mRNA_L-digitata_M_contig101362.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101362.1.1
Unique NamemRNA_L-digitata_M_contig101362.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101362.1.1 vs. uniprot
Match: A0A6L9ZQG5_9CYAN (WD40 repeat domain-containing protein n=1 Tax=Okeania sp. SIO3B5 TaxID=2607811 RepID=A0A6L9ZQG5_9CYAN)

HSP 1 Score: 65.9 bits (159), Expect = 2.010e-8
Identity = 26/59 (44.07%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   13 VWLDPIKVNLDIPGSSLLQAYKGHGDVIHAIDIDAEGQMAISASSDRTLKLWDIRTGAQ 189
            VWL P+K +L  PG SL++  +GH D++  + +  +G++ IS SSD+T+K+W I TGA+
Sbjct:  127 VWLYPLKTSLTTPGGSLIRILEGHSDMVRTLAVTPDGKLVISGSSDKTIKVWCIETGAE 185
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BLAST of mRNA_L-digitata_M_contig101362.1.1 vs. uniprot
Match: UPI001688C1F1 (tetratricopeptide repeat protein n=1 Tax=unclassified Planktothricoides TaxID=2621081 RepID=UPI001688C1F1)

HSP 1 Score: 66.2 bits (160), Expect = 2.270e-8
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:    1 KPEPVWLDPIKVNLDIPGSSLLQAYKGHGDVIHAIDIDAEGQMAISASSDRTLKLWDIRTGAQ 189
            K E  W  P+  NL  PG  L++   GH D ++A+ I  +G+ A+S SSD+TLKLWD+ TG++
Sbjct:  127 KQEKPWFRPLAANLTPPGGPLIRTLTGHSDSVNAVAITPDGKQAVSGSSDKTLKLWDLATGSE 189
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BLAST of mRNA_L-digitata_M_contig101362.1.1 vs. uniprot
Match: A0A6P0XNU5_9CYAN (Bulb-type lectin domain-containing protein (Fragment) n=1 Tax=Okeania sp. SIO2D1 TaxID=2607792 RepID=A0A6P0XNU5_9CYAN)

HSP 1 Score: 64.3 bits (155), Expect = 7.280e-8
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   13 VWLDPIKVNLDIPGSSLLQAYKGHGDVIHAIDIDAEGQMAISASSDRTLKLWDIRTGAQ 189
            VWL P+K +L  PG  L++  +GH D++  + +  +G++ IS SSD+T+K+W + TGA+
Sbjct:  136 VWLHPLKSSLTTPGGPLIRILEGHSDMVRTLAVTPDGKLVISGSSDKTIKVWSLETGAE 194
[Close]
BLAST of mRNA_L-digitata_M_contig101362.1.1 vs. uniprot
Match: UPI001686C527 (hypothetical protein n=1 Tax=Calothrix sp. FACHB-1219 TaxID=2692778 RepID=UPI001686C527)

HSP 1 Score: 63.9 bits (154), Expect = 9.170e-8
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   16 WLDPIKVNLDIPGSSLLQAYKGHGDVIHAIDIDAEGQMAISASSDRTLKLWDIRTGAQ 189
            WL P+  +L  PG  L++   GH D + AI + A+GQ  IS SSD TLK+W+++TGA+
Sbjct:  132 WLRPVTPSLTPPGGRLIRTLSGHSDSVRAIAVTADGQRVISGSSDNTLKIWNLQTGAK 189
[Close]
BLAST of mRNA_L-digitata_M_contig101362.1.1 vs. uniprot
Match: UPI00187EE546 (WD40 repeat domain-containing protein n=1 Tax=Tychonema sp. LEGE 06208 TaxID=1828663 RepID=UPI00187EE546)

HSP 1 Score: 63.9 bits (154), Expect = 1.220e-7
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   16 WLDPIKVNLDIPGSSLLQAYKGHGDVIHAIDIDAEGQMAISASSDRTLKLWDIRTGAQ 189
            WL P+K NL+ PG   L+   GH + + A+ I  +G+ AISAS D+TLK+WD  TG +
Sbjct:  169 WLRPLKANLERPGEGALRTLAGHSEAVRAVAIAPDGKTAISASWDKTLKIWDTETGRE 226
[Close]
BLAST of mRNA_L-digitata_M_contig101362.1.1 vs. uniprot
Match: A0A524QCC1_9EURY (TIR domain-containing protein n=1 Tax=ANME-2 cluster archaeon TaxID=2056317 RepID=A0A524QCC1_9EURY)

HSP 1 Score: 63.9 bits (154), Expect = 1.370e-7
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   13 VWLDPIKVNLDIPGSSLLQAYKGHGDVIHAIDIDAEGQMAISASSDRTLKLWDIRTGAQ 189
            +WL P+K +L  PG  L++ ++GH   +  + +  +G+ AISASSD+TL++WDI TG Q
Sbjct:  656 IWLRPLKTSLTPPGGPLIRTFEGHTHAVKGVAVMPDGKHAISASSