mRNA_L-digitata_M_contig10154.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10154.3.1
Unique NamemRNA_L-digitata_M_contig10154.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig10154.3.1 vs. uniprot
Match: D7FUP7_ECTSI (DNA topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP7_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 8.970e-25
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:   16 QVHANCGGEEFTATGLMVTERNWLVIYDPFERWTGRTIPEFFQGQEFVPSVLMV 177
            +V ANCGGE+FTATGLMVTERNWL +Y+PFERWTGR IPEFFQGQEFVPSVL++
Sbjct:  239 KVLANCGGEDFTATGLMVTERNWLDVYEPFERWTGRNIPEFFQGQEFVPSVLVM 292
[Close]
BLAST of mRNA_L-digitata_M_contig10154.3.1 vs. uniprot
Match: A0A8H5BSQ3_9AGAR (DNA topoisomerase n=1 Tax=Psilocybe cf. subviscida TaxID=2480587 RepID=A0A8H5BSQ3_9AGAR)

HSP 1 Score: 77.0 bits (188), Expect = 4.970e-15
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 SESWRQ-VHANCGGEEFTATGLMVTERNWLVIYDPFERWTGRTIPEFFQGQEFVPSVLMVR 180
            +E W+  V   CGGEEF+ATGL+V ERN+LV+Y  +++WTG T+P+F +GQEF P+V  VR
Sbjct:  413 AEGWQTTVEVVCGGEEFSATGLVVKERNYLVVY-VYDKWTGHTVPDFVEGQEFAPTVCEVR 472
[Close]
BLAST of mRNA_L-digitata_M_contig10154.3.1 vs. uniprot
Match: A0A835YM61_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM61_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.010e-14
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   37 GEEFTATGLMVTERNWLVIYDPFERWTGRTIPEFFQGQEFVPSVLMV 177
            GEEF+A+GLM+TERNWL IY P+ERW+ + IP F  GQEFVP+ LM+
Sbjct:  262 GEEFSASGLMITERNWLEIYHPWERWSDKAIPTFTVGQEFVPTSLML 308
[Close]
BLAST of mRNA_L-digitata_M_contig10154.3.1 vs. uniprot
Match: A0A067Q4C2_9AGAM (DNA topoisomerase n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067Q4C2_9AGAM)

HSP 1 Score: 73.9 bits (180), Expect = 6.030e-14
Identity = 30/52 (57.69%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   13 RQVHANCGGEEFTATGLMVTERNWLVIYDPFERWTGRTIPEFFQGQEFVPSV 168
            R V A CGGEEF+ATGL+V ERN+L++Y P+++W+ + +PEF +GQEF+P+V
Sbjct:  425 RTVDAECGGEEFSATGLVVLERNYLLVY-PYDKWSDKELPEFTEGQEFMPTV 475
[Close]
BLAST of mRNA_L-digitata_M_contig10154.3.1 vs. uniprot
Match: A0A0C9XCQ7_9AGAR (DNA topoisomerase n=1 Tax=Laccaria amethystina LaAM-08-1 TaxID=1095629 RepID=A0A0C9XCQ7_9AGAR)

HSP 1 Score: 71.6 bits (174), Expect = 3.930e-13
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:   19 VHANCGGEEFTATGLMVTERNWLVIYDPFERWTGRTIPEFFQGQEFVPSVLMVR 180
            V   CGGEEFTATGL+V +RN+L++Y P+++W G T+P F +G+EF PSV  +R
Sbjct:  420 VEVVCGGEEFTATGLIVLQRNYLLVY-PYDKWIGHTVPNFQEGEEFDPSVCELR 472
[Close]
BLAST of mRNA_L-digitata_M_contig10154.3.1 vs. uniprot
Match: A0A2A9NYR8_9AGAR (DNA topoisomerase n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NYR8_9AGAR)

HSP 1 Score: 70.1 bits (170), Expect = 1.370e-12
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   19 VHANCGGEEFTATGLMVTERNWLVIYDPFERWTGRTIPEFFQGQEFVPSVLMVR 180
            V   CGGEEF ATGL+V E+N+L++Y P+++W+G  +PEF +G+EF+PSV  +R
Sbjct:  423 VDVVCGGEEFHATGLVVLEKNYLLVY-PYDKWSGHELPEFEEGEEFMPSVCELR 475
[Close]
BLAST of mRNA_L-digitata_M_contig10154.3.1 vs. uniprot
Match: UPI000444A043 (prokaryotic type I DNA topoisomerase n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000444A043)

HSP 1 Score: 68.9 bits (167), Expect = 3.470e-12
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:   19 VHANCGGEEFTATGLMVTERNWLVIYDPFERWTGRTIPEFFQGQEFVPSVLMVR 180
            V   CGGEEF ATGL++ ERN+L +Y P+E+W+G+ +P+F +G EF+PSV  +R
Sbjct:  428 VDVLCGGEEFYATGLIILERNFLNVY-PYEKWSGKELPDFEEGDEFMPSVCELR 480
[Close]
BLAST of mRNA_L-digitata_M_contig10154.3.1 vs. uniprot
Match: A0A8H6TBL9_9AGAR (DNA topoisomerase n=1 Tax=Mycena indigotica TaxID=2126181 RepID=A0A8H6TBL9_9AGAR)

HSP 1 Score: 68.9 bits (167), Expect = 3.490e-12
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:   19 VHANCGGEEFTATGLMVTERNWLVIYDPFERWTGRTIPEFFQGQEFVPSVLMVR 180
            V   CGGEEF ATGL+V ++N+L++Y  +E+WTG  +P+F +G+EF PSVL +R
Sbjct:  433 VEVICGGEEFFATGLVVHQKNYLLVYT-YEKWTGNQVPDFAEGEEFQPSVLELR 485
[Close]
BLAST of mRNA_L-digitata_M_contig10154.3.1 vs. uniprot
Match: A0A165QLH3_9AGAM (DNA topoisomerase n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165QLH3_9AGAM)

HSP 1 Score: 68.9 bits (167), Expect = 3.490e-12
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   19 VHANCGGEEFTATGLMVTERNWLVIYDPFERWTGRTIPEFFQGQEFVPSVLMVR 180
            V   CGGEEF+ATGL+V ERN+L +Y P+++W+   IP+F +GQE +PSV  +R
Sbjct:  428 VEVTCGGEEFSATGLIVLERNYLEVY-PYDKWSSMEIPDFTEGQEIMPSVCEMR 480
[Close]
BLAST of mRNA_L-digitata_M_contig10154.3.1 vs. uniprot
Match: A0A8H8CPJ7_PSICU (DNA topoisomerase n=1 Tax=Psilocybe cubensis TaxID=181762 RepID=A0A8H8CPJ7_PSICU)

HSP 1 Score: 68.9 bits (167), Expect = 3.490e-12
Identity = 29/61 (47.54%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 SESWRQ-VHANCGGEEFTATGLMVTERNWLVIYDPFERWTGRTIPEFFQGQEFVPSVLMVR 180
            +E W+  V   CGGE+F+ATGL+V ERN+L +Y  +++WTG  +P+F +G+EF P+V  +R
Sbjct:  416 AEGWQTTVEVTCGGEDFSATGLVVKERNYLEVY-VYDKWTGHHVPDFREGEEFQPTVCEIR 475
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10154.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP7_ECTSI8.970e-2583.33DNA topoisomerase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A8H5BSQ3_9AGAR4.970e-1555.74DNA topoisomerase n=1 Tax=Psilocybe cf. subviscida... [more]
A0A835YM61_9STRA6.010e-1465.96DNA topoisomerase (Fragment) n=1 Tax=Tribonema min... [more]
A0A067Q4C2_9AGAM6.030e-1457.69DNA topoisomerase n=1 Tax=Jaapia argillacea MUCL 3... [more]
A0A0C9XCQ7_9AGAR3.930e-1355.56DNA topoisomerase n=1 Tax=Laccaria amethystina LaA... [more]
A0A2A9NYR8_9AGAR1.370e-1253.70DNA topoisomerase n=1 Tax=Amanita thiersii Skay404... [more]
UPI000444A0433.470e-1253.70prokaryotic type I DNA topoisomerase n=1 Tax=Stere... [more]
A0A8H6TBL9_9AGAR3.490e-1253.70DNA topoisomerase n=1 Tax=Mycena indigotica TaxID=... [more]
A0A165QLH3_9AGAM3.490e-1253.70DNA topoisomerase n=1 Tax=Neolentinus lepideus HHB... [more]
A0A8H8CPJ7_PSICU3.490e-1247.54DNA topoisomerase n=1 Tax=Psilocybe cubensis TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10154contigL-digitata_M_contig10154:9075..9254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FUP7
Preferred nameTOP3A
PFAMsTopoisom_bac,Toprim,zf-C4_Topoisom,zf-CCHC,zf-GRF
Model size180
Max annot lvl2759|Eukaryota
KEGG koko:K03165
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00414
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000278,GO:0000280,GO:0000712,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006265,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016604,GO:0016605,GO:0016853,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045132,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1903046
Exons1
Evalue1.47e-25
EggNOG OGsCOG0550@1|root,KOG1956@2759|Eukaryota
EC5.99.1.2
DescriptionDNA topoisomerase type I activity
Cds size180
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406620.113033-CDS-L-digitata_M_contig10154:9074..92541682406620.113033-CDS-L-digitata_M_contig10154:9074..9254Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10154 9075..9254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10154.3.1prot_L-digitata_M_contig10154.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10154 9075..9254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10154.3.1

>prot_L-digitata_M_contig10154.3.1 ID=prot_L-digitata_M_contig10154.3.1|Name=mRNA_L-digitata_M_contig10154.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=60bp
SESWRQVHANCGGEEFTATGLMVTERNWLVIYDPFERWTGRTIPEFFQGQ
EFVPSVLMVR
back to top

mRNA from alignment at L-digitata_M_contig10154:9075..9254+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10154.3.1 ID=mRNA_L-digitata_M_contig10154.3.1|Name=mRNA_L-digitata_M_contig10154.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=180bp|location=Sequence derived from alignment at L-digitata_M_contig10154:9075..9254+ (Laminaria digitata LdigPH10_18mv male)
TCCGAATCTTGGAGACAGGTGCATGCTAACTGCGGCGGGGAAGAGTTCAC
CGCAACGGGTCTCATGGTAACCGAGCGTAACTGGCTCGTCATCTACGATC
CGTTCGAAAGATGGACAGGCCGAACCATCCCAGAGTTCTTTCAGGGCCAG
GAGTTCGTTCCCAGCGTTTTGATGGTGAGA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig10154:9075..9254+

>mRNA_L-digitata_M_contig10154.3.1 ID=mRNA_L-digitata_M_contig10154.3.1|Name=mRNA_L-digitata_M_contig10154.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=180bp|location=Sequence derived from alignment at L-digitata_M_contig10154:9075..9254+ (Laminaria digitata LdigPH10_18mv male)
TCCGAATCTTGGAGACAGGTGCATGCTAACTGCGGCGGGGAAGAGTTCAC
CGCAACGGGTCTCATGGTAACCGAGCGTAACTGGCTCGTCATCTACGATC
CGTTCGAAAGATGGACAGGCCGAACCATCCCAGAGTTCTTTCAGGGCCAG
GAGTTCGTTCCCAGCGTTTTGATGGTGAGA
back to top