mRNA_L-digitata_M_contig102063.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-digitata_M_contig102063.1.1
Unique Name	mRNA_L-digitata_M_contig102063.1.1
Type	mRNA
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))

Homology

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BLAST of mRNA_L-digitata_M_contig102063.1.1 vs. uniprot
Match: A0A2S6Q5D9_9PROT (5-nitrosalicylic acid 1,2-dioxygenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6Q5D9_9PROT)

HSP 1 Score: 320 bits (821), Expect = 1.780e-107
Identity = 148/165 (89.70%), Postives = 156/165 (94.55%), Query Frame = 1

Query:    1 SVDSSALHWRW*DVKAELAKLTALGKEYRGRRLYLLFNPMTTRFNGTTPNFFATMTVRPPNIVDQPHRHISSAMNYYFHGTGRSTVEGKVYEWKAGDLMLSAPGWGVHNHASYDESVYELTIQDQPLNIFMESLLWQESLKEPWSVLGANSGFETNAAELLEAGE 495
            SVDS+ALHW W DVKAEL KLTALG +YRGRRLYLLFNPMTTRFNGTTPNFFATMTVRPP IVD+PHRH+SSA+NYYFHGTGRSTVEGKVYEWKAGDLMLSAPGWG+HNHASYDESVYELT+QDQPLNIFMESLLWQE LK PWSVLGANSGFETNA EL +AGE
Sbjct:  218 SVDSNALHWPWEDVKAELDKLTALGSDYRGRRLYLLFNPMTTRFNGTTPNFFATMTVRPPKIVDRPHRHVSSAINYYFHGTGRSTVEGKVYEWKAGDLMLSAPGWGIHNHASYDESVYELTVQDQPLNIFMESLLWQEELKHPWSVLGANSGFETNAEELRQAGE 382

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BLAST of mRNA_L-digitata_M_contig102063.1.1 vs. uniprot
Match: A0A520NRF9_9PROT (Gentisate 1,2-dioxygenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NRF9_9PROT)

HSP 1 Score: 318 bits (814), Expect = 2.050e-106
Identity = 149/165 (90.30%), Postives = 154/165 (93.33%), Query Frame = 1

Query:    1 SVDSSALHWRW*DVKAELAKLTALGKEYRGRRLYLLFNPMTTRFNGTTPNFFATMTVRPPNIVDQPHRHISSAMNYYFHGTGRSTVEGKVYEWKAGDLMLSAPGWGVHNHASYDESVYELTIQDQPLNIFMESLLWQESLKEPWSVLGANSGFETNAAELLEAGE 495
            SVDS ALHW W +VKAEL KLTALG +Y GRRLYLLFNPMTTRFNGTTPNFFATMTVRPP IVD+PHRH+SSAMNYYFHGTGRSTVEGKVYEWKAGDLMLSAPGWGVHNHASYDE VYELTIQDQPLNIFMESLLWQE LK+PWSVLGANSGFETNA EL EAGE
Sbjct:  218 SVDSKALHWPWREVKAELDKLTALGSDYVGRRLYLLFNPMTTRFNGTTPNFFATMTVRPPKIVDKPHRHVSSAMNYYFHGTGRSTVEGKVYEWKAGDLMLSAPGWGVHNHASYDEPVYELTIQDQPLNIFMESLLWQEDLKQPWSVLGANSGFETNAEELREAGE 382

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BLAST of mRNA_L-digitata_M_contig102063.1.1 vs. uniprot
Match: A0A0M4CVW5_SPHS1 (Gentisate 1,2-dioxygenase n=1 Tax=Sphingopyxis sp. (strain 113P3) TaxID=292913 RepID=A0A0M4CVW5_SPHS1)

HSP 1 Score: 266 bits (681), Expect = 1.670e-86
Identity = 127/158 (80.38%), Postives = 137/158 (86.71%), Query Frame = 1

Query:    1 SVDSSALHWRW*DVKAELAKLTALGKEYRGRRLYLLFNPMTTRFNGTTPNFFATMTVRPPNIVDQPHRHISSAMNYYFHGTGRSTVEGKVYEWKAGDLMLSAPGWGVHNHASYDESVYELTIQDQPLNIFMESLLWQESLKEPWSVLGANSGFETNAA 474
            SV S AL+W W DVKA L KL ALGK+Y GRRLYLL+NPMT R NGTTPNFFATMTVRPP IVD+PHRH S+A+NYYF G+GRSTVEGK YEWKAGDLMLSAPGW VHNHASYDE+VYELTIQDQPLNI MESLLWQESLKEP ++LGA  GF TN A
Sbjct:  203 SVTSPALYWPWQDVKAHLDKLEALGKDYIGRRLYLLYNPMTGRTNGTTPNFFATMTVRPPKIVDRPHRHSSAAVNYYFTGSGRSTVEGKTYEWKAGDLMLSAPGWAVHNHASYDEAVYELTIQDQPLNIAMESLLWQESLKEPPALLGAEEGFRTNRA 360

