mRNA_L-digitata_M_contig102215.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102215.2.1
Unique NamemRNA_L-digitata_M_contig102215.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig102215.2.1 vs. uniprot
Match: A0A7V6YBC9_9PROT (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7V6YBC9_9PROT)

HSP 1 Score: 170 bits (430), Expect = 2.280e-51
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 PLGTQVPGLAKATLSSGANVVSGNAYVPIDADMVDMETYAVKRACDRFKLPLVALRGISDGAVELRHIDDWTQYLHVIDEKLAAAVDLLEAAIANGTLEWPALDQD 318
            PLG  VPGL +ATLS+GANVVSG  Y  I ADMVDMETYA+KRA D F+LPLVALRGISDG  ELRHIDDWT+YLH+ID KLA AVDLLEAAIANGTLEWP+LD D
Sbjct:  113 PLGPLVPGLRRATLSTGANVVSGEQYRAIAADMVDMETYAIKRATDHFRLPLVALRGISDGDEELRHIDDWTRYLHIIDHKLAGAVDLLEAAIANGTLEWPSLDPD 218
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BLAST of mRNA_L-digitata_M_contig102215.2.1 vs. uniprot
Match: A0A0Q7DVE5_9HYPH (5'-methylthioadenosine nucleosidase n=5 Tax=Hyphomicrobiales TaxID=356 RepID=A0A0Q7DVE5_9HYPH)

HSP 1 Score: 154 bits (390), Expect = 2.020e-45
Identity = 78/99 (78.79%), Postives = 86/99 (86.87%), Query Frame = 1 
Query:    1 PLGTQVPGLAKATLSSGANVVSGNAYVPIDADMVDMETYAVKRACDRFKLPLVALRGISDGAVELRHIDDWTQYLHVIDEKLAAAVDLLEAAIANGTLE 297
            PLG  VPG+AKATLS+GANVVSG AY  I ADMVDMETYAV RAC RFK+PL+ALRGISDG  EL H+DDWT+YLHV+DEKLA AVDLLEAAIA+G LE
Sbjct:  113 PLGPFVPGIAKATLSTGANVVSGAAYQGIGADMVDMETYAVLRACQRFKVPLIALRGISDGNEELGHLDDWTRYLHVVDEKLAHAVDLLEAAIASGALE 211
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BLAST of mRNA_L-digitata_M_contig102215.2.1 vs. uniprot
Match: UPI0006D762F2 (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Devosia sp. A16 TaxID=1736675 RepID=UPI0006D762F2)

HSP 1 Score: 150 bits (378), Expect = 1.330e-43
Identity = 75/99 (75.76%), Postives = 85/99 (85.86%), Query Frame = 1 
Query:    1 PLGTQVPGLAKATLSSGANVVSGNAYVPIDADMVDMETYAVKRACDRFKLPLVALRGISDGAVELRHIDDWTQYLHVIDEKLAAAVDLLEAAIANGTLE 297
            PLG  VP +AKATLS+GANVVSG AY  I+ADMVDMETYAV RAC RF LPL+ALRGISDG  EL H+DDWT+YLH++DEKLA AVDLLEAA++ GTLE
Sbjct:  113 PLGPFVPDIAKATLSTGANVVSGKAYDRINADMVDMETYAVLRACQRFGLPLIALRGISDGDEELGHLDDWTRYLHIVDEKLAHAVDLLEAALSAGTLE 211
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BLAST of mRNA_L-digitata_M_contig102215.2.1 vs. uniprot
Match: UPI001BB053A9 (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Devosia sp. BSSL-BM10 TaxID=2829817 RepID=UPI001BB053A9)

