mRNA_L-digitata_M_contig10184.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10184.1.1
Unique NamemRNA_L-digitata_M_contig10184.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10184.1.1 vs. uniprot
Match: D8LTT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT2_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 8.610e-28
Identity = 72/123 (58.54%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:   10 SFRSASWADKLVVKREQQSVLVRQLERELECTVSALKDERRERRAQTEALKAKVDGIRGTVREREEELERRGAMAQTLMTELEXXXXXXXXXXXXXXXXXXXXXKTISRLREDKSEIEARLRQ 378
            +FRSASWA+KLV KRE+QSVLV+QLEREL  TVSALKDERRERR QTE L+ K++  R TV +RE EL+RR  M  TLM ELE                     KT++RLRED  E+EARLRQ
Sbjct:  511 AFRSASWAEKLVTKREEQSVLVKQLERELASTVSALKDERRERRGQTETLRRKLEETRATVGDREAELQRRERMTTTLMGELEALQSRCDRLVASREERAEEADKTMARLREDNRELEARLRQ 633
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BLAST of mRNA_L-digitata_M_contig10184.1.1 vs. uniprot
Match: A0A6H5KDC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC5_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.380e-23
Identity = 74/139 (53.24%), Postives = 84/139 (60.43%), Query Frame = 1 
Query:   10 SFRSASWADKLVVKREQQSVLVRQLERELECTVSALKDERRERRAQTEALKAKVDGIRGTVREREEELERRGAMAQTLMTELEXXXXXXXXXXXXXXXXXXXXXKTISRLREDKSEIEARLRQADAAAAEARVCRDGAE 426
            +F SASWA KLV KRE+QSVLV+QLEREL  TVSALKDERRERR QTE L+ K++  R  V  RE EL+RR  M  TLM ELE                     KT+           ARLR+ADAAAAEAR  R GA+
Sbjct:  502 AFSSASWAAKLVTKREEQSVLVKQLERELASTVSALKDERRERRGQTETLRRKLEETRAAVGYREAELQRRERMTTTLMGELEALQSRCDRLVASREERAEEADKTM-----------ARLREADAAAAEARSARAGAD 629
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10184.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTT2_ECTSI8.610e-2858.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDC5_9PHAE2.380e-2353.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10184contigL-digitata_M_contig10184:2028..4788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size426
Hectar predicted targeting categoryother localisation
Exons4
Cds size426
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.4613237-CDS-L-digitata_M_contig10184:2027..21081682406623.4613237-CDS-L-digitata_M_contig10184:2027..2108Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10184 2028..2108 -
1682406623.4792016-CDS-L-digitata_M_contig10184:2751..28781682406623.4792016-CDS-L-digitata_M_contig10184:2751..2878Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10184 2752..2878 -
1682406623.491282-CDS-L-digitata_M_contig10184:3532..36871682406623.491282-CDS-L-digitata_M_contig10184:3532..3687Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10184 3533..3687 -
1682406623.5036013-CDS-L-digitata_M_contig10184:4725..47881682406623.5036013-CDS-L-digitata_M_contig10184:4725..4788Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10184 4726..4788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10184.1.1prot_L-digitata_M_contig10184.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10184 2028..4788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10184.1.1

>prot_L-digitata_M_contig10184.1.1 ID=prot_L-digitata_M_contig10184.1.1|Name=mRNA_L-digitata_M_contig10184.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=142bp
VESSFRSASWADKLVVKREQQSVLVRQLERELECTVSALKDERRERRAQT
EALKAKVDGIRGTVREREEELERRGAMAQTLMTELEALQSRCDRLSTWRE
ERTEEAEKTISRLREDKSEIEARLRQADAAAAEARVCRDGAE
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mRNA from alignment at L-digitata_M_contig10184:2028..4788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10184.1.1 ID=mRNA_L-digitata_M_contig10184.1.1|Name=mRNA_L-digitata_M_contig10184.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2761bp|location=Sequence derived from alignment at L-digitata_M_contig10184:2028..4788- (Laminaria digitata LdigPH10_18mv male)
GTCGAGAGTTCTTTCCGAAGCGCATCCTGGGCGGACAAGCTTGTGGTCAA
GCGGGAGCAGCAGGTACGGGGGTGGGGGCTGGGGGGTGGACGGTGGGTCC
TTTGTGTGTGTCCTCGAGAGGAAGCGATAGCGGTGTTGGCGTTCGCTTGC
CGGTAAAGGGGGAGGGAGGCTTTTTAGCTATTGTTCGTGTTCCGCGCCGT
ATTAACTCCCACAATTCCGGAGGGGTAGTACACATAGTGTTTTTTATCCG
TATGTATGTAACTAGTGACAACCCTTTTCTTACCCCCCCCCAAGAACCAA
CTGCAGTAGTATCACCCGGGTGATATACTGACTTGATACCGATGTTTAGA
TATTCTCACAGTAGCAGCGCTGGGGGGATAAACTGGCATGACGTCGAGGT
TGATTTAGCTGGTGAGATGGAAGGTTCCACCCACGCTGCTATGGTTCGTT
CTACCTCGCCGGCCGCTATCGATAGCTCTGCCGCAATGCTACTGTACCTG
CCACGCCTTCGTCGTTACCCCTGACTGACCCCCCCAACCCCCCGATAGAT
GGATAGATGGTGACCACAGACGGCGAAACAGGTAGGGGATAATATGTGTA
AAACATTTTAATGTAAGAAATGGAAAAAAGTAATGAGCGCCCAAATGTAG
GAGGTATCTCTATTAGGAGTAGGAACGGTGCTCCGTCTCGAAGGGGATGC
GTGGTCAATGGTCAAATGACTAAGGCAAGCAGCAAATGAGTATGCCCCCC
CCCCCAACCCCCCGCCCACACACACACCGATTCCGACTATTGCTCCCCCA
TGCACAACATGCAACATTTCGCTCCGAACGACGCTGTAAAAAGAACCGTC
CGCCCTTTCCGCCCCCCCCCTCCCGCTTGGTGCAAAGCAATGTCTGCCTG
GTCGGTGAATACCCGACGTGCTCCGTCCCGGCTTTGTGCGTAGCGATGTG
AGGGTCTATCGCCATACGACTACGGCCGTGCATGACAATGATTTCCCACC
CCTGCCGTCCCCCTGCACCCCCACCCTCCCAACCCACCCCCACGCCCCGA
TTCCGATTATTGACTCCAACGTTTCGCCCCGAATTACGTTTTTTGGAACA
GAGTGTTTTGGTTCGGCAGCTTGAGAGGGAGCTAGAATGTACGGTGTCTG
CGCTTAAGGATGAGAGGAGGGAGAGGAGAGCGCAAACGGAGGCGCTTAAG
GCTAAGGTAGATGGGATCAGAGGCACCGTGAGGGAGAGAGAGGAGGAGCT
AGAGAGGTGAGGTGGGATGTTATTTTTTTTTGTGATTTGTGCTTTGTTAT
TTGTGATTTGTGGTGTTTTGAGTTGTGATTTGTCATTGGTGTGTTTGTTG
TAAATCTAGCGATTTATGATTTGACGAACTGTGATTTGTGATTAGGGACT
TTGTGATTAGAGCTGCATGCTGTGTGAAGTATGCTGGAGAAGTGAGGTGG
GGGTTTATGATTTGTGATTTTTGCGATTTATGGTGTTTGAGTTGTGATTT
GTTATCTGTGTATTTGTTGTAAATCTAGCGATTTAAGTTTTACGATCTGT
GATTTGTGATTTGTGATTTTGTGATTACATATGTGCAGTATGATAGTAAA
AAGCATAATGAGGAGGGGGGGGGGGCATAGTAGCCCCTCTACAACTGCAC
CCATGTTTCTGGGGCAAACTACTTATAATCTTAATTGGGTCATTTTTCGA
CATTTTAAGACAAAAATGGTTAATCTGTTGATCCTGTTCTAAACCCGAAA
AAACGCCTCAGTTTCATGATGTTTTGTTTTTGTCGCATTTTGCCGTTTTC
TTAACGAAAAAGCGAAAAAGAAGAGTACTCTGTTGATTTTCTTCTAATCC
CCGAACGCCTCGGTATCATATGTCTTGTTTTTGCCGCATTTTGCCGTTTT
GTTAACGAAGGCGAGGAGCCATGGCCCAAACCCTTATGACGGAGCTGGAA
GCGCTGCAGTCCCGCTGCGACCGGCTGTCGACGTGGCGAGAGGAGCGGAC
GGAGGAGGCTGAGAAGACCATATCACGCCTCCGAGAGGTGCAGGAAAACC
GGGACAACGTAAACAACTGTGAATAGTTAATAACTGCACCCACGTTTCGA
CGACAGCAAAGCTATTTATACCGTACCCGTAGGTAGCCCCTTTTAAAGGT
CCCTATCGTAGTGCGTTCGGGATTGGAGGCCCCTTGCATATCAGAGTTAG
CACCGGTCGCTTATATCTGTACAACGATATTTAGATTTTAGGCAAGGATT
AGGCAATGCTTAAAGTGCCAAGAGCAAACAGAGAACAAACACAATTTTTG
CCCCCCCCCATCCCGAACACCTGACGGCGCTTCGCGCTTGGTGCAAGCAA
TGCCTGCCTGGTCGGTGAAAACCCGACGTGCTCCGTCCGCCCCGGCAGTG
TAGGGATGCGAGGGTCTATGGTCATACGGCTACGGCCATGCATACTAATG
AGTAACCCCCCCCCTCCCGTAGGATAAGATAAGTAAAAAAAAACTATTTA
ATATATGGAAAAAAACGTAAATGAGGGACCAATTGTTGGAGGTGATTCTA
TTAGGAGTAGAAACGGTGCTACGTATCGAAAGGTGTGTGTGGTAAATGGT
CAAATGACTAAGGCAAGCAACAAATGAGTACCCCCCCCCCCCCCTCACCT
CCCGCCTTTGTCCTACTTACGAACTCCAAGGATAAGAGCGAGATCGAAGC
GCGGCTAAGACAAGCCGATGCTGCCGCGGCGGAGGCTCGCGTGTGTCGGG
ATGGGGCGGAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10184:2028..4788-

>mRNA_L-digitata_M_contig10184.1.1 ID=mRNA_L-digitata_M_contig10184.1.1|Name=mRNA_L-digitata_M_contig10184.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=426bp|location=Sequence derived from alignment at L-digitata_M_contig10184:2028..4788- (Laminaria digitata LdigPH10_18mv male)
GTCGAGAGTTCTTTCCGAAGCGCATCCTGGGCGGACAAGCTTGTGGTCAA
GCGGGAGCAGCAGAGTGTTTTGGTTCGGCAGCTTGAGAGGGAGCTAGAAT
GTACGGTGTCTGCGCTTAAGGATGAGAGGAGGGAGAGGAGAGCGCAAACG
GAGGCGCTTAAGGCTAAGGTAGATGGGATCAGAGGCACCGTGAGGGAGAG
AGAGGAGGAGCTAGAGAGGCGAGGAGCCATGGCCCAAACCCTTATGACGG
AGCTGGAAGCGCTGCAGTCCCGCTGCGACCGGCTGTCGACGTGGCGAGAG
GAGCGGACGGAGGAGGCTGAGAAGACCATATCACGCCTCCGAGAGGATAA
GAGCGAGATCGAAGCGCGGCTAAGACAAGCCGATGCTGCCGCGGCGGAGG
CTCGCGTGTGTCGGGATGGGGCGGAG
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