATAATAGACTACAATACGAGTATCATATACGACTGTCTTT
GCTCACAGCGCGGTCAAGATCGAAATCTACCGTAGTAATAGCGCCTTGTC
GCCAAAGCGAGCCCCCAAAATACTCTTGTGACAACACTTTGCGGCGGCGA
CTGATGTTATACTTGTTTTAATAAAAATACGTAAACGCACGCCAACACTC
GACTCCCGCACAGTGTCTTGTCGCAAAATCGAGCCACGAAAACACTGCTT
TGGCATATCATATCACGCACCAACACCCGACTCCCGCAAAGCGCCTTCTC
GCCAAAGCTAGCCACCCAAACACTGCTAGCACGCACCAACACCTGACTCC
CGCAAAGTGCCTGCCTTCCCGCCAAAGCGAGCCACCAAAAACACTGCTGC
TACAAGCACGCACCAGCATCTGACTCCCGAAAAGCGTCTACTCTCCAAGG
CAAGCCACCAAGACACTACTACTCCCTGCTGTGTGCGACATTGCACGCAC
CAAAACGACTCGCGCAAAGTGCGTTATCGACAGACCGAGCCAGCATTTTT
TCGTTCGATGTGTTCAGTCTTAGAATTTGTCCTTGTATCACATGTATTAA
TAGTGCATTAGCTTGCTGTTGTAGCCGGTAAACCTGTACCATGATTCTCG
GTTCTTTTTCTTCTGCTGGTAAAGTATGAATATGTGCTATTTGACGTTAT
CGCACGGTCTTCCTATTGATATATTCATTATACCAAAATTGATGTACTCA
AGTACTAATGCACTGACTGATGCTTTGCTGTGCCACTGCTGCCGTATTCC
CAATTGCATTCCCAATTGCCAAATGTCAACAGGTTTACGACAACAACGAC
CTGGGGCTCCTGAACTTCCGATTACATCCTGACTGGCCG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10222:1070..6458+

>mRNA_L-digitata_M_contig10222.1.1 ID=mRNA_L-digitata_M_contig10222.1.1|Name=mRNA_L-digitata_M_contig10222.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=378bp|location=Sequence derived from alignment at L-digitata_M_contig10222:1070..6458+ (Laminaria digitata LdigPH10_18mv male)
ATGGCCCCGTCTCGACCGACGAGCAGCCTCCGCCCATGGGCGCGCTTGGG
CGCCTTTGCGGGGCTTGTACTGGCCTTGCAGAGACCACCAGCCTGCGCTG
CACTGGAGATACTGGAGAGCGTAGTTGACCGGGATGGGGACGTGCTCATC
GTGGAGGATATTTTGGAGGGATTCGGCAGGGTACCCGTTTCTGTGGACTT
TTCAGCGGTGTCGGACCACATGTTTATCGGCTTCAAAGCAGGGGCGGTGC
GAATCTACCCTGACGGTGGAGGGACGGAGATGGCGGCAGTGTACGATACC
TGCGTGGACATGGAGGATGATGTTTACGACAACAACGACCTGGGGCTCCT
GAACTTCCGATTACATCCTGACTGGCCG
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