mRNA_L-digitata_M_contig102182.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102182.1.1
Unique NamemRNA_L-digitata_M_contig102182.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig102182.1.1 vs. uniprot
Match: A0A6H5L089_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L089_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.390e-11
Identity = 33/100 (33.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:   19 AWKCLAERMPNTDLLDRVFAAQSPSGAWKMLRGWFLPKSIATQVKWSDVFDALQMEKGEEPMIFFSRVDKIVGILGSLGVQKSVGDVNRKLVRVLTHNYE 318
            AW  L E    +D+ + +FA      AW  +R W LP + A Q       + ++M  GE P +FF+RVD IV  + ++G++KS   + + +VR L+ +Y+
Sbjct:  447 AWGYLVESTSGSDIEETLFACSCVPEAWTAIREWSLPTTDAEQRLLERQLETVEMSPGENPKLFFARVDGIVNTMRAVGIEKSERQIVQTIVRQLSSDYD 546
[Close]
BLAST of mRNA_L-digitata_M_contig102182.1.1 vs. uniprot
Match: A0A6H5KIP6_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.350e-10
Identity = 31/100 (31.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:   19 AWKCLAERMPNTDLLDRVFAAQSPSGAWKMLRGWFLPKSIATQVKWSDVFDALQMEKGEEPMIFFSRVDKIVGILGSLGVQKSVGDVNRKLVRVLTHNYE 318
            AW  + E    TD+ +R+ A      AW ++  W LP   A +       + ++M  GE+P +FF+RVD ++ I+ ++G++KS   +   +VR L H Y+
Sbjct:  129 AWGYMLEATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYD 228
[Close]
BLAST of mRNA_L-digitata_M_contig102182.1.1 vs. uniprot
Match: A0A6H5JNE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.360e-10
Identity = 31/100 (31.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:   19 AWKCLAERMPNTDLLDRVFAAQSPSGAWKMLRGWFLPKSIATQVKWSDVFDALQMEKGEEPMIFFSRVDKIVGILGSLGVQKSVGDVNRKLVRVLTHNYE 318
            AW  + E    TD+ +R+ A      AW ++  W LP   A +       + ++M  GE+P +FF+RVD ++ I+ ++G++KS   +   +VR L H Y+
Sbjct:  184 AWGYMLEATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYD 283
[Close]
BLAST of mRNA_L-digitata_M_contig102182.1.1 vs. uniprot
Match: A0A6H5L4A7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A7_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.370e-10
Identity = 31/100 (31.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:   19 AWKCLAERMPNTDLLDRVFAAQSPSGAWKMLRGWFLPKSIATQVKWSDVFDALQMEKGEEPMIFFSRVDKIVGILGSLGVQKSVGDVNRKLVRVLTHNYE 318
            AW  + E    TD+ +R+ A      AW ++  W LP   A +       + ++M  GE+P +FF+RVD ++ I+ ++G++KS   +   +VR L H Y+
Sbjct:  129 AWGYMLEATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYD 228
[Close]
BLAST of mRNA_L-digitata_M_contig102182.1.1 vs. uniprot
Match: A0A6H5KYI1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.380e-10
Identity = 31/100 (31.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:   19 AWKCLAERMPNTDLLDRVFAAQSPSGAWKMLRGWFLPKSIATQVKWSDVFDALQMEKGEEPMIFFSRVDKIVGILGSLGVQKSVGDVNRKLVRVLTHNYE 318
            AW  + E    TD+ +R+ A      AW ++  W LP   A +       + ++M  GE+P +FF+RVD ++ I+ ++G++KS   +   +VR L H Y+
Sbjct:  129 AWGYMLEATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYD 228
[Close]
BLAST of mRNA_L-digitata_M_contig102182.1.1 vs. uniprot
Match: A0A6H5JQJ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ2_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.460e-10
Identity = 29/96 (30.21%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:   31 LAERMPNTDLLDRVFAAQSPSGAWKMLRGWFLPKSIATQVKWSDVFDALQMEKGEEPMIFFSRVDKIVGILGSLGVQKSVGDVNRKLVRVLTHNYE 318
            + E    TD+ +R+ A      AW ++  W LP   A +       + ++M  GE+P +FF+RVD ++ I+ ++G++KS   +   +VR L H Y+
Sbjct:    1 MLEATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHKYD 96
[Close]
BLAST of mRNA_L-digitata_M_contig102182.1.1 vs. uniprot
Match: A0A6H5K4K8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.540e-9
Identity = 29/96 (30.21%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:   31 LAERMPNTDLLDRVFAAQSPSGAWKMLRGWFLPKSIATQVKWSDVFDALQMEKGEEPMIFFSRVDKIVGILGSLGVQKSVGDVNRKLVRVLTHNYE 318
            + E    TD+ +R+ A      AW ++  W LP   A +       + ++M  GE+P +FF+RVD ++ I+ ++G++KS   +   +VR L H Y+
Sbjct:    1 MLEATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYD 96
[Close]
BLAST of mRNA_L-digitata_M_contig102182.1.1 vs. uniprot
Match: A0A6H5JQ49_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ49_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.890e-9
Identity = 29/96 (30.21%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:   31 LAERMPNTDLLDRVFAAQSPSGAWKMLRGWFLPKSIATQVKWSDVFDALQMEKGEEPMIFFSRVDKIVGILGSLGVQKSVGDVNRKLVRVLTHNYE 318
            + E    TD+ +R+ A      AW ++  W LP   A +       + ++M  GE+P +FF+RVD ++ I+ ++G++KS   +   +VR L H Y+
Sbjct:    1 MLEATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYD 96
[Close]
BLAST of mRNA_L-digitata_M_contig102182.1.1 vs. uniprot
Match: A0A6H5JS28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS28_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.010e-9
Identity = 29/96 (30.21%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:   31 LAERMPNTDLLDRVFAAQSPSGAWKMLRGWFLPKSIATQVKWSDVFDALQMEKGEEPMIFFSRVDKIVGILGSLGVQKSVGDVNRKLVRVLTHNYE 318
            + E    TD+ +R+ A      AW ++  W LP   A +       + ++M  GE+P +FF+RVD ++ I+ ++G++KS   +   +VR L H Y+
Sbjct:    1 MLEATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYD 96
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102182.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5L089_9PHAE5.390e-1133.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KIP6_9PHAE1.350e-1031.00CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JNE4_9PHAE1.360e-1031.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4A7_9PHAE1.370e-1031.00CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KYI1_9PHAE1.380e-1031.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQJ2_9PHAE3.460e-1030.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K4K8_9PHAE1.540e-930.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQ49_9PHAE3.890e-930.21Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS28_9PHAE4.010e-930.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102182contigL-digitata_M_contig102182:481..798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4096.XP_009777772.1
Model size318
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000576
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,383NP@33090|Viridiplantae,3GWGY@35493|Streptophyta,44U79@71274|asterids
Descriptiontransposition, RNA-mediated
Cds size318
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406626.745009-CDS-L-digitata_M_contig102182:480..7981682406626.745009-CDS-L-digitata_M_contig102182:480..798Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102182 481..798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102182.1.1prot_L-digitata_M_contig102182.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102182 481..798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102182.1.1

>prot_L-digitata_M_contig102182.1.1 ID=prot_L-digitata_M_contig102182.1.1|Name=mRNA_L-digitata_M_contig102182.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=106bp
IKKSRIAWKCLAERMPNTDLLDRVFAAQSPSGAWKMLRGWFLPKSIATQV
KWSDVFDALQMEKGEEPMIFFSRVDKIVGILGSLGVQKSVGDVNRKLVRV
LTHNYE
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mRNA from alignment at L-digitata_M_contig102182:481..798+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102182.1.1 ID=mRNA_L-digitata_M_contig102182.1.1|Name=mRNA_L-digitata_M_contig102182.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=318bp|location=Sequence derived from alignment at L-digitata_M_contig102182:481..798+ (Laminaria digitata LdigPH10_18mv male)
ATCAAGAAATCGCGCATCGCATGGAAATGCTTAGCGGAAAGAATGCCCAA
CACTGACCTTTTAGACAGGGTGTTTGCTGCCCAGTCGCCTAGCGGTGCGT
GGAAAATGCTTCGCGGTTGGTTTCTGCCGAAATCCATAGCTACACAAGTC
AAATGGTCAGATGTTTTTGATGCGTTACAGATGGAGAAGGGAGAAGAGCC
AATGATTTTTTTTAGTCGAGTCGACAAAATCGTGGGAATTTTGGGCTCGC
TTGGTGTACAGAAATCTGTTGGCGATGTCAATCGAAAGTTGGTACGAGTA
CTCACTCACAATTACGAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig102182:481..798+

>mRNA_L-digitata_M_contig102182.1.1 ID=mRNA_L-digitata_M_contig102182.1.1|Name=mRNA_L-digitata_M_contig102182.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=318bp|location=Sequence derived from alignment at L-digitata_M_contig102182:481..798+ (Laminaria digitata LdigPH10_18mv male)
ATCAAGAAATCGCGCATCGCATGGAAATGCTTAGCGGAAAGAATGCCCAA
CACTGACCTTTTAGACAGGGTGTTTGCTGCCCAGTCGCCTAGCGGTGCGT
GGAAAATGCTTCGCGGTTGGTTTCTGCCGAAATCCATAGCTACACAAGTC
AAATGGTCAGATGTTTTTGATGCGTTACAGATGGAGAAGGGAGAAGAGCC
AATGATTTTTTTTAGTCGAGTCGACAAAATCGTGGGAATTTTGGGCTCGC
TTGGTGTACAGAAATCTGTTGGCGATGTCAATCGAAAGTTGGTACGAGTA
CTCACTCACAATTACGAG
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