mRNA_L-digitata_M_contig101771.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-digitata_M_contig101771.2.1
Unique Name	mRNA_L-digitata_M_contig101771.2.1
Type	mRNA
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))

Homology

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BLAST of mRNA_L-digitata_M_contig101771.2.1 vs. uniprot
Match: A0A2E5L7U9_9PROT (30S ribosomal protein S15 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5L7U9_9PROT)

HSP 1 Score: 159 bits (402), Expect = 3.320e-49
Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 1

Query:    1 MSITQERKSELIKEYSTGEYDTGSPEVQVAILSERIGNLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQSRYEKLIASLGLRR 267
            MSITQERK+ELI EYSTGE+DTGSPEVQVAILSERI NLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQSRYE LI  +GLRR
Sbjct:    1 MSITQERKAELITEYSTGEHDTGSPEVQVAILSERINNLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQSRYENLIGQIGLRR 89

[Close]

BLAST of mRNA_L-digitata_M_contig101771.2.1 vs. uniprot
Match: A0A2D8PRU8_9PROT (30S ribosomal protein S15 n=3 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PRU8_9PROT)

HSP 1 Score: 156 bits (395), Expect = 3.890e-48
Identity = 82/89 (92.13%), Postives = 83/89 (93.26%), Query Frame = 1

Query:    1 MSITQERKSELIKEYSTGEYDTGSPEVQVAILSERIGNLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQSRYEKLIASLGLRR 267
            MSITQERK+ELI EYSTGE DTGSPEVQVAILSERI NLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQSRYE LI  LGLRR
Sbjct:    1 MSITQERKAELIGEYSTGEQDTGSPEVQVAILSERIVNLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQSRYETLIGRLGLRR 89

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BLAST of mRNA_L-digitata_M_contig101771.2.1 vs. uniprot
Match: A0A2S6QAG1_9PROT (30S ribosomal protein S15 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QAG1_9PROT)

HSP 1 Score: 154 bits (388), Expect = 4.540e-47
Identity = 79/89 (88.76%), Postives = 82/89 (92.13%), Query Frame = 1

Query:    1 MSITQERKSELIKEYSTGEYDTGSPEVQVAILSERIGNLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQSRYEKLIASLGLRR 267
            MSITQERK+ LI +YSTGE+DTGSPEVQVAILSERIG LTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKD SRYE LI  LGLRR
Sbjct:    1 MSITQERKAALIADYSTGEHDTGSPEVQVAILSERIGKLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDHSRYETLIGRLGLRR 89

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BLAST of mRNA_L-digitata_M_contig101771.2.1 vs. uniprot
Match: A0A2D8G572_9PROT (30S ribosomal protein S15 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G572_9PROT)

HSP 1 Score: 153 bits (387), Expect = 6.460e-47
Identity = 79/89 (88.76%), Postives = 82/89 (92.13%), Query Frame = 1

Query:    1 MSITQERKSELIKEYSTGEYDTGSPEVQVAILSERIGNLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQSRYEKLIASLGLRR 267
            MSITQ+RK+ELI EYSTGEYDTGSPEVQVAILSERI NLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQ RY+  I  LGLRR
Sbjct:    1 MSITQQRKAELITEYSTGEYDTGSPEVQVAILSERIVNLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQLRYDAXIGRLGLRR 89

[Close]

BLAST of mRNA_L-digitata_M_contig101771.2.1 vs. uniprot
Match: A0A212K9Q7_9PROT (30S ribosomal protein S15 n=1 Tax=uncultured Alphaproteobacteria bacterium TaxID=91750 RepID=A0A212K9Q7_9PROT)

HSP 1 Score: 144 bits (363), Expect = 2.960e-43
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 1

Query:    1 MSITQERKSELIKEYSTGEYDTGSPEVQVAILSERIGNLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQSRYEKLIASLGLRR 267
            MSITQERK ELIKEY+T E DTGSPEVQVA+LSERI NLTEHLKEHKKDFHSRRGLL+MVGQRRRLLDY+K KD  RY+ LI  LGLRR
Sbjct:    1 MSITQERKQELIKEYATAEGDTGSPEVQVAVLSERIKNLTEHLKEHKKDFHSRRGLLIMVGQRRRLLDYVKAKDVKRYDSLIQRLGLRR 89

[Close]

BLAST of mRNA_L-digitata_M_contig101771.2.1 vs. uniprot
Match: A0A6J4FJN8_9PROT (30S ribosomal protein S15 n=1 Tax=Magnetospirillum sp. SS-4 TaxID=2681465 RepID=A0A6J4FJN8_9PROT)

HSP 1 Score: 143 bits (361), Expect = 5.970e-43
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 1

Query:    1 MSITQERKSELIKEYSTGEYDTGSPEVQVAILSERIGNLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQSRYEKLIASLGLRR 267
            MSIT ER  EL+KEYST E DTGSPEVQVAILSERI NLTEHLKEHKKDFHSRRGLL+MVGQRRR+LDY+K KDQ RYE LIA LGLR+
Sbjct:    1 MSITPERTQELVKEYSTKENDTGSPEVQVAILSERIRNLTEHLKEHKKDFHSRRGLLIMVGQRRRMLDYMKGKDQKRYEGLIARLGLRK 89

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BLAST of mRNA_L-digitata_M_contig101771.2.1 vs. uniprot
Match: UPI0004852CE9 (30S ribosomal protein S15 n=2 Tax=Rhodovibrio TaxID=85274 RepID=UPI0004852CE9)

HSP 1 Score: 143 bits (361), Expect = 5.970e-43
Identity = 71/89 (79.78%), Postives = 80/89 (89.89%), Query Frame = 1

Query:    1 MSITQERKSELIKEYSTGEYDTGSPEVQVAILSERIGNLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQSRYEKLIASLGLRR 267
            MSIT ERK EL+KEY   + DTGSPEVQ+AIL+ERI NLTEH+K+HKKDFHSRRGLL+MVGQRRRLLDYLKRKD+SRY+K I SLGLRR
Sbjct:    1 MSITTERKQELVKEYGANDNDTGSPEVQIAILTERIQNLTEHMKDHKKDFHSRRGLLIMVGQRRRLLDYLKRKDKSRYDKTIQSLGLRR 89

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BLAST of mRNA_L-digitata_M_contig101771.2.1 vs. uniprot
Match: A0A545TRS9_9PROT (30S ribosomal protein S15 n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545TRS9_9PROT)

HSP 1 Score: 142 bits (359), Expect = 1.200e-42
Identity = 74/89 (83.15%), Postives = 81/89 (91.01%), Query Frame = 1

Query:    1 MSITQERKSELIKEYSTGEYDTGSPEVQVAILSERIGNLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQSRYEKLIASLGLRR 267
            MSIT ERK+EL+KE++T E DTGSPEVQVAIL+ERI NLTEHLK HKKDFHSRRGLL+MVGQRRRLLDYLKRK+QSRYE LI  LGLRR
Sbjct:    1 MSITAERKNELVKEFATHEGDTGSPEVQVAILTERIINLTEHLKTHKKDFHSRRGLLIMVGQRRRLLDYLKRKEQSRYEALIQRLGLRR 89

[Close]

BLAST of mRNA_L-digitata_M_contig101771.2.1 vs. uniprot
Match: A0A1X7PTJ1_AZOLI (30S ribosomal protein S15 n=22 Tax=Azospirillum TaxID=191 RepID=A0A1X7PTJ1_AZOLI)

HSP 1 Score: 142 bits (358), Expect = 1.710e-42
Identity = 73/89 (82.02%), Postives = 78/89 (87.64%), Query Frame = 1

Query:    1 MSITQERKSELIKEYSTGEYDTGSPEVQVAILSERIGNLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQSRYEKLIASLGLRR 267
            MSIT ERK ELIKEYS G+ DTGSPEVQV+IL+ERI NLTEHLK HKKDFHSRRGLL+MVGQRRRLLDYLK+KD SRY  LI  LGLRR
Sbjct:    1 MSITPERKQELIKEYSRGQADTGSPEVQVSILTERISNLTEHLKSHKKDFHSRRGLLVMVGQRRRLLDYLKKKDNSRYATLIERLGLRR 89

[Close]

BLAST of mRNA_L-digitata_M_contig101771.2.1 vs. uniprot
Match: K2J5L5_9PROT (30S ribosomal protein S15 n=3 Tax=Oceanibaculum TaxID=659693 RepID=K2J5L5_9PROT)

HSP 1 Score: 142 bits (357), Expect = 2.430e-42
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 1

Query:    1 MSITQERKSELIKEYSTGEYDTGSPEVQVAILSERIGNLTEHLKEHKKDFHSRRGLLMMVGQRRRLLDYLKRKDQSRYEKLIASLGLRR 267
            MSIT ERK ELIKEY+ GE DTGSPEVQVAI+SERI NLT+HL +HKKD HSRRGLL++VGQRRRLLDYLKRKDQSRYE LI  LGLRR
Sbjct:    1 MSITAERKQELIKEYAQGEGDTGSPEVQVAIMSERIRNLTDHLNDHKKDHHSRRGLLVLVGQRRRLLDYLKRKDQSRYEGLIGRLGLRR 89

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig101771.2.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig101771.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2E5L7U9_9PROT	3.320e-49	91.01	30S ribosomal protein S15 n=1 Tax=Rhodospirillacea...	[more]
A0A2D8PRU8_9PROT	3.890e-48	92.13	30S ribosomal protein S15 n=3 Tax=Rhodospirillacea...	[more]
A0A2S6QAG1_9PROT	4.540e-47	88.76	30S ribosomal protein S15 n=1 Tax=Alphaproteobacte...	[more]
A0A2D8G572_9PROT	6.460e-47	88.76	30S ribosomal protein S15 n=1 Tax=Alphaproteobacte...	[more]
A0A212K9Q7_9PROT	2.960e-43	83.15	30S ribosomal protein S15 n=1 Tax=uncultured Alpha...	[more]
A0A6J4FJN8_9PROT	5.970e-43	83.15	30S ribosomal protein S15 n=1 Tax=Magnetospirillum...	[more]
UPI0004852CE9	5.970e-43	79.78	30S ribosomal protein S15 n=2 Tax=Rhodovibrio TaxI...	[more]
A0A545TRS9_9PROT	1.200e-42	83.15	30S ribosomal protein S15 n=1 Tax=Denitrobaculum t...	[more]
A0A1X7PTJ1_AZOLI	1.710e-42	82.02	30S ribosomal protein S15 n=22 Tax=Azospirillum Ta...	[more]
K2J5L5_9PROT	2.430e-42	82.02	30S ribosomal protein S15 n=3 Tax=Oceanibaculum Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig101771	contig	L-digitata_M_contig101771:503..772 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	1089552.KI911559_gene239
Preferred name	rpsO
PFAMs	Ribosomal_S15
Model size	270
Max annot lvl	204441\|Rhodospirillales
KEGG ko	ko:K02956
KEGG Pathway	ko03010,map03010
KEGG Module	M00178,M00179
Hectar predicted targeting category	other localisation
Exons	1
Evalue	9.79e-44
EggNOG OGs	COG0184@1\|root,COG0184@2\|Bacteria,1MZ2W@1224\|Proteobacteria,2UBRZ@28211\|Alphaproteobacteria,2JT89@204441\|Rhodospirillales
Description	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
Cds size	270
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406622.4375713-CDS-L-digitata_M_contig101771:502..772	1682406622.4375713-CDS-L-digitata_M_contig101771:502..772	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig101771 503..772 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig101771.2.1	prot_L-digitata_M_contig101771.2.1	Laminaria digitata LdigPH10_18mv male	polypeptide	L-digitata_M_contig101771 503..772 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-digitata_M_contig101771:503..772+
coding sequence from alignment at L-digitata_M_contig101771:503..772+

protein sequence of mRNA_L-digitata_M_contig101771.2.1

>prot_L-digitata_M_contig101771.2.1 ID=prot_L-digitata_M_contig101771.2.1|Name=mRNA_L-digitata_M_contig101771.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=90bp
MSITQERKSELIKEYSTGEYDTGSPEVQVAILSERIGNLTEHLKEHKKDF
HSRRGLLMMVGQRRRLLDYLKRKDQSRYEKLIASLGLRR*

mRNA from alignment at L-digitata_M_contig101771:503..772+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-digitata_M_contig101771.2.1 ID=mRNA_L-digitata_M_contig101771.2.1|Name=mRNA_L-digitata_M_contig101771.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=270bp|location=Sequence derived from alignment at L-digitata_M_contig101771:503..772+ (Laminaria digitata LdigPH10_18mv male)
ATGTCGATTACGCAAGAGCGCAAGTCAGAGCTCATCAAGGAATATTCCAC
CGGTGAATACGATACCGGCTCACCCGAGGTTCAGGTTGCCATCCTGTCGG
AGCGCATCGGCAACCTCACGGAACACCTCAAGGAACACAAAAAGGATTTC
CACTCGCGTCGTGGCCTGCTGATGATGGTTGGCCAGAGACGGCGCCTGCT
GGACTATCTCAAGCGCAAAGATCAATCGCGCTATGAGAAACTGATCGCAA
GCCTCGGACTCCGGCGCTGA

Coding sequence (CDS) from alignment at L-digitata_M_contig101771:503..772+

>mRNA_L-digitata_M_contig101771.2.1 ID=mRNA_L-digitata_M_contig101771.2.1|Name=mRNA_L-digitata_M_contig101771.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=270bp|location=Sequence derived from alignment at L-digitata_M_contig101771:503..772+ (Laminaria digitata LdigPH10_18mv male)
ATGTCGATTACGCAAGAGCGCAAGTCAGAGCTCATCAAGGAATATTCCAC
CGGTGAATACGATACCGGCTCACCCGAGGTTCAGGTTGCCATCCTGTCGG
AGCGCATCGGCAACCTCACGGAACACCTCAAGGAACACAAAAAGGATTTC
CACTCGCGTCGTGGCCTGCTGATGATGGTTGGCCAGAGACGGCGCCTGCT
GGACTATCTCAAGCGCAAAGATCAATCGCGCTATGAGAAACTGATCGCAA
GCCTCGGACTCCGGCGCTGA