mRNA_L-digitata_M_contig10154.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10154.2.1
Unique NamemRNA_L-digitata_M_contig10154.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10154.2.1 vs. uniprot
Match: D7FSU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSU1_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 7.460e-61
Identity = 110/164 (67.07%), Postives = 128/164 (78.05%), Query Frame = 1 
Query:   19 RGGILEQRMNHVPTRVTVDFGNSPLVHQHLSLLTRGEAPSVTPIRLKVTREARRTLRPFQEIGLRLAEDKTVRSDAWRAAQAVRMREQRPATADILERVEKRREALLRQHASSKRETRREIVRMRSDAAEDRCIIQAEAAGLFSKGDVHEFSNFLARERGKKQR 510
            RGGI E R+N+V TR  +DFGNSP V  HL +LT G   SVTPIRL+VT EA RTLRPFQE  LRLA D+ +RS+ WRAAQAVR+R +RPAT DIL R+++RRE L+RQH SSKRETR+EI RMR DAAEDR  I+ EAA L SKGDVHEFSNFL + + KK R
Sbjct:  286 RGGIPEHRLNYVATRSAIDFGNSPFVKHHLRVLTGGGKTSVTPIRLQVTGEATRTLRPFQEQSLRLANDRLLRSNTWRAAQAVRVRNERPATVDILTRIDQRREKLMRQHISSKRETRQEISRMRIDAAEDRSSIETEAADLLSKGDVHEFSNFLVKHQAKKYR 449
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10154.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSU1_ECTSI7.460e-6167.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10154contigL-digitata_M_contig10154:1028..7321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size557
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionFAM227 Protein
Ec32 orthologEc-19_001760.1
Cds size555
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406620.0683267-CDS-L-digitata_M_contig10154:1029..11711682406620.0683267-CDS-L-digitata_M_contig10154:1029..1171Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10154 1030..1171 -
1682406620.0759475-CDS-L-digitata_M_contig10154:1900..20521682406620.0759475-CDS-L-digitata_M_contig10154:1900..2052Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10154 1901..2052 -
1682406620.0830564-CDS-L-digitata_M_contig10154:3712..38141682406620.0830564-CDS-L-digitata_M_contig10154:3712..3814Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10154 3713..3814 -
1682406620.0903625-CDS-L-digitata_M_contig10154:7162..73211682406620.0903625-CDS-L-digitata_M_contig10154:7162..7321Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10154 7163..7321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10154.2.1prot_L-digitata_M_contig10154.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10154 1030..7321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10154.2.1

>prot_L-digitata_M_contig10154.2.1 ID=prot_L-digitata_M_contig10154.2.1|Name=mRNA_L-digitata_M_contig10154.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=185bp
ARRGGGRGGILEQRMNHVPTRVTVDFGNSPLVHQHLSLLTRGEAPSVTPI
RLKVTREARRTLRPFQEIGLRLAEDKTVRSDAWRAAQAVRMREQRPATAD
ILERVEKRREALLRQHASSKRETRREIVRMRSDAAEDRCIIQAEAAGLFS
KGDVHEFSNFLARERGKKQRDNDRDQPAAGGGGGA
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mRNA from alignment at L-digitata_M_contig10154:1028..7321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10154.2.1 ID=mRNA_L-digitata_M_contig10154.2.1|Name=mRNA_L-digitata_M_contig10154.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=6294bp|location=Sequence derived from alignment at L-digitata_M_contig10154:1028..7321- (Laminaria digitata LdigPH10_18mv male)
GCGAGGAGGGGGGGGGGGAGGGGGGGCATTCTGGAGCAGCGCATGAACCA
CGTACCGACGAGAGTGACGGTAGACTTCGGCAACAGCCCGCTCGTGCACC
AGCACCTGAGCTTGCTCACCAGAGGGGAGGCTCCTTCCGTGACCCCTATC
AGGCTCAAGGTCAGTTGTTGTTGTTGTTGTTGTTGTTGTTCTCAAATTAA
CTCATCGCCACAATGCAGTCCGTGGCCACAGAGGCAGGTCCCATTAACTC
TGGAGTGGAAAGATTACCTCAGGAAGGAGTATAGGGCTTTGAGCGCTACG
GTAGGCAGGGATAGCGCCGAACTTTTCTGAGGCTCGTGCACCAGCACCTT
ACCTAGCTTGCTCACGAGAGAGGGGAGGCTGCTTCCGTGACCCCTATCGG
GCTCAAGGTCAGTGCAGGGCTTTGCGCGACCCCTCCTATCTTGCTGAAGG
TCAGTACAGGGGCTTGAGTGCTACGGCATAGGTAAGGGTAGCGCCGACAT
TTGTTTTTGTGAGGCTCGTGCGCCATACCATACCAGCACCTTAGCTTGCT
CACGAGACGGGACCAGCGCCCTAGCTCGCTCGCGAGAGGGGAGTTTGTGA
GGCTCGTGCACCAACCATACCAGCACCTTAGCTTGCTCACGAGAGGGGAG
GCTTCCTCCGTGACCCCCCCTTATCAGGCTCAAGGTGAGTTCGTACACGT
AAGGCTTTGAGTGCTACGGTAGGTAGCGCTACGATAGAGCTAGGACTTTT
CGGCGGAAAACGCTTCTGACGGACGGGGCTCCTTAACTGAGGAACTCTCA
ATCTACCCAATATCGTTGGAATGCCGTGTGCCTCGAAGGTGAAAACTAAT
AATCAATGTCTTGAATTTACTAACAGTATGAATGAAAAAAATTAACGCTA
ACCCAAGTCAATAACGAATTAATTTCATCCACCCCCTCCCCCCCCCCCCC
TGTAACGTTATGTTTACGTATCTCCTTTATTACTCGTGGTATGCCTAGTA
TACCTAGGCCATGGGATTGTTCAAATCTTGTTTTAGTTTTCGTCCGTTTT
TGTGTGAGATAGAGATCTGCTCGAGCAAGGAGCCTCAGAAAAAATTGGAG
TCGGTACTCGTAGCACTGATTTTTTCTGAGGCTCGTGCGTGCACCAGCGC
CTTAGTTTAGCTTGCTCACGAGAGGGGAGGCTGCTTGAGCGGCCCCTATC
GGGCTCAAGGTCGGAATAAGGCCTTGAGGGTGTTTGTTAGTTCCTATAGC
ACTACTACTCTAGACCACATAGTCAAGTGACTGTAGCGGGGGACCATAGT
AAATACTAGTAAATAGGACCAAATTTTGTTAGTAAAAGTAGGTAAATATA
TAGGTTTTTGTGTGTACCGTAGGTCCTATTTACTATGGTCCCCCGTAAAA
TAGTACCGTTGAGGTACCGTTGAGAGCGGTAGTGCTATACAACCAACAGT
GTTAAGATAGTACCCCCCATAAACCAGCCAGACGGACCCCAGGTTTGGGC
TCTTGAGCCATCCCACGGTACGATATGATAGGGGTTGCACTTTTTAGGTC
AACCATTTGACTATCCAATGGTTGAGCTCCTCAAGTGAGGAACTACCGGT
TCATATTATAATGGTTGATACTTGCATACGAAGTATTTGTTTTGGGAGAC
TAGCGCATAGAGAAGCTGGTCGGGTTGCGCGAAACGACATTGTCTTCGAA
GTCATGTTTCGGGTGAGACATTGAGCTCTCCCTCATGTGGAGGAGCTCAG
ACGAATTCTGCTGCACCTCTACCGTGGGATGAGGCTGTTGATCGGTAAGG
AGTCCAAGGTGCTGTTAGAACACGACTTGACTGCGAAAAATCGGCTTCAG
GCAGACGAAGTGCTGTTGATTTTTATGGTCCGTCTACAGTAGTACCGTCC
GTGTGTTTTTTTCTCATTGGGAATACTAACAGTCAGCTGTGACTGCTATT
AATAGCTCAGTGGGTAACCCCCTTTTGGGGCCCCGAGATGAACGATCATA
ATTTTGGTGCTATCAACAGTCTACGAGCAGCGTGAGCGCCCAGCAGCACA
GGTAGGGTCATGTTTTACCCCCCGTGTCGTACGACTCCTTGCATCGTAAC
TCGGACACCAATTTGTAACATCGACCAGTCACGCCGATTATTGCCGTACC
CGTCGCTCCTTAGTGCCAATTTCCCCCTCTGAATTCCCAATGACCCCTTT
AGCACCGCAGTCCCGTTTTGGGGACAAATTACTTGAAATTAGAGTGAGAG
CGTCCCCAAAACGGGAGTGCGGCCCTAAAAGGGGGTTAAGGTGTGTGTCT
AACAGACGGTGACGTAGGTGGCGAGACCAGAATGTGTAATAAACATACGG
AAAAAAAATTATGTTTTTGGTTGTCCGTCGTCGGTCCTGATTGTTGTGAC
CCCCCCGTAAAAGTGTGTGAAACGACAATACCACACGCCGGACAGATCAT
GATCTAGATCATCCAGATCATCTAGATCCTAACCTGCCACTATCAGATGC
TGTGCAGGATCTGATCTGCACGGTACAGATCTAACCGAAAAACCATGTCC
TGGACCATGCAGATTCTACGGCTCCCACCCCGCAACATGAGCTAAAGTAG
ATCGTACAGATCAGGAAATAGGTCTGCCCTGAATGATCTAGATCATCAAG
GAGGAATCGATGGTCTGTCCGACTCGTGGACAACACCCAAAGACTGGCGT
GGCAGCGGACGGCTATTCTTGTCAAGAACACAGGCAGCCCATGAAGCCGT
TTGTCGGTTTTTTTCTTTTAGTCGACTCTGCGGCATTTTTGTTGTTGTCG
TCTTTTTCCGCATGGTTTCAAGTTTCAAAAAAAGTAGTTTTAGTTTGCAC
CTGCAACGTTTTCCCGTGGTTTTCTTCTTTCGGGAATGCTTATGAGTGAT
CAACGCTCAAGCTCATGCTGCAAATTTGTCGGATGGCAAGGCACAATGAT
GATATCAGAAAATCGCTGCGTATGGTCGCCGATCTCTGTTGCGGGGGACC
ATAGTAAATACTAGTAAATAGGACCAAATATTGTTCGTAAAAATAGGGAA
ATACATAGATTTTTTGTGATTACCGTAGGTCCTATTTACTATGTATGGTC
CCCCGGAATAGCGGGGGAACAAGAAAAGAGAAAACTCGATAGTAGAACAG
GTGGCGACAGGGTGCATGTGCAGCACATGTACCCTGATGTATAGCGATAC
CCGCCTCTGCACGTTGCTTCATAGTTTGTTTACCAGGTTTCTAGCCGGAA
AGCAGGAAGAGAAAAGTTCAGTAGAACAGGTGGTGGCGACGGGGTGCATA
CGCAGTACACGCGCCGCCCTGCTATTTAGCGATACCCGCCGCTGCACGTT
GCTTTGTCATCAGGCTTCTTCCTCCGTACCGGTACATATTTTTTGTTTTC
AGGCTACCCGAAAGACCAGACGATGCAATAAACATGTACATAGAATCTGA
TAGTGACACCCGCCTGCACATTGCTTAGTCTAGTGTGTTGCGTTTGATAT
TCGTCAGGTTACGAGAGAGGCTAGGCGGACGCTTCGGCCTTTCCAAGAGA
TCGGACTAAGACTGGCCGAGGACAAGACAGTGCGCTCTGACGCTTGGCGC
GCAGCCCAGGTGTGACGTAACCCTTTTTAATACATACCGCACTGTACAGA
AACTCACAATACCTGAGTCTAATTGCAATTAAAGTTGTCTCCGAAAAAAA
GGGAGGTGGAGTCCTTCAAAAAGGAGTTTAATATGAACGCCTTTCCAGGG
GAACACCTTAAAAAAAAACTTTTTTCCCTTCCAGTGCTTGCAAAACAAAA
CAAACAAACTACCCCGCACTTCCAATTGCCGCCTGGTGGTAGTGCCCCCC
CCCCTTAAGAGTCGGCTGTTGGGTGAGGTACAGAGCCCCTCAAATGAGGC
GTCTCAGAAAAAATAGGTGCTACGAGCTGCTAGCGCTACCGTAGCACACT
ATTACCGGGGACCATAGTAAATACTTCAGTATGACCCACGATATACACGA
AAACCTACCAGGTATACAATACACTATTTTTGCTAAGCATATTTGGTCCT
ATTTACTATTAATAGTCCCCCGTAATACTCATAGTATACAAACAGTGCAG
AGCCTATGTGCTGTTCGCGTAGTGTGCCGCCATTTTGGTGGTCAATTGTT
TTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTGGGCTTCGACAAGTTTTTG
TTTTTGCTTCTTTTTCCCGTTTTTTTTTTTGCCCCCCTTCGAAAAACTGT
GTGATGATGCGCGATTTTGTATTAAATGCTTCACCAACTGACTGCTGGTT
CAATCACGTTTCTTCGATGTCCTTTGCCGTTGAGGTCTTACGAACAGACG
ATAACACGGCCAGCTGGGGAGTTTTTTTTGTCTGATCTGGTTGTTGTGAT
CGCATTATTCCGACACACCTTTTGTCGTTGAAGCCTGAACACCCGATTAA
AAGAAGCATCGCGCTAATAGTGGTGACGGATGCCCGCCCCCCCCGCCCCC
CCCGCCCCGACCCTACCTTTCGTCCATCCTGCAATCCTACGGACGGGAAA
ATCTACAAAATTGTTCCATGAGACGTTACCCACTTCGGGCAACTCACGAC
CTATATACAGTACTAGTAGATCTTCCATCTCCCTTAGCTCACCCCCTGCA
AACGTGTATATATACAAGAGCTGTTACTATCTTATATGAAAAGTAGCTCA
CACATATAGACAGCTCACGAGCTACTACATTAGTAGATCATCCGTCTCCC
ATAGCTCACCCCCAGCAAACATGTGTAGAAGAGCTACATAGTATCTAGTA
TTAAAAGCAACTCACACCCGGAACGCATGTGGTACATAGCTCATGTAGCT
CATATACGAAGTAGATATCGATTGATCTTCCCCGAAACGAGCCTAGCCCC
GAGCTATATACGGTGAGCTGCCTGGTACCAGTATGTATGTGCTATAAGTG
TGAAACGTTTCATTTATTGCAAGTGCCTCGTATTATGTGTCTTCGTGCGT
TTCGGTGTAATAACGTTCCAAGGCTGAGCGCACGATGGACCAGAGGCCAG
CGACAGCCGCAAAAACATTGTATATATGTACATACATATACGGTACGAGT
AGCTACTTGTTGTTTCTCGTATGATAATGATTGTTTCGTGCTCTTCTCTG
TATATATACGGTATCTACTCCGTAGTTCCTCGTATGATAATCATTTTTTC
GTGTTTTTCTGTATGGTAATATGATGATTATTTTTTCGTGCTTTTCGATG
TGGTAATAAATGGTCCAAGGCTGTGCGCATGAGGGAGCAGAGGCCGGCGA
CAGCGGATATCCTAGAGAGGGTGGAGAAGCGACGGGAAGCCCTCCTAAGG
CAGCACGCCTCCTCCAAGAGGGAAACCCGAAGAGAAATCGTCAGGATGCG
TTCGGACGCCGCTGAGGACAGGTGAACTATGTATTTTTAACCCCCCTTCA
TTCGGCGCTGTCATCCATATGCAAGACCGCCTCGCAAGCGATTATTATTA
ATAGTATTAATAAGATGCAGCTCGCCCTTCTTGCAACACGCCTCCTCCAA
AAGGGAAACCCGAAGGGAGATCGTCAGGATGCGTTCAGACGCCGCTGAGG
ACAGGTGAATTTTATTTTTTGGTTACTTTTTTAACCCCCTCTGAGTCCTT
TTTTTTTTTTTCTTTTTTTGGCGGTCGCCCTGGCTGGCGGTCGAGTTAAG
ATCATTTGTGCGGGGTGGAGTCAACATTTCTTGACCCCCCCCATTATCGC
TTTTCTTCTTTTTTTTTGGCTGTTGCCGCAACTTTCGGTCGAGTTGAGAT
CATTTATGCGGGGCGGAGAGAACGTTACGTTTACTCCGCACCAGGGCACT
CATCGAAACACGGTACCTTTTTGTGCGGGGTGGAGAACCTTTTTACCCCG
CACAAGGGAAAAAATGATCGTACGCATCACGCAGTGTGTGTGGTAGGGCA
CTCACGAGGCAGTTACATACTGTAGGTACCCCCCCATTTTGCTGTCTCTG
CAAGTGGCAACACCGGAAAACAAAATCAACCATTTTCCTGCTGTGACCTG
CACTGCATTGGATGGAACATATATACTGATTGATGATTGACTTGAAGAGC
AGCATAGAAAAACAAATATTCTAGCGCGCTTGCTCTTCGACCTTTTTTAG
GTGCATCATCCAAGCGGAGGCGGCGGGACTCTTCTCCAAGGGAGACGTGC
ACGAGTTTAGCAACTTTCTAGCGCGGGAGCGGGGCAAAAAGCAGAGGGAC
AACGACAGAGACCAGCCCGCTGCTGGCGGTGGTGGTGGCGCAAT
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Coding sequence (CDS) from alignment at L-digitata_M_contig10154:1028..7321-

>mRNA_L-digitata_M_contig10154.2.1 ID=mRNA_L-digitata_M_contig10154.2.1|Name=mRNA_L-digitata_M_contig10154.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=555bp|location=Sequence derived from alignment at L-digitata_M_contig10154:1028..7321- (Laminaria digitata LdigPH10_18mv male)
GCGAGGAGGGGGGGGGGGAGGGGGGGCATTCTGGAGCAGCGCATGAACCA
CGTACCGACGAGAGTGACGGTAGACTTCGGCAACAGCCCGCTCGTGCACC
AGCACCTGAGCTTGCTCACCAGAGGGGAGGCTCCTTCCGTGACCCCTATC
AGGCTCAAGGTTACGAGAGAGGCTAGGCGGACGCTTCGGCCTTTCCAAGA
GATCGGACTAAGACTGGCCGAGGACAAGACAGTGCGCTCTGACGCTTGGC
GCGCAGCCCAGGCTGTGCGCATGAGGGAGCAGAGGCCGGCGACAGCGGAT
ATCCTAGAGAGGGTGGAGAAGCGACGGGAAGCCCTCCTAAGGCAGCACGC
CTCCTCCAAGAGGGAAACCCGAAGAGAAATCGTCAGGATGCGTTCGGACG
CCGCTGAGGACAGGTGCATCATCCAAGCGGAGGCGGCGGGACTCTTCTCC
AAGGGAGACGTGCACGAGTTTAGCAACTTTCTAGCGCGGGAGCGGGGCAA
AAAGCAGAGGGACAACGACAGAGACCAGCCCGCTGCTGGCGGTGGTGGTG
GCGCA
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