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BLAST of mRNA_L-digitata_M_contig102063.1.1 vs. uniprot
Match: UPI00159CC179 (AraC family ligand binding domain-containing protein n=1 Tax=Sphingobium sp. 15-1 TaxID=2729616 RepID=UPI00159CC179)

HSP 1 Score: 265 bits (678), Expect = 4.740e-86
Identity = 127/158 (80.38%), Postives = 136/158 (86.08%), Query Frame = 1

Query:    1 SVDSSALHWRW*DVKAELAKLTALGKEYRGRRLYLLFNPMTTRFNGTTPNFFATMTVRPPNIVDQPHRHISSAMNYYFHGTGRSTVEGKVYEWKAGDLMLSAPGWGVHNHASYDESVYELTIQDQPLNIFMESLLWQESLKEPWSVLGANSGFETNAA 474
            SV S AL+W W  VK  L KL ALGKEY GRRLYLL+NPMT R NGTTPNFFATMTVRPP IVD+PHRH S+A+NYYF G+GRSTVEGKVYEWKAGDLMLSAPGW VHNHAS+DE VYELTIQDQPLNI MESLLWQESLKEP ++LGA  GFETN A
Sbjct:  203 SVQSPALYWPWEQVKEHLDKLEALGKEYIGRRLYLLYNPMTGRTNGTTPNFFATMTVRPPKIVDRPHRHSSAAVNYYFSGSGRSTVEGKVYEWKAGDLMLSAPGWSVHNHASFDEPVYELTIQDQPLNIAMESLLWQESLKEPPALLGAEEGFETNRA 360

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BLAST of mRNA_L-digitata_M_contig102063.1.1 vs. uniprot
Match: A0A537TUL6_9PROT (Cupin domain-containing protein n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TUL6_9PROT)

HSP 1 Score: 262 bits (670), Expect = 8.440e-85
Identity = 117/163 (71.78%), Postives = 139/163 (85.28%), Query Frame = 1

Query:    1 SVDSSALHWRW*DVKAELAKLTALGKEYRGRRLYLLFNPMTTRFNGTTPNFFATMTVRPPNIVDQPHRHISSAMNYYFHGTGRSTVEGKVYEWKAGDLMLSAPGWGVHNHASYDESVYELTIQDQPLNIFMESLLWQESLKEPWSVLGANSGFETNAAELLEA 489
            +V+S+ LHW W  VK  L KL +LGK Y GRRLY+++NPMT R NG TP+FFAT+T+RPP IVD+PHRH S+A+NYYFHG GRSTVEGKVYEWKAGDLMLSAPGWGVHNHASYDE VYELT+QDQPLNI+MESLLWQE LK P ++LG+ +GF+TN A++  A
Sbjct:  204 AVESNVLHWPWPQVKKHLDKLESLGKSYIGRRLYMMYNPMTGRTNGCTPSFFATITIRPPKIVDRPHRHTSAAINYYFHGRGRSTVEGKVYEWKAGDLMLSAPGWGVHNHASYDEPVYELTVQDQPLNIYMESLLWQEDLKHPAALLGSEAGFDTNRAQIAAA 366

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BLAST of mRNA_L-digitata_M_contig102063.1.1 vs. uniprot
Match: A0A2E5V3E5_9PROT (Gentisate 1,2-dioxygenase n=4 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5V3E5_9PROT)

HSP 1 Score: 261 bits (666), Expect = 4.190e-84
Identity = 120/161 (74.53%), Postives = 140/161 (86.96%), Query Frame = 1

