mRNA_L-digitata_M_contig101936.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101936.1.1
Unique NamemRNA_L-digitata_M_contig101936.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101936.1.1 vs. uniprot
Match: D8LEU4_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU4_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.110e-35
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 DGDEVVLRRTIGLKKDEFFLNRKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKV 228
            DGDEVVLRR IG+KKDEFFLN KRVTKQEVSSLLESAGFSK+NPYYIVQQGKVS LTLMKDAERLNLLKEVAGTKV
Sbjct:   93 DGDEVVLRRNIGMKKDEFFLNLKRVTKQEVSSLLESAGFSKANPYYIVQQGKVSALTLMKDAERLNLLKEVAGTKV 168
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BLAST of mRNA_L-digitata_M_contig101936.1.1 vs. uniprot
Match: A0A836CH46_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH46_9STRA)

HSP 1 Score: 135 bits (339), Expect = 3.840e-35
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:    1 DGDEVVLRRTIGLKKDEFFLNRKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKV 228
            DGDEVVLRRTIGLKKDEFFLNRKRVTK +VSSLLESAGFSKSNPYYIVQQGKVS LT+M D ERLNLLKEVAGTKV
Sbjct:   93 DGDEVVLRRTIGLKKDEFFLNRKRVTKADVSSLLESAGFSKSNPYYIVQQGKVSALTMMHDTERLNLLKEVAGTKV 168
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BLAST of mRNA_L-digitata_M_contig101936.1.1 vs. uniprot
Match: A0A7S1U8S3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8S3_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.380e-34
Identity = 67/76 (88.16%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:    1 DGDEVVLRRTIGLKKDEFFLNRKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKV 228
            DGDE+VLRRT+GLKKDEFFLNR+RVTK EV SLLESAGFSKSNPYYIVQQGKV+ L LMKD+ERLNLLKEVAGTKV
Sbjct:   93 DGDEIVLRRTVGLKKDEFFLNRRRVTKGEVGSLLESAGFSKSNPYYIVQQGKVNALCLMKDSERLNLLKEVAGTKV 168
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BLAST of mRNA_L-digitata_M_contig101936.1.1 vs. uniprot
Match: A0A7S2F438_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F438_9STRA)

HSP 1 Score: 130 bits (328), Expect = 5.300e-34
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    1 DGDEVVLRRTIGLKKDEFFLNRKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKV 228
            DGDEVVLRRTIGLKKDEFFLNRKRVTK EVSSLLESAGFSKSNPYYIVQQGKV+ L LMKD ERL LLKEV GT+V
Sbjct:  113 DGDEVVLRRTIGLKKDEFFLNRKRVTKSEVSSLLESAGFSKSNPYYIVQQGKVNALCLMKDQERLQLLKEVGGTRV 188
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BLAST of mRNA_L-digitata_M_contig101936.1.1 vs. uniprot
Match: A0A6H5KK26_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK26_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 7.370e-34
Identity = 71/93 (76.34%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:    1 DGDEVVLRRTIGLKKDEFFLNRKRVTKQEV-----------------SSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKV 228
            DGDEVVLRR IG+KKDEFFLN KRVTKQEV                 SSLLESAGFSK+NPYYIVQQGKVS LTLMKDAERLNLLKEVAGTKV
Sbjct:   93 DGDEVVLRRNIGMKKDEFFLNLKRVTKQEVGGKEEEFDRGVIGALKVSSLLESAGFSKANPYYIVQQGKVSALTLMKDAERLNLLKEVAGTKV 185
[Close]
BLAST of mRNA_L-digitata_M_contig101936.1.1 vs. uniprot
Match: W7T3Q8_9STRA (Structural maintenance of chromosomes protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3Q8_9STRA)

HSP 1 Score: 131 bits (329), Expect = 8.580e-34
Identity = 67/76 (88.16%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 DGDEVVLRRTIGLKKDEFFLNRKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKV 228
            +GDEVVLRRTIG+KKDEFFLNRKRVTKQEVSSLLESAGFS+SNPYYIVQQGKV+ LTLM+D +RL+LLKEVAGTKV
Sbjct:   93 EGDEVVLRRTIGVKKDEFFLNRKRVTKQEVSSLLESAGFSRSNPYYIVQQGKVNMLTLMRDDQRLDLLKEVAGTKV 168
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BLAST of mRNA_L-digitata_M_contig101936.1.1 vs. uniprot
Match: A0A7R9U6Y3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6Y3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 7.500e-33
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    1 DGDEVVLRRTIGLKKDEFFLNRKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKV 228
            DGDE+VLRRT+GLKKDEFFLNR+RV K EV SLLESAGFSKSNPYYIV+QGKV+ L LMKD ERLNLLKEVAGTKV
Sbjct:   93 DGDEIVLRRTVGLKKDEFFLNRRRVRKGEVESLLESAGFSKSNPYYIVEQGKVNALCLMKDTERLNLLKEVAGTKV 168
[Close]
BLAST of mRNA_L-digitata_M_contig101936.1.1 vs. uniprot
Match: A0A397B2P4_9STRA (SMC_N domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B2P4_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.450e-31
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:    1 DGDEVVLRRTIGLKKDEFFLNRKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKV 228
            D ++VVLRRTIG+KKDEFFLNRK +TKQ+V+ LLESAGFS+SNPYYIVQQGKV+ L LMKD ERL LLK+VAGTKV
Sbjct:   93 DTEDVVLRRTIGVKKDEFFLNRKHITKQDVNHLLESAGFSRSNPYYIVQQGKVNALALMKDKERLELLKDVAGTKV 168
[Close]
BLAST of mRNA_L-digitata_M_contig101936.1.1 vs. uniprot
Match: A0A7S1UX63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UX63_9STRA)

HSP 1 Score: 116 bits (290), Expect = 7.300e-31
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 DGDEVVLRRTIGLKKDEFFLNRKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKV 228
            + DEVVLRRT+G KKDEFFL RKR TK EV SLLE AGFSKSNPYYIVQQGKV+ L +M D+ERLNLLKEVAGT V
Sbjct:   70 NSDEVVLRRTVGHKKDEFFLQRKRATKSEVLSLLEGAGFSKSNPYYIVQQGKVNALCVMNDSERLNLLKEVAGTTV 145
[Close]
BLAST of mRNA_L-digitata_M_contig101936.1.1 vs. uniprot
Match: A0A7S1CD09_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD09_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.410e-30
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 DGDEVVLRRTIGLKKDEFFLNRKRVTKQEVSSLLESAGFSKSNPYYIVQQGKVSTLTLMKDAERLNLLKEVAGTKV 228
            D +EVVLRRTIGLKKDE+F+NRKR+ K +V +LLESAGFS+SNPYYIVQQGKV+ L  MKD ERL LLKEVAGT V
Sbjct:   28 DHEEVVLRRTIGLKKDEYFMNRKRIRKSDVVNLLESAGFSRSNPYYIVQQGKVAALCTMKDRERLQLLKEVAGTTV 103
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101936.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEU4_ECTSI1.110e-3593.42Structural maintenance of chromosomes protein n=1 ... [more]
A0A836CH46_9STRA3.840e-3592.11Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S1U8S3_9STRA3.380e-3488.16Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2F438_9STRA5.300e-3489.47Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A6H5KK26_9PHAE7.370e-3476.34SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
W7T3Q8_9STRA8.580e-3488.16Structural maintenance of chromosomes protein n=2 ... [more]
A0A7R9U6Y3_9STRA7.500e-3385.53Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A397B2P4_9STRA1.450e-3178.95SMC_N domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S1UX63_9STRA7.300e-3178.95Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S1CD09_9STRA1.410e-3076.32Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101936contigL-digitata_M_contig101936:691..918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEU4
Preferred nameSMC3
PFAMsSMC_N,SMC_hinge
Model size228
Max annot lvl2759|Eukaryota
KEGG koko:K06669
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000798,GO:0000800,GO:0000819,GO:0000922,GO:0001736,GO:0001737,GO:0001738,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003774,GO:0003777,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005911,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007088,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007135,GO:0007164,GO:0007275,GO:0007346,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008092,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008278,GO:0008544,GO:0009506,GO:0009507,GO:0009536,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009913,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0015630,GO:0015631,GO:0016043,GO:0016301,GO:0016310,GO:0016363,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022008,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030030,GO:0030054,GO:0030154,GO:0030182,GO:0030435,GO:0030437,GO:0030855,GO:0030892,GO:0030893,GO:0031012,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032505,GO:0032875,GO:0032876,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034293,GO:0034399,GO:0034502,GO:0034613,GO:0034641,GO:0034990,GO:0034991,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0035821,GO:0035825,GO:0036033,GO:0036211,GO:0040012,GO:0040017,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0043934,GO:0043935,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044788,GO:0044789,GO:0044791,GO:0044794,GO:0044877,GO:0045132,GO:0045143,GO:0045144,GO:0045786,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048468,GO:0048487,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048524,GO:0048563,GO:0048569,GO:0048646,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051171,GO:0051172,GO:0051177,GO:0051179,GO:0051276,GO:0051321,GO:0051493,GO:0051641,GO:0051702,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051817,GO:0051851,GO:0055044,GO:0060147,GO:0060236,GO:0060255,GO:0060429,GO:0060562,GO:0060966,GO:0060968,GO:0061775,GO:0061780,GO:0061982,GO:0061983,GO:0062022,GO:0062023,GO:0065007,GO:0065009,GO:0070013,GO:0070192,GO:0070193,GO:0070507,GO:0070601,GO:0070727,GO:0070840,GO:0071168,GO:0071704,GO:0071840,GO:0071921,GO:0071960,GO:0071962,GO:0072686,GO:0080090,GO:0090169,GO:0090224,GO:0090304,GO:0090329,GO:0097159,GO:0097431,GO:0098687,GO:0098727,GO:0098813,GO:0099086,GO:0120036,GO:0140013,GO:0140014,GO:0140096,GO:1900368,GO:1901360,GO:1901363,GO:1901564,GO:1901673,GO:1902115,GO:1902186,GO:1902188,GO:1903046,GO:1903047,GO:1903900,GO:1903902,GO:1990414,GO:2000104,GO:2000112,GO:2000113
Exons1
Evalue1.81e-36
EggNOG OGsCOG1196@1|root,KOG0964@2759|Eukaryota
Descriptionmaintenance of mitotic sister chromatid cohesion, centromeric
Cds size228
COG categoryD
BRITEko00000,ko00001,ko00535,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406624.3983696-CDS-L-digitata_M_contig101936:690..9181682406624.3983696-CDS-L-digitata_M_contig101936:690..918Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101936 691..918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101936.1.1prot_L-digitata_M_contig101936.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101936 691..918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101936.1.1

>prot_L-digitata_M_contig101936.1.1 ID=prot_L-digitata_M_contig101936.1.1|Name=mRNA_L-digitata_M_contig101936.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=76bp
DGDEVVLRRTIGLKKDEFFLNRKRVTKQEVSSLLESAGFSKSNPYYIVQQ
GKVSTLTLMKDAERLNLLKEVAGTKV
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mRNA from alignment at L-digitata_M_contig101936:691..918+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101936.1.1 ID=mRNA_L-digitata_M_contig101936.1.1|Name=mRNA_L-digitata_M_contig101936.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=228bp|location=Sequence derived from alignment at L-digitata_M_contig101936:691..918+ (Laminaria digitata LdigPH10_18mv male)
GACGGTGATGAGGTGGTCTTGCGGCGCACGATCGGGCTGAAAAAGGATGA
GTTCTTCCTGAACCGCAAGCGGGTGACGAAGCAGGAGGTGTCGAGCCTGC
TGGAGAGCGCCGGCTTCTCCAAGTCCAACCCGTACTACATCGTGCAGCAG
GGGAAGGTGTCGACGCTAACGCTCATGAAGGACGCCGAGCGGCTCAACCT
CTTGAAGGAGGTCGCCGGGACGAAGGTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101936:691..918+

>mRNA_L-digitata_M_contig101936.1.1 ID=mRNA_L-digitata_M_contig101936.1.1|Name=mRNA_L-digitata_M_contig101936.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=228bp|location=Sequence derived from alignment at L-digitata_M_contig101936:691..918+ (Laminaria digitata LdigPH10_18mv male)
GACGGTGATGAGGTGGTCTTGCGGCGCACGATCGGGCTGAAAAAGGATGA
GTTCTTCCTGAACCGCAAGCGGGTGACGAAGCAGGAGGTGTCGAGCCTGC
TGGAGAGCGCCGGCTTCTCCAAGTCCAACCCGTACTACATCGTGCAGCAG
GGGAAGGTGTCGACGCTAACGCTCATGAAGGACGCCGAGCGGCTCAACCT
CTTGAAGGAGGTCGCCGGGACGAAGGTG
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