mRNA_L-digitata_M_contig101516.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101516.1.1
Unique NamemRNA_L-digitata_M_contig101516.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A222E2B0_9RHOB (Cysteine/O-acetylserine efflux protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E2B0_9RHOB)

HSP 1 Score: 176 bits (445), Expect = 5.300e-54
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 1
Query:    1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVAATTLL 315
            PIG TKAQGNPP   EGTL+SLVNPKAYAAMAAVFSGFTLVSGAPLGDAL KTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGR+INMAFAGALLIAVAATTLL
Sbjct:   93 PIGLTKAQGNPPHWTEGTLLSLVNPKAYAAMAAVFSGFTLVSGAPLGDALVKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRVINMAFAGALLIAVAATTLL 197          
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A239C111_9RHOB (Threonine/homoserine/homoserine lactone efflux protein n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239C111_9RHOB)

HSP 1 Score: 155 bits (393), Expect = 4.170e-46
Identity = 87/105 (82.86%), Postives = 93/105 (88.57%), Query Frame = 1
Query:    1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVAATTLL 315
            PIG  KAQG PPR  EG L+SLVNPKAYAAMAA FSGFTLV+GAP+GDAL KTALLMLTILAVNLAWL AGSLLTR VR+PRAGRIIN+ FAGALL+AVAAT LL
Sbjct:   93 PIGLAKAQGQPPRWTEGALLSLVNPKAYAAMAAAFSGFTLVTGAPVGDALVKTALLMLTILAVNLAWLLAGSLLTRIVRNPRAGRIINLTFAGALLVAVAATALL 197          
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A3K999_9RHOB (Uncharacterized protein n=2 Tax=Sagittula TaxID=58842 RepID=A3K999_9RHOB)

HSP 1 Score: 103 bits (256), Expect = 2.060e-25
Identity = 64/105 (60.95%), Postives = 73/105 (69.52%), Query Frame = 1
Query:    1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVAATTLL 315
            PIG   +   PPR  EG L+S++NPKAYAAMAA+FSGFTL   APL DAL KT L    IL VN AW+  G+LLTR   +PR  R IN  FA ALLI+VAATTLL
Sbjct:   93 PIGPADSGRRPPRWHEGALLSMMNPKAYAAMAALFSGFTL-RPAPLPDALTKTLLAFAVILTVNAAWMVIGTLLTRLAGNPRTARAINYGFAAALLISVAATTLL 196          
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A2G9WQM0_9HYPH (Uncharacterized protein n=2 Tax=Pleomorphomonas TaxID=261933 RepID=A0A2G9WQM0_9HYPH)

HSP 1 Score: 93.6 bits (231), Expect = 1.160e-21
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVAATTL 312
            P+G  +A G  P  + G ++SL NPKAY A+AAV S +TL+ G P+ D + K ALL++ I AVN+AWL AGSLL R V +PR GR++N+ FA  L+++V A  L
Sbjct:   93 PMGAAEAPGREPGLSAGVMLSLTNPKAYVAVAAVVSRYTLMPGRPVADEVLKGALLLVLIAAVNVAWLAAGSLLARAVTNPRVGRLVNLGFAALLVVSVLAAFL 196          
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A5J6MZA9_9PROT (Threonine transporter RhtB n=1 Tax=Hypericibacter adhaerens TaxID=2602016 RepID=A0A5J6MZA9_9PROT)

HSP 1 Score: 93.6 bits (231), Expect = 1.190e-21
Identity = 57/105 (54.29%), Postives = 70/105 (66.67%), Query Frame = 1
Query:    1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVAATTLL 315
            P+     QG  P  A G L+SLVNPK YAAMAA+FSGF LV+  P  DA  K  +L+L I  VN+AWL  G+ LTR  R+P A R++N+AFA  LL +VAAT LL
Sbjct:   93 PLTERSHQGRHPSFAAGLLLSLVNPKGYAAMAALFSGFVLVAAHPGADAAVKMLVLLLVIALVNIAWLFVGAALTRLFRNPVANRVVNLAFAILLLASVAATLLL 197          
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A095WLM5_9HYPH (Uncharacterized protein n=2 Tax=Rhizobium TaxID=379 RepID=A0A095WLM5_9HYPH)

HSP 1 Score: 92.0 bits (227), Expect = 4.710e-21
Identity = 55/99 (55.56%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAV 297
            PIG   A G  P    G  +SLVNPKAYAAM A+FSGFTL    P  DA  K A+L L I AVNLAWL AG+ LTR  R P A RI+N+ FA  LL+++
Sbjct:   93 PIGEETAAGRAPTFPGGVFLSLVNPKAYAAMGALFSGFTLAVADPATDAFFKIAVLTLVIAAVNLAWLSAGATLTRLFRDPLANRIVNIIFAALLLLSL 191          
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A101JVT4_9HYPH (Uncharacterized protein n=1 Tax=Bosea sp. WAO TaxID=406341 RepID=A0A101JVT4_9HYPH)

HSP 1 Score: 91.3 bits (225), Expect = 9.380e-21
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAV 297
            P+     +G  P  A G  +SLVNPK YAAMA++FSGF LV GA L DA AKTALL+  + AVN  WL AG+ LTR  R+ RA R IN+ FA  LL+++
Sbjct:   93 PLVEDAGEGKAPSFAAGLTLSLVNPKGYAAMASLFSGFVLVRGAVLSDAAAKTALLLAIVTAVNAIWLLAGAALTRAFRNRRANRAINLVFAALLLVSL 191          
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A1Y6CPJ9_9HYPH (Threonine/homoserine/homoserine lactone efflux protein n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6CPJ9_9HYPH)

HSP 1 Score: 90.9 bits (224), Expect = 1.350e-20
Identity = 56/99 (56.57%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAV 297
            P+    A    P  A G  + LVNPKAYAAMAA+FSGF LV G P  DALAK  LL   I+AVNLAWL AG+ LTR  R PR  R IN+ FA  LL++V
Sbjct:   94 PLDDETASRRRPSFAGGVFLQLVNPKAYAAMAALFSGFVLVGGQPALDALAKIGLLAAIIVAVNLAWLNAGAALTRCFRDPRTNRAINLGFAVLLLVSV 192          
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A346R029_9HYPH (LysE family translocator n=1 Tax=Breoghania sp. L-A4 TaxID=2304600 RepID=A0A346R029_9HYPH)

HSP 1 Score: 90.1 bits (222), Expect = 2.630e-20
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1
Query:   49 GTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVAATTLL 315
            G  VSLVNPKAYAAMAA+FSGF L+   P+ D + K  +L L I+ VN+ WL AG+ +TR +RSPRA RI+N+ FA  LL++V A+ LL
Sbjct:  109 GAFVSLVNPKAYAAMAALFSGFALIGAHPVWDVVLKIGVLALIIMLVNIVWLHAGAAMTRFLRSPRASRIVNVTFAVLLLVSVGASLLL 197          
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Match: A0A4R3E4R7_9HYPH (Threonine/homoserine/homoserine lactone efflux protein n=1 Tax=Bosea sp. BK604 TaxID=2512180 RepID=A0A4R3E4R7_9HYPH)

HSP 1 Score: 89.4 bits (220), Expect = 5.240e-20
Identity = 54/100 (54.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDALAKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVA 300
            P+     +G  P  A G L+SLVNPK YAAMAA+FSGF L+ GA   DALAK  +LM  I AVNL WL  G+ LTR  R PR  RI+N+ FA  L+ +VA
Sbjct:   93 PLTDASERGARPSFAAGALLSLVNPKGYAAMAALFSGFVLLRGALASDALAKAGVLMAIIAAVNLLWLVTGAALTRFFREPRTNRIVNIVFAILLIASVA 192          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101516.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E2B0_9RHOB5.300e-5493.33Cysteine/O-acetylserine efflux protein n=2 Tax=Ros... [more]
A0A239C111_9RHOB4.170e-4682.86Threonine/homoserine/homoserine lactone efflux pro... [more]
A3K999_9RHOB2.060e-2560.95Uncharacterized protein n=2 Tax=Sagittula TaxID=58... [more]
A0A2G9WQM0_9HYPH1.160e-2150.00Uncharacterized protein n=2 Tax=Pleomorphomonas Ta... [more]
A0A5J6MZA9_9PROT1.190e-2154.29Threonine transporter RhtB n=1 Tax=Hypericibacter ... [more]
A0A095WLM5_9HYPH4.710e-2155.56Uncharacterized protein n=2 Tax=Rhizobium TaxID=37... [more]
A0A101JVT4_9HYPH9.380e-2153.54Uncharacterized protein n=1 Tax=Bosea sp. WAO TaxI... [more]
A0A1Y6CPJ9_9HYPH1.350e-2056.57Threonine/homoserine/homoserine lactone efflux pro... [more]
A0A346R029_9HYPH2.630e-2056.18LysE family translocator n=1 Tax=Breoghania sp. L-... [more]
A0A4R3E4R7_9HYPH5.240e-2054.00Threonine/homoserine/homoserine lactone efflux pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101516contigL-digitata_M_contig101516:5..322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog388399.SSE37_15351
PFAMsLysE
Model size318
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.38e-26
EggNOG OGsCOG1280@1|root,COG1280@2|Bacteria,1RFU5@1224|Proteobacteria,2U689@28211|Alphaproteobacteria
Descriptionthreonine efflux protein
Cds size318
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406619.8773446-CDS-L-digitata_M_contig101516:4..3221682406619.8773446-CDS-L-digitata_M_contig101516:4..322Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101516 5..322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101516.1.1prot_L-digitata_M_contig101516.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101516 5..322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101516.1.1

>prot_L-digitata_M_contig101516.1.1 ID=prot_L-digitata_M_contig101516.1.1|Name=mRNA_L-digitata_M_contig101516.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=106bp
PIGRTKAQGNPPRGAEGTLVSLVNPKAYAAMAAVFSGFTLVSGAPLGDAL
AKTALLMLTILAVNLAWLCAGSLLTRTVRSPRAGRIINMAFAGALLIAVA
ATTLL*
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mRNA from alignment at L-digitata_M_contig101516:5..322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101516.1.1 ID=mRNA_L-digitata_M_contig101516.1.1|Name=mRNA_L-digitata_M_contig101516.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=318bp|location=Sequence derived from alignment at L-digitata_M_contig101516:5..322+ (Laminaria digitata LdigPH10_18mv male)
CCGATCGGGCGCACCAAGGCGCAGGGCAATCCTCCGCGCGGGGCCGAAGG CACGCTGGTGTCGCTGGTCAACCCCAAGGCCTACGCCGCCATGGCCGCCG TCTTTTCCGGCTTTACCCTTGTGTCCGGGGCACCACTTGGCGACGCGCTG GCAAAAACCGCCCTGCTGATGCTGACGATCCTTGCCGTCAATCTTGCATG GCTGTGTGCAGGCAGCCTGTTGACCCGCACCGTGCGCAGCCCGAGGGCCG GACGGATCATCAACATGGCCTTTGCCGGGGCCTTGCTGATTGCTGTCGCC GCCACAACCTTGCTGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101516:5..322+

>mRNA_L-digitata_M_contig101516.1.1 ID=mRNA_L-digitata_M_contig101516.1.1|Name=mRNA_L-digitata_M_contig101516.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=318bp|location=Sequence derived from alignment at L-digitata_M_contig101516:5..322+ (Laminaria digitata LdigPH10_18mv male)
CCGATCGGGCGCACCAAGGCGCAGGGCAATCCTCCGCGCGGGGCCGAAGG
CACGCTGGTGTCGCTGGTCAACCCCAAGGCCTACGCCGCCATGGCCGCCG
TCTTTTCCGGCTTTACCCTTGTGTCCGGGGCACCACTTGGCGACGCGCTG
GCAAAAACCGCCCTGCTGATGCTGACGATCCTTGCCGTCAATCTTGCATG
GCTGTGTGCAGGCAGCCTGTTGACCCGCACCGTGCGCAGCCCGAGGGCCG
GACGGATCATCAACATGGCCTTTGCCGGGGCCTTGCTGATTGCTGTCGCC
GCCACAACCTTGCTGTAG
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