Query:    1 SVDSSALHWRW*DVKAELAKLTALGKEYRGRRLYLLFNPMTTRFNGTTPNFFATMTVRPPNIVDQPHRHISSAMNYYFHGTGRSTVEGKVYEWKAGDLMLSAPGWGVHNHASYD-ESVYELTIQDQPLNIFMESLLWQESLKEPWSVLGANSGFETNAAEL 480
            S++S ALHW W  VKAEL KLTALG +Y GRRLYLL+NPMT R NGTTPNFFAT+T+RPP IVD+PHRH+S+AMNY F G GRSTVEGKVYEW++GDL+L+APGWGVHNHAS   + +YELTIQDQPLNI MESLLWQE LK+PWSVLGA +GF+TN A++
Sbjct:  212 SIESHALHWPWKKVKAELDKLTALGSDYVGRRLYLLWNPMTGRTNGTTPNFFATITIRPPGIVDKPHRHVSAAMNYIFQGEGRSTVEGKVYEWQSGDLLLTAPGWGVHNHASTGTDPIYELTIQDQPLNIVMESLLWQEDLKKPWSVLGAETGFDTNRAKI 372

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BLAST of mRNA_L-digitata_M_contig102063.1.1 vs. uniprot
Match: A0A397P623_9SPHN (Gentisate 1,2-dioxygenase n=3 Tax=Sphingomonadales TaxID=204457 RepID=A0A397P623_9SPHN)

HSP 1 Score: 260 bits (665), Expect = 4.670e-84
Identity = 123/156 (78.85%), Postives = 133/156 (85.26%), Query Frame = 1

Query:    1 SVDSSALHWRW*DVKAELAKLTALGKEYRGRRLYLLFNPMTTRFNGTTPNFFATMTVRPPNIVDQPHRHISSAMNYYFHGTGRSTVEGKVYEWKAGDLMLSAPGWGVHNHASYDESVYELTIQDQPLNIFMESLLWQESLKEPWSVLGANSGFETN 468
            SV S AL+W W  VKA L KL ALGK+Y GRRLYLL+NPMT R NGTTP+FFATMTVRPP IVD+PHRH S+A+NYYF G GRSTVEGK YEWKAGDLMLSAPGW +HNHASYDE VYELTIQDQPLNI MESLLWQESLKEP ++LGA  GF TN
Sbjct:  205 SVTSPALYWPWEQVKAHLDKLEALGKDYAGRRLYLLYNPMTGRTNGTTPSFFATMTVRPPKIVDRPHRHSSAAVNYYFSGAGRSTVEGKTYEWKAGDLMLSAPGWSIHNHASYDEPVYELTIQDQPLNIAMESLLWQESLKEPPALLGAEEGFATN 360

[Close]

BLAST of mRNA_L-digitata_M_contig102063.1.1 vs. uniprot
Match: A0A2E3K9M0_9PROT (Gentisate 1,2-dioxygenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3K9M0_9PROT)

HSP 1 Score: 260 bits (665), Expect = 5.770e-84
Identity = 122/161 (75.78%), Postives = 139/161 (86.34%), Query Frame = 1

Query:    1 SVDSSALHWRW*DVKAELAKLTALGKEYRGRRLYLLFNPMTTRFNGTTPNFFATMTVRPPNIVDQPHRHISSAMNYYFHGTGRSTVEGKVYEWKAGDLMLSAPGWGVHNHASY-DESVYELTIQDQPLNIFMESLLWQESLKEPWSVLGANSGFETNAAEL 480
            SV+S ALHW W  VK EL KLTALG +Y GRRLYLL+NPMT R NGTTPNFFAT+TVRPP IVD+PHRH+S+AMNY F G GRSTVEGKVYEW++GDL+L+APGWG+HNHAS  +E VYELTIQDQPLNI MESLLWQE LKEPWSVLGA +GF TN +++
Sbjct:  211 SVESKALHWPWKKVKKELDKLTALGSDYVGRRLYLLWNPMTGRTNGTTPNFFATITVRPPGIVDKPHRHVSAAMNYIFGGQGRSTVEGKVYEWQSGDLLLTAPGWGIHNHASTGNEPVYELTIQDQPLNIVMESLLWQEDLKEPWSVLGAETGFNTNRSKV 371

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BLAST of mRNA_L-digitata_M_contig102063.1.1 vs. uniprot
Match: A0A0Q8Q8X4_9SPHN (Gentisate 1,2-dioxygenase n=2 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A0Q8Q8X4_9SPHN)

HSP 1 Score: 259 bits (662), Expect = 1.250e-83
Identity = 123/158 (77.85%), Postives = 135/158 (85.44%), Query Frame = 1

Query:    1 SVDSSALHWRW*DVKAELAKLTALGKEYRGRRLYLLFNPMTTRFNGTTPNFFATMTVRPPNIVDQPHRHISSAMNYYFHGTGRSTVEGKVYEWKAGDLMLSAPGWGVHNHASYDESVYELTIQDQPLNIFMESLLWQESLKEPWSVLGANSGFETNAA 474
            SV S AL+W W +VK  L KL ALGK+Y GRRLYLL+NPMT R NGTTPNFFAT+T+RPP IVD+PHRH S+A+NYYF G+GRSTVEGK YEWKAGDLMLSAPGW VHNHASYDE VYELTIQDQPLNI MESLLWQESLKEP ++LGA  GF TN A
Sbjct:  203 SVTSPALYWPWQEVKHHLDKLEALGKDYIGRRLYLLYNPMTGRTNGTTPNFFATITMRPPKIVDRPHRHSSAAVNYYFSGSGRSTVEGKTYEWKAGDLMLSAPGWSVHNHASYDEPVYELTIQDQPLNIAMESLLWQESLKEPPALLGAEEGFATNRA 360

[Close]

BLAST of mRNA_L-digitata_M_contig102063.1.1 vs. uniprot
Match: A0A2E9EBA6_9GAMM (Gentisate 1,2-dioxygenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E9EBA6_9GAMM)

HSP 1 Score: 258 bits (660), Expect = 3.290e-83
Identity = 120/162 (74.07%), Postives = 138/162 (85.19%), Query Frame = 1

Query:    1 SVDSSALHWRW*DVKAELAKLTALGKEYRGRRLYLLFNPMTTRFNGTTPNFFATMTVRPPNIVDQPHRHISSAMNYYFHGTGRSTVEGKVYEWKAGDLMLSAPGWGVHNHASY-DESVYELTIQDQPLNIFMESLLWQESLKEPWSVLGANSGFETNAAELL 483
            SV+S ALHW W  VK EL K TALG +Y GRRLYLL+NPMT R NGTTPNFFAT+T+RPP IVD+PHRH+S+AMNY F G GRSTVEGKVYEW++GDL+L+APGWG+HNHAS  DE VYELTIQDQPLNI MESLLWQE L+EPWSVLGA +GF TN  +++
Sbjct:  211 SVESKALHWPWKKVKKELDKXTALGSDYVGRRLYLLWNPMTGRTNGTTPNFFATITIRPPGIVDKPHRHVSAAMNYIFGGQGRSTVEGKVYEWQSGDLLLTAPGWGIHNHASTGDEPVYELTIQDQPLNIVMESLLWQEDLQEPWSVLGAETGFNTNREKVV 372

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig102063.1.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig102063.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2S6Q5D9_9PROT	1.780e-107	89.70	5-nitrosalicylic acid 1,2-dioxygenase n=3 Tax=Alph...	[more]
A0A520NRF9_9PROT	2.050e-106	90.30	Gentisate 1,2-dioxygenase n=1 Tax=Rhodospirillacea...	[more]
A0A0M4CVW5_SPHS1	1.670e-86	80.38	Gentisate 1,2-dioxygenase n=1 Tax=Sphingopyxis sp....	[more]
UPI00159CC179	4.740e-86	80.38	AraC family ligand binding domain-containing prote...	[more]
A0A537TUL6_9PROT	8.440e-85	71.78	Cupin domain-containing protein n=4 Tax=Alphaprote...	[more]
A0A2E5V3E5_9PROT	4.190e-84	74.53	Gentisate 1,2-dioxygenase n=4 Tax=Rhodospirillacea...	[more]
A0A397P623_9SPHN	4.670e-84	78.85	Gentisate 1,2-dioxygenase n=3 Tax=Sphingomonadales...	[more]
A0A2E3K9M0_9PROT	5.770e-84	75.78	Gentisate 1,2-dioxygenase n=1 Tax=Rhodospirillacea...	[more]
A0A0Q8Q8X4_9SPHN	1.250e-83	77.85	Gentisate 1,2-dioxygenase n=2 Tax=Sphingomonadacea...	[more]
A0A2E9EBA6_9GAMM	3.290e-83	74.07	Gentisate 1,2-dioxygenase n=1 Tax=Gammaproteobacte...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig102063	contig	L-digitata_M_contig102063:5..502 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	13689.BV96_04319
PFAMs	AraC_binding
Model size	498
Max annot lvl	204457\|Sphingomonadales
Hectar predicted targeting category	other localisation
Exons	1
Evalue	2.58e-65
EggNOG OGs	COG3435@1\|root,COG3435@2\|Bacteria,1R7Q6@1224\|Proteobacteria,2UNP0@28211\|Alphaproteobacteria,2K17F@204457\|Sphingomonadales
Description	Gentisate 1,2-dioxygenase
Cds size	381
COG category	Q

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406625.3941748-UTR-L-digitata_M_contig102063:4..121	1682406625.3941748-UTR-L-digitata_M_contig102063:4..121	Laminaria digitata LdigPH10_18mv male	UTR	L-digitata_M_contig102063 5..121 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406625.4027557-CDS-L-digitata_M_contig102063:121..502	1682406625.4027557-CDS-L-digitata_M_contig102063:121..502	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig102063 122..502 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig102063.1.1	prot_L-digitata_M_contig102063.1.1	Laminaria digitata LdigPH10_18mv male	polypeptide	L-digitata_M_contig102063 122..502 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-digitata_M_contig102063:5..502+
coding sequence from alignment at L-digitata_M_contig102063:5..502+

protein sequence of mRNA_L-digitata_M_contig102063.1.1

>prot_L-digitata_M_contig102063.1.1 ID=prot_L-digitata_M_contig102063.1.1|Name=mRNA_L-digitata_M_contig102063.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=127bp
MTTRFNGTTPNFFATMTVRPPNIVDQPHRHISSAMNYYFHGTGRSTVEGK
VYEWKAGDLMLSAPGWGVHNHASYDESVYELTIQDQPLNIFMESLLWQES
LKEPWSVLGANSGFETNAAELLEAGE*

mRNA from alignment at L-digitata_M_contig102063:5..502+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-digitata_M_contig102063.1.1 ID=mRNA_L-digitata_M_contig102063.1.1|Name=mRNA_L-digitata_M_contig102063.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=498bp|location=Sequence derived from alignment at L-digitata_M_contig102063:5..502+ (Laminaria digitata LdigPH10_18mv male)
TCGGTCGATTCGAGCGCACTGCACTGGCGGTGGTAGGATGTGAAAGCCGA
GCTCGCCAAGCTGACCGCGCTGGGCAAGGAATATCGCGGCCGCCGGCTCT
ACCTGCTGTTCAATCCGATGACCACGCGGTTCAACGGCACCACGCCGAAC
TTCTTCGCGACCATGACTGTGCGCCCGCCGAATATCGTCGATCAGCCGCA
CCGCCATATCTCGTCGGCGATGAACTATTATTTCCATGGCACCGGCCGGT
CGACTGTCGAAGGCAAGGTATACGAATGGAAAGCCGGCGATCTGATGCTT
TCGGCGCCGGGCTGGGGCGTGCACAACCATGCTTCCTACGACGAATCCGT
CTACGAGCTGACGATCCAGGACCAGCCGCTGAATATCTTCATGGAAAGCC
TGCTGTGGCAGGAAAGCCTGAAAGAGCCGTGGTCGGTCCTCGGCGCCAAT
TCCGGGTTCGAGACCAATGCCGCGGAGCTTCTCGAAGCCGGCGAATAG

Coding sequence (CDS) from alignment at L-digitata_M_contig102063:5..502+

>mRNA_L-digitata_M_contig102063.1.1 ID=mRNA_L-digitata_M_contig102063.1.1|Name=mRNA_L-digitata_M_contig102063.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=381bp|location=Sequence derived from alignment at L-digitata_M_contig102063:5..502+ (Laminaria digitata LdigPH10_18mv male)
ATGACCACGCGGTTCAACGGCACCACGCCGAACTTCTTCGCGACCATGAC
TGTGCGCCCGCCGAATATCGTCGATCAGCCGCACCGCCATATCTCGTCGG
CGATGAACTATTATTTCCATGGCACCGGCCGGTCGACTGTCGAAGGCAAG
GTATACGAATGGAAAGCCGGCGATCTGATGCTTTCGGCGCCGGGCTGGGG
CGTGCACAACCATGCTTCCTACGACGAATCCGTCTACGAGCTGACGATCC
AGGACCAGCCGCTGAATATCTTCATGGAAAGCCTGCTGTGGCAGGAAAGC
CTGAAAGAGCCGTGGTCGGTCCTCGGCGCCAATTCCGGGTTCGAGACCAA
TGCCGCGGAGCTTCTCGAAGCCGGCGAATAG