HSP 1 Score: 144 bits (364), Expect = 1.170e-41
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 PLGTQVPGLAKATLSSGANVVSGNAYVPIDADMVDMETYAVKRACDRFKLPLVALRGISDGAVELRHIDDWTQYLHVIDEKLAAAVDLLEAAIANGTL 294
            PL  ++ GL  ATLS+GAN+VSG AYV +DADMVDMETYAV RAC  F +PLVALRGISDGA EL H+DDWTQYLH+IDEKLAAAVDL+E  +A G +
Sbjct:  100 PLSPRIAGLDGATLSTGANIVSGAAYVGVDADMVDMETYAVLRACQAFGVPLVALRGISDGAAELAHVDDWTQYLHIIDEKLAAAVDLIEVEMATGRI 197
[Close]
BLAST of mRNA_L-digitata_M_contig102215.2.1 vs. uniprot
Match: UPI001CD099AE (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Devosia sp. CJK-A8-3 TaxID=2866214 RepID=UPI001CD099AE)

HSP 1 Score: 143 bits (360), Expect = 4.860e-41
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:    1 PLGTQVPGLAKATLSSGANVVSGNAYVPIDADMVDMETYAVKRACDRFKLPLVALRGISDGAVELRHIDDWTQYLHVIDEKLAAAVDLLEAAIANGTL 294
            PL   VPG+AKA LS+GA++VSG AY  IDADMVDMETYAV RAC  F +PL+ALRGISDGA EL H+ DWTQYLHVIDE+LAAAVD +EAA++ GTL
Sbjct:  100 PLPLSVPGIAKARLSTGADIVSGAAYDAIDADMVDMETYAVLRACQVFDVPLIALRGISDGAQELSHVTDWTQYLHVIDERLAAAVDQIEAAVSAGTL 197
[Close]
BLAST of mRNA_L-digitata_M_contig102215.2.1 vs. uniprot
Match: UPI001F0576B3 (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Devosia sp. JXJ CY 41 TaxID=2917991 RepID=UPI001F0576B3)

HSP 1 Score: 140 bits (354), Expect = 3.720e-40
Identity = 70/95 (73.68%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:   10 TQVPGLAKATLSSGANVVSGNAYVPIDADMVDMETYAVKRACDRFKLPLVALRGISDGAVELRHIDDWTQYLHVIDEKLAAAVDLLEAAIANGTL 294
            T + GL  ATLS+GAN+VSG AY  I ADMVDMETYAV RAC  F +PL+ALRGISDGA EL H+DDWTQYLH+IDEKLAAAVDL+EAA+A G L
Sbjct:  102 TTIAGLPTATLSTGANIVSGRAYDGIAADMVDMETYAVLRACQAFGVPLLALRGISDGASELGHVDDWTQYLHIIDEKLAAAVDLVEAAVAEGRL 196
[Close]
BLAST of mRNA_L-digitata_M_contig102215.2.1 vs. uniprot
Match: UPI0010BFA147 (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Rhizobium sp. FY34 TaxID=2562309 RepID=UPI0010BFA147)

HSP 1 Score: 140 bits (354), Expect = 5.860e-40
Identity = 69/98 (70.41%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 PLGTQVPGLAKATLSSGANVVSGNAYVPIDADMVDMETYAVKRACDRFKLPLVALRGISDGAVELRHIDDWTQYLHVIDEKLAAAVDLLEAAIANGTL 294
            PL   +PGL  A LS+G N+VSG AY  IDADMVDMET+AV RAC RF +PL+ALRGISDG  ELRH+DDWTQYLHVIDEKLA AVDLL  A+ +G L
Sbjct:  113 PLPHGIPGLQSARLSTGGNIVSGQAYDGIDADMVDMETFAVLRACQRFAVPLIALRGISDGKAELRHVDDWTQYLHVIDEKLAQAVDLLSQALKSGDL 210
[Close]
BLAST of mRNA_L-digitata_M_contig102215.2.1 vs. uniprot
Match: UPI001F3E2C39 (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Devosia sp. SL43 TaxID=2806348 RepID=UPI001F3E2C39)

HSP 1 Score: 140 bits (352), Expect = 7.690e-40
Identity = 70/98 (71.43%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    1 PLGTQVPGLAKATLSSGANVVSGNAYVPIDADMVDMETYAVKRACDRFKLPLVALRGISDGAVELRHIDDWTQYLHVIDEKLAAAVDLLEAAIANGTL 294
            PL   +PGLA ATLS+GAN+VSG AY  I+ADMVDMETYAV RAC  F +PL+ALRGISDGA EL H+ DWTQYLH+IDEKLAAAVDL+EA +  G L
Sbjct:  100 PLRPLLPGLAGATLSTGANIVSGPAYDDIEADMVDMETYAVLRACQAFGVPLLALRGISDGAAELGHVSDWTQYLHIIDEKLAAAVDLVEAEVKAGRL 197
[Close]
BLAST of mRNA_L-digitata_M_contig102215.2.1 vs. uniprot
Match: A0A1X7NQY7_9HYPH (Adenosylhomocysteine nucleosidase n=1 Tax=Mesorhizobium australicum TaxID=536018 RepID=A0A1X7NQY7_9HYPH)

HSP 1 Score: 140 bits (353), Expect = 9.280e-40
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 PLGTQVPGLAKATLSSGANVVSGNAYVPIDADMVDMETYAVKRACDRFKLPLVALRGISDGAVELRHIDDWTQYLHVIDEKLAAAVDLLEAAIANGTL 294
            PL  ++PG+A ATLS+GAN+VSG AY  I ADMVDMET+AV RAC RF +PLVALRGISDGA +LRH+ DWT+YLHVIDEKLAAAVD L  AIA G L
Sbjct:  113 PLPLRIPGIAGATLSTGANIVSGAAYDGIGADMVDMETFAVLRACHRFGVPLVALRGISDGAADLRHVGDWTEYLHVIDEKLAAAVDRLAEAIAAGLL 210
[Close]
BLAST of mRNA_L-digitata_M_contig102215.2.1 vs. uniprot
Match: A0A1L3SV85_9HYPH (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Aquibium oceanicum TaxID=1670800 RepID=A0A1L3SV85_9HYPH)

HSP 1 Score: 140 bits (352), Expect = 1.240e-39
Identity = 67/98 (68.37%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 PLGTQVPGLAKATLSSGANVVSGNAYVPIDADMVDMETYAVKRACDRFKLPLVALRGISDGAVELRHIDDWTQYLHVIDEKLAAAVDLLEAAIANGTL 294
            PL  ++PG+ +ATLS+GANVVSG AY  I ADMVDMET+AV RAC +F +PL+ALRGISDGA ELRH+ DWT+YLHVIDE +A AVD LEAA+A G +
Sbjct:  116 PLPLRIPGIREATLSTGANVVSGPAYDAIQADMVDMETFAVLRACQKFDVPLIALRGISDGAAELRHVGDWTEYLHVIDENMAQAVDRLEAALAEGRI 213
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102215.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V6YBC9_9PROT2.280e-5179.255'-methylthioadenosine/S-adenosylhomocysteine nucl... [more]
A0A0Q7DVE5_9HYPH2.020e-4578.795'-methylthioadenosine nucleosidase n=5 Tax=Hyphom... [more]
UPI0006D762F21.330e-4375.765'-methylthioadenosine/S-adenosylhomocysteine nucl... [more]
UPI001BB053A91.170e-4171.435'-methylthioadenosine/S-adenosylhomocysteine nucl... [more]
UPI001CD099AE4.860e-4172.455'-methylthioadenosine/S-adenosylhomocysteine nucl... [more]
UPI001F0576B33.720e-4073.685'-methylthioadenosine/S-adenosylhomocysteine nucl... [more]
UPI0010BFA1475.860e-4070.415'-methylthioadenosine/S-adenosylhomocysteine nucl... [more]
UPI001F3E2C397.690e-4071.435'-methylthioadenosine/S-adenosylhomocysteine nucl... [more]
A0A1X7NQY7_9HYPH9.280e-4072.45Adenosylhomocysteine nucleosidase n=1 Tax=Mesorhiz... [more]
A0A1L3SV85_9HYPH1.240e-3968.375'-methylthioadenosine/S-adenosylhomocysteine nucl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102215contigL-digitata_M_contig102215:589..915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1231190.NA8A_22576
Preferred namepfs
PFAMsPNP_UDP_1
Model size327
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00063,RC00318
KEGG koko:K01243
KEGG ReactionR00194,R01401
KEGG Pathwayko00270,ko01100,ko01230,map00270,map01100,map01230
KEGG ModuleM00034,M00609
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.13e-39
EggNOG OGsCOG0775@1|root,COG0775@2|Bacteria,1R9VR@1224|Proteobacteria,2U5H0@28211|Alphaproteobacteria,43QV3@69277|Phyllobacteriaceae
EC3.2.2.9
DescriptionPhosphorylase superfamily
Cds size327
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406627.332609-CDS-L-digitata_M_contig102215:588..9151682406627.332609-CDS-L-digitata_M_contig102215:588..915Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102215 589..915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102215.2.1prot_L-digitata_M_contig102215.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102215 589..915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102215.2.1

>prot_L-digitata_M_contig102215.2.1 ID=prot_L-digitata_M_contig102215.2.1|Name=mRNA_L-digitata_M_contig102215.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=109bp
PLGTQVPGLAKATLSSGANVVSGNAYVPIDADMVDMETYAVKRACDRFKL
PLVALRGISDGAVELRHIDDWTQYLHVIDEKLAAAVDLLEAAIANGTLEW
PALDQDRP*
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mRNA from alignment at L-digitata_M_contig102215:589..915-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102215.2.1 ID=mRNA_L-digitata_M_contig102215.2.1|Name=mRNA_L-digitata_M_contig102215.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=327bp|location=Sequence derived from alignment at L-digitata_M_contig102215:589..915- (Laminaria digitata LdigPH10_18mv male)
CCGCTCGGCACGCAGGTCCCTGGGCTCGCGAAGGCGACGCTGTCGAGCGG
CGCGAACGTTGTCTCAGGCAATGCCTACGTGCCGATCGACGCCGACATGG
TGGATATGGAAACCTATGCGGTCAAGCGCGCCTGCGACCGCTTCAAGCTG
CCGCTGGTGGCGCTACGCGGCATCTCGGACGGTGCTGTGGAGCTTCGCCA
TATCGATGACTGGACGCAGTATCTGCACGTCATCGATGAGAAACTGGCGG
CGGCCGTCGATCTGCTCGAGGCGGCCATTGCCAACGGAACGTTGGAGTGG
CCGGCCCTGGATCAGGACCGGCCCTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig102215:589..915-

>mRNA_L-digitata_M_contig102215.2.1 ID=mRNA_L-digitata_M_contig102215.2.1|Name=mRNA_L-digitata_M_contig102215.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=327bp|location=Sequence derived from alignment at L-digitata_M_contig102215:589..915- (Laminaria digitata LdigPH10_18mv male)
CCGCTCGGCACGCAGGTCCCTGGGCTCGCGAAGGCGACGCTGTCGAGCGG
CGCGAACGTTGTCTCAGGCAATGCCTACGTGCCGATCGACGCCGACATGG
TGGATATGGAAACCTATGCGGTCAAGCGCGCCTGCGACCGCTTCAAGCTG
CCGCTGGTGGCGCTACGCGGCATCTCGGACGGTGCTGTGGAGCTTCGCCA
TATCGATGACTGGACGCAGTATCTGCACGTCATCGATGAGAAACTGGCGG
CGGCCGTCGATCTGCTCGAGGCGGCCATTGCCAACGGAACGTTGGAGTGG
CCGGCCCTGGATCAGGACCGGCCCTAA
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