mRNA_L-digitata_M_contig101699.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101699.2.1
Unique NamemRNA_L-digitata_M_contig101699.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101699.2.1 vs. uniprot
Match: A0A2D7FMJ9_9PROT (Sec-independent protein translocase protein TatB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FMJ9_9PROT)

HSP 1 Score: 164 bits (415), Expect = 9.650e-49
Identity = 97/171 (56.73%), Postives = 117/171 (68.42%), Query Frame = 1
Query:    1 MLDIGGWEFLLIAIMGIMIIGPKELPGAIRTVSMFVRRARELARDFQSGIEEVARDAELDKLTDDIKGIAGDGTGNLHDELQDAVDPDGNLKKAMDYDADWTDDDLIDYDDPEFADENRIAPPDQKSKTQTPTETAEAETAVPGNDPTPVVTGAETDTAEPAK--KPDGAS 507
            MLDIGGWEFLLIAI+GI+IIGPKELPGAIRT+S FV  AR L R+FQSG+EEVA DAE++KLTDD+K IAG GTG+  + +Q   DPD NL  A+D  + WTDD +IDY  PEFAD NRIA  DQ   T+   E  +  + +  N+       +  DT  P K  KPDG S
Sbjct:    1 MLDIGGWEFLLIAILGIIIIGPKELPGAIRTLSKFVAHARTLTREFQSGLEEVAHDAEINKLTDDLKEIAGAGTGDFPEGIQTVADPDENLMDALDLPSGWTDDQMIDYHTPEFADNNRIAVTDQTRNTEDVEEMDDPHSGL--NETVDSDPASTPDTHRPEKGLKPDGGS 169          
BLAST of mRNA_L-digitata_M_contig101699.2.1 vs. uniprot
Match: A0A2D8PQG3_9PROT (Sec-independent protein translocase protein TatB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PQG3_9PROT)

HSP 1 Score: 153 bits (387), Expect = 9.750e-45
Identity = 77/123 (62.60%), Postives = 101/123 (82.11%), Query Frame = 1
Query:    1 MLDIGGWEFLLIAIMGIMIIGPKELPGAIRTVSMFVRRARELARDFQSGIEEVARDAELDKLTDDIKGIAGD--GTGNLHDELQDAVDPDGNLKKAMDYDADWTDDDLIDYDDPEFADENRIA 363
            M DIGGWEFLLIAI+GI++IGPKELPGAIRTV  FVRRA+ELAR+FQSG+EEVAR+ ELDK+ +DI+ IA     T  +  E++D++DPDG+++ AM + + W+DDDL+DYD P F DEN+I+
Sbjct:    1 MFDIGGWEFLLIAILGIIVIGPKELPGAIRTVMSFVRRAKELAREFQSGLEEVARETELDKVGEDIRNIADPRAATEGIRKEIEDSLDPDGDMRDAMKFHSGWSDDDLLDYDSPVFDDENKIS 123          
BLAST of mRNA_L-digitata_M_contig101699.2.1 vs. uniprot
Match: A0A3D2BVA8_9PROT (Sec-independent protein translocase protein TatB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BVA8_9PROT)

HSP 1 Score: 149 bits (376), Expect = 3.770e-43
Identity = 78/122 (63.93%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    1 MLDIGGWEFLLIAIMGIMIIGPKELPGAIRTVSMFVRRARELARDFQSGIEEVARDAELDKLTDDIKGIAGDGTGNLHDELQDAVDPDGNLKKAMDYDADWTDDDLIDYDDPEFADENRIAP 366
            M DIGGWEFLLIAI+GI+IIGPKELPGAIR VSMFVRRARE+A++FQSG+EEVA++AEL+KL + +K  A D    +  E++D+VDPDGN+K A+++D + T+DDL+ YDDPE   +N IAP
Sbjct:    1 MFDIGGWEFLLIAILGIIIIGPKELPGAIRAVSMFVRRAREMAQEFQSGLEEVAQEAELNKLAETVK-TAVDPMERVRREIKDSVDPDGNIKDAINFDNELTNDDLVYYDDPELTKDNEIAP 121          
BLAST of mRNA_L-digitata_M_contig101699.2.1 vs. uniprot
Match: A0A520NN81_9PROT (Twin-arginine translocase subunit TatB n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A520NN81_9PROT)

HSP 1 Score: 145 bits (366), Expect = 1.240e-41
Identity = 74/121 (61.16%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 MLDIGGWEFLLIAIMGIMIIGPKELPGAIRTVSMFVRRARELARDFQSGIEEVARDAELDKLTDDIKGIAGDGTGNLHDELQDAVDPDGNLKKAMDYDADWTDDDLIDYDDPEFADENRIA 363
            M DIGGWEFLLIAI+GI+IIGPKELPGAIR VS+FVRRARE+A++FQSG+EEVA +A++ + ++ +K  A D   ++  E+ D+VDPDGN+K AM++D +WTD+DL++YDDPEFA+   I+
Sbjct:    1 MFDIGGWEFLLIAILGIIIIGPKELPGAIRAVSIFVRRAREMAQEFQSGLEEVAHEAKISEASETVK-TAVDPMESVRREIIDSVDPDGNIKDAMNFDNNWTDEDLVNYDDPEFAESISIS 120          
BLAST of mRNA_L-digitata_M_contig101699.2.1 vs. uniprot
Match: A0A2E6GMY7_9PROT (Sec-independent protein translocase protein TatB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GMY7_9PROT)

HSP 1 Score: 107 bits (267), Expect = 1.340e-26
Identity = 50/101 (49.50%), Postives = 78/101 (77.23%), Query Frame = 1
Query:    1 MLDIGGWEFLLIAIMGIMIIGPKELPGAIRTVSMFVRRARELARDFQSGIEEVARDAELDKLTDDIK-----GIAGDGTGNLHDELQDAVDPDGNLKKAMD 288
            M DIGGWEFL+I ++ I++IGPK+LPGAIR+V+ ++R+ARELAR+FQSGI+++A++ +L+K+TD++K     G  GD    +HD++ + +DP G +  A D
Sbjct:    1 MFDIGGWEFLIIIVVAIVVIGPKDLPGAIRSVTGWIRKARELAREFQSGIDDLAQEVDLEKITDEVKEGVGLGDPGDVGNTIHDQISNTLDPSGEVADAFD 101          
BLAST of mRNA_L-digitata_M_contig101699.2.1 vs. uniprot
Match: A0A2E7QWW6_9PROT (Twin-arginine translocase subunit TatB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QWW6_9PROT)

HSP 1 Score: 103 bits (257), Expect = 3.430e-25
Identity = 50/107 (46.73%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 MLDIGGWEFLLIAIMGIMIIGPKELPGAIRTVSMFVRRARELARDFQSGIEEVARDAELDKLTDDIKGIAG-DGTGNLHDELQDAVDPDGNLKKAMDYDADWTDDDL 318
            M DIGGWEFL+I ++ I+IIGPKELPG IR+V+ +VRRARELAR+FQSGI+++A++ E++K+ ++ +   G +G  N+ +++++++DP G L ++ +   +  +DDL
Sbjct:    1 MFDIGGWEFLIIVVVAILIIGPKELPGMIRSVAAWVRRARELAREFQSGIDDLAQEVEIEKIGEEFRHEIGIEGADNIGNKIRESIDPSGELLQSYESTKETIEDDL 107          
BLAST of mRNA_L-digitata_M_contig101699.2.1 vs. uniprot
Match: A0A6N7FAW0_9PROT (Sec-independent protein translocase protein TatB n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FAW0_9PROT)

HSP 1 Score: 102 bits (254), Expect = 2.000e-24
Identity = 50/101 (49.50%), Postives = 76/101 (75.25%), Query Frame = 1
Query:    1 MLDIGGWEFLLIAIMGIMIIGPKELPGAIRTVSMFVRRARELARDFQSGIEEVARDAELDKLTDDIK------GIAGDGTGNLHDELQDAVDPDGNLKKAM 285
            M DIGGWEFL+I ++ I++IGPK+LPGAIR+V+ +VR+AR LARDFQSG++E+AR+ ELDK+  +I+      G+  DG  ++  ++++ VDPD  ++ A 
Sbjct:    1 MFDIGGWEFLVIVVLAIIVIGPKDLPGAIRSVTQWVRKARALARDFQSGLDEIARETELDKVEQEIRESVDADGLT-DGARSIRRDIENTVDPDNEIRGAF 100          
BLAST of mRNA_L-digitata_M_contig101699.2.1 vs. uniprot
Match: A0A2S6QBY1_9PROT (Sec-independent protein translocase protein TatB n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QBY1_9PROT)

HSP 1 Score: 100 bits (250), Expect = 4.080e-24
Identity = 56/128 (43.75%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    1 MLDIGGWEFLLIAIMGIMIIGPKELPGAIRTVSMFVRRARELARDFQSGIEEVARDAELDKLTDDIKGIAGDGTGNLHDELQDAVDPDGNLKKAMDYDADWTDDDLIDYDDPEFADENRIAPPDQKSK 384
            MLDIGGWEFLL+ ++GI+I  P++LP  I+T S  +RR R   R+FQSG+EEVAR+AE DK++D +K I G+  G++  E+ D +D + +L      + D  ++  +DYD   F +EN I  P+   K
Sbjct:    1 MLDIGGWEFLLVLVLGIIIFRPRDLPRVIQTWSGLMRRVRHNVREFQSGLEEVAREAEFDKVSDSVKTI-GEPIGSVGKEIMDVLDREDDLTDLGRLNKDSAEEHFVDYDVSNFIEENEIRVPENLKK 127          
BLAST of mRNA_L-digitata_M_contig101699.2.1 vs. uniprot
Match: A0A2A4TXF8_9PROT (Sec-independent protein translocase protein TatB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2A4TXF8_9PROT)

HSP 1 Score: 94.4 bits (233), Expect = 4.180e-21
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 MLDIGGWEFLLIAIMGIMIIGPKELPGAIRTVSMFVRRARELARDFQSGIEEVARDAELDKLTDDIKGIAGDGTGNLHDELQDAVDPDGNLKKAM 285
            M DIG  E  ++AI+ ++++GPK+LP AIRT++ +VR+A+ + RDFQ+G+ E+ R+AELD    DIK     GT +LH ++ DAVDPDG L K M
Sbjct:    1 MFDIGWQELFIVAILALIVVGPKDLPQAIRTITTWVRKAKMMTRDFQAGVNEMVREAELD----DIKDTLTSGTTDLHKKISDAVDPDGELFKGM 91          
BLAST of mRNA_L-digitata_M_contig101699.2.1 vs. uniprot
Match: A0A2S6TI10_9PROT (Sec-independent protein translocase protein TatB n=1 Tax=Alphaproteobacteria bacterium MarineAlpha3_Bin3 TaxID=2013069 RepID=A0A2S6TI10_9PROT)

HSP 1 Score: 93.2 bits (230), Expect = 4.190e-21
Identity = 54/121 (44.63%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 MLDIGGWEFLLIAIMGIMIIGPKELPGAIRTVSMFVRRARELARDFQSGIEEVARDAELDKLTDDIKGIAGDGTGNLHDELQDAVDPDGNLKKAMDYDADWTD------DDLIDYDDPEFA 345
            M DIG  E  ++A++ I++IGPK+LPGAIRT++ ++R+AR +ARDFQ G++EV R+A+LD L    K +   G  ++  +++DAVDP G + K MD D D  D      DDL    DP+ A
Sbjct:    1 MFDIGWQELFILAVLAIIVIGPKDLPGAIRTITKWIRKARSMARDFQDGLDEVVREADLDDLK---KELDTPGGLDIAKKIEDAVDPTGEITKDMDLDKDLHDEMSGAVDDLKKITDPDSA 118          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101699.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FMJ9_9PROT9.650e-4956.73Sec-independent protein translocase protein TatB n... [more]
A0A2D8PQG3_9PROT9.750e-4562.60Sec-independent protein translocase protein TatB n... [more]
A0A3D2BVA8_9PROT3.770e-4363.93Sec-independent protein translocase protein TatB n... [more]
A0A520NN81_9PROT1.240e-4161.16Twin-arginine translocase subunit TatB n=2 Tax=Pro... [more]
A0A2E6GMY7_9PROT1.340e-2649.50Sec-independent protein translocase protein TatB n... [more]
A0A2E7QWW6_9PROT3.430e-2546.73Twin-arginine translocase subunit TatB n=1 Tax=Rho... [more]
A0A6N7FAW0_9PROT2.000e-2449.50Sec-independent protein translocase protein TatB n... [more]
A0A2S6QBY1_9PROT4.080e-2443.75Sec-independent protein translocase protein TatB n... [more]
A0A2A4TXF8_9PROT4.180e-2149.47Sec-independent protein translocase protein TatB n... [more]
A0A2S6TI10_9PROT4.190e-2144.63Sec-independent protein translocase protein TatB n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101699contigL-digitata_M_contig101699:365..874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog331869.BAL199_25124
Preferred nametatB
PFAMsMttA_Hcf106
Model size510
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03117
KEGG TC2.A.64
KEGG Pathwayko03060,ko03070,map03060,map03070
KEGG ModuleM00336
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215
Exons1
Evalue2.28e-17
EggNOG OGsCOG1826@1|root,COG1826@2|Bacteria,1N73F@1224|Proteobacteria,2UF4Z@28211|Alphaproteobacteria,4BR34@82117|unclassified Alphaproteobacteria
DescriptionPart of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation
Cds size510
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406621.8822196-CDS-L-digitata_M_contig101699:364..8741682406621.8822196-CDS-L-digitata_M_contig101699:364..874Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101699 365..874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101699.2.1prot_L-digitata_M_contig101699.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101699 365..874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101699.2.1

>prot_L-digitata_M_contig101699.2.1 ID=prot_L-digitata_M_contig101699.2.1|Name=mRNA_L-digitata_M_contig101699.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=170bp
MLDIGGWEFLLIAIMGIMIIGPKELPGAIRTVSMFVRRARELARDFQSGI
EEVARDAELDKLTDDIKGIAGDGTGNLHDELQDAVDPDGNLKKAMDYDAD
WTDDDLIDYDDPEFADENRIAPPDQKSKTQTPTETAEAETAVPGNDPTPV
VTGAETDTAEPAKKPDGAS*
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mRNA from alignment at L-digitata_M_contig101699:365..874+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101699.2.1 ID=mRNA_L-digitata_M_contig101699.2.1|Name=mRNA_L-digitata_M_contig101699.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=510bp|location=Sequence derived from alignment at L-digitata_M_contig101699:365..874+ (Laminaria digitata LdigPH10_18mv male)
ATGCTGGACATCGGCGGATGGGAATTCCTCCTGATAGCCATTATGGGGAT CATGATCATTGGTCCCAAGGAACTTCCCGGCGCTATCCGGACGGTAAGTA TGTTCGTGCGCCGTGCCCGGGAACTCGCCAGAGACTTCCAGTCCGGTATT GAGGAAGTCGCGCGGGACGCTGAACTCGATAAACTTACCGATGACATAAA AGGCATTGCCGGCGATGGTACCGGCAATCTGCATGACGAATTGCAGGATG CGGTCGATCCGGATGGAAATCTGAAAAAGGCAATGGATTACGACGCCGAC TGGACGGATGACGATCTGATCGATTACGACGATCCTGAATTCGCCGATGA GAACCGTATCGCCCCCCCCGACCAGAAAAGCAAAACGCAGACCCCGACCG AAACTGCCGAGGCGGAGACCGCTGTTCCCGGCAACGATCCAACACCGGTC GTGACCGGGGCTGAAACCGATACGGCCGAGCCCGCCAAGAAGCCGGACGG GGCATCATGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101699:365..874+

>mRNA_L-digitata_M_contig101699.2.1 ID=mRNA_L-digitata_M_contig101699.2.1|Name=mRNA_L-digitata_M_contig101699.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=510bp|location=Sequence derived from alignment at L-digitata_M_contig101699:365..874+ (Laminaria digitata LdigPH10_18mv male)
ATGCTGGACATCGGCGGATGGGAATTCCTCCTGATAGCCATTATGGGGAT
CATGATCATTGGTCCCAAGGAACTTCCCGGCGCTATCCGGACGGTAAGTA
TGTTCGTGCGCCGTGCCCGGGAACTCGCCAGAGACTTCCAGTCCGGTATT
GAGGAAGTCGCGCGGGACGCTGAACTCGATAAACTTACCGATGACATAAA
AGGCATTGCCGGCGATGGTACCGGCAATCTGCATGACGAATTGCAGGATG
CGGTCGATCCGGATGGAAATCTGAAAAAGGCAATGGATTACGACGCCGAC
TGGACGGATGACGATCTGATCGATTACGACGATCCTGAATTCGCCGATGA
GAACCGTATCGCCCCCCCCGACCAGAAAAGCAAAACGCAGACCCCGACCG
AAACTGCCGAGGCGGAGACCGCTGTTCCCGGCAACGATCCAACACCGGTC
GTGACCGGGGCTGAAACCGATACGGCCGAGCCCGCCAAGAAGCCGGACGG
GGCATCATGA
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