mRNA_L-digitata_M_contig101516.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A222E2B0_9RHOB (Cysteine/O-acetylserine efflux protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E2B0_9RHOB) HSP 1 Score: 176 bits (445), Expect = 5.300e-54 Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 1
Query: 1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVAATTLL 315
PIG TKAQGNPP EGTL+SLVNPKAYAAMAAVFSGFTLVSGAPLGDAL KTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGR+INMAFAGALLIAVAATTLL
Sbjct: 93 PIGLTKAQGNPPHWTEGTLLSLVNPKAYAAMAAVFSGFTLVSGAPLGDALVKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRVINMAFAGALLIAVAATTLL 197
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A239C111_9RHOB (Threonine/homoserine/homoserine lactone efflux protein n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239C111_9RHOB) HSP 1 Score: 155 bits (393), Expect = 4.170e-46 Identity = 87/105 (82.86%), Postives = 93/105 (88.57%), Query Frame = 1
Query: 1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVAATTLL 315
PIG KAQG PPR EG L+SLVNPKAYAAMAA FSGFTLV+GAP+GDAL KTALLMLTILAVNLAWL AGSLLTR VR+PRAGRIIN+ FAGALL+AVAAT LL
Sbjct: 93 PIGLAKAQGQPPRWTEGALLSLVNPKAYAAMAAAFSGFTLVTGAPVGDALVKTALLMLTILAVNLAWLLAGSLLTRIVRNPRAGRIINLTFAGALLVAVAATALL 197
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A3K999_9RHOB (Uncharacterized protein n=2 Tax=Sagittula TaxID=58842 RepID=A3K999_9RHOB) HSP 1 Score: 103 bits (256), Expect = 2.060e-25 Identity = 64/105 (60.95%), Postives = 73/105 (69.52%), Query Frame = 1
Query: 1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVAATTLL 315
PIG + PPR EG L+S++NPKAYAAMAA+FSGFTL APL DAL KT L IL VN AW+ G+LLTR +PR R IN FA ALLI+VAATTLL
Sbjct: 93 PIGPADSGRRPPRWHEGALLSMMNPKAYAAMAALFSGFTL-RPAPLPDALTKTLLAFAVILTVNAAWMVIGTLLTRLAGNPRTARAINYGFAAALLISVAATTLL 196
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A2G9WQM0_9HYPH (Uncharacterized protein n=2 Tax=Pleomorphomonas TaxID=261933 RepID=A0A2G9WQM0_9HYPH) HSP 1 Score: 93.6 bits (231), Expect = 1.160e-21 Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 1
Query: 1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVAATTL 312
P+G +A G P + G ++SL NPKAY A+AAV S +TL+ G P+ D + K ALL++ I AVN+AWL AGSLL R V +PR GR++N+ FA L+++V A L
Sbjct: 93 PMGAAEAPGREPGLSAGVMLSLTNPKAYVAVAAVVSRYTLMPGRPVADEVLKGALLLVLIAAVNVAWLAAGSLLARAVTNPRVGRLVNLGFAALLVVSVLAAFL 196
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A5J6MZA9_9PROT (Threonine transporter RhtB n=1 Tax=Hypericibacter adhaerens TaxID=2602016 RepID=A0A5J6MZA9_9PROT) HSP 1 Score: 93.6 bits (231), Expect = 1.190e-21 Identity = 57/105 (54.29%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVAATTLL 315
P+ QG P A G L+SLVNPK YAAMAA+FSGF LV+ P DA K +L+L I VN+AWL G+ LTR R+P A R++N+AFA LL +VAAT LL
Sbjct: 93 PLTERSHQGRHPSFAAGLLLSLVNPKGYAAMAALFSGFVLVAAHPGADAAVKMLVLLLVIALVNIAWLFVGAALTRLFRNPVANRVVNLAFAILLLASVAATLLL 197
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A095WLM5_9HYPH (Uncharacterized protein n=2 Tax=Rhizobium TaxID=379 RepID=A0A095WLM5_9HYPH) HSP 1 Score: 92.0 bits (227), Expect = 4.710e-21 Identity = 55/99 (55.56%), Postives = 64/99 (64.65%), Query Frame = 1
Query: 1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAV 297
PIG A G P G +SLVNPKAYAAM A+FSGFTL P DA K A+L L I AVNLAWL AG+ LTR R P A RI+N+ FA LL+++
Sbjct: 93 PIGEETAAGRAPTFPGGVFLSLVNPKAYAAMGALFSGFTLAVADPATDAFFKIAVLTLVIAAVNLAWLSAGATLTRLFRDPLANRIVNIIFAALLLLSL 191
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A101JVT4_9HYPH (Uncharacterized protein n=1 Tax=Bosea sp. WAO TaxID=406341 RepID=A0A101JVT4_9HYPH) HSP 1 Score: 91.3 bits (225), Expect = 9.380e-21 Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 1
Query: 1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAV 297
P+ +G P A G +SLVNPK YAAMA++FSGF LV GA L DA AKTALL+ + AVN WL AG+ LTR R+ RA R IN+ FA LL+++
Sbjct: 93 PLVEDAGEGKAPSFAAGLTLSLVNPKGYAAMASLFSGFVLVRGAVLSDAAAKTALLLAIVTAVNAIWLLAGAALTRAFRNRRANRAINLVFAALLLVSL 191
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A1Y6CPJ9_9HYPH (Threonine/homoserine/homoserine lactone efflux protein n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6CPJ9_9HYPH) HSP 1 Score: 90.9 bits (224), Expect = 1.350e-20 Identity = 56/99 (56.57%), Postives = 64/99 (64.65%), Query Frame = 1
Query: 1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAV 297
P+ A P A G + LVNPKAYAAMAA+FSGF LV G P DALAK LL I+AVNLAWL AG+ LTR R PR R IN+ FA LL++V
Sbjct: 94 PLDDETASRRRPSFAGGVFLQLVNPKAYAAMAALFSGFVLVGGQPALDALAKIGLLAAIIVAVNLAWLNAGAALTRCFRDPRTNRAINLGFAVLLLVSV 192
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A346R029_9HYPH (LysE family translocator n=1 Tax=Breoghania sp. L-A4 TaxID=2304600 RepID=A0A346R029_9HYPH) HSP 1 Score: 90.1 bits (222), Expect = 2.630e-20 Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1
Query: 49 GTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVAATTLL 315
G VSLVNPKAYAAMAA+FSGF L+ P+ D + K +L L I+ VN+ WL AG+ +TR +RSPRA RI+N+ FA LL++V A+ LL
Sbjct: 109 GAFVSLVNPKAYAAMAALFSGFALIGAHPVWDVVLKIGVLALIIMLVNIVWLHAGAAMTRFLRSPRASRIVNVTFAVLLLVSVGASLLL 197
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A4R3E4R7_9HYPH (Threonine/homoserine/homoserine lactone efflux protein n=1 Tax=Bosea sp. BK604 TaxID=2512180 RepID=A0A4R3E4R7_9HYPH) HSP 1 Score: 89.4 bits (220), Expect = 5.240e-20 Identity = 54/100 (54.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query: 1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVA 300
P+ +G P A G L+SLVNPK YAAMAA+FSGF L+ GA DALAK +LM I AVNL WL G+ LTR R PR RI+N+ FA L+ +VA
Sbjct: 93 PLTDASERGARPSFAAGALLSLVNPKGYAAMAALFSGFVLLRGALASDALAKAGVLMAIIAAVNLLWLVTGAALTRFFREPRTNRIVNIVFAILLIASVA 192 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101516.1.1 >prot_L-digitata_M_contig101516.1.1 ID=prot_L-digitata_M_contig101516.1.1|Name=mRNA_L-digitata_M_contig101516.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=106bp PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALback to top mRNA from alignment at L-digitata_M_contig101516:5..322+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101516.1.1 ID=mRNA_L-digitata_M_contig101516.1.1|Name=mRNA_L-digitata_M_contig101516.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=318bp|location=Sequence derived from alignment at L-digitata_M_contig101516:5..322+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101516:5..322+ >mRNA_L-digitata_M_contig101516.1.1 ID=mRNA_L-digitata_M_contig101516.1.1|Name=mRNA_L-digitata_M_contig101516.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=318bp|location=Sequence derived from alignment at L-digitata_M_contig101516:5..322+ (Laminaria digitata LdigPH10_18mv male)back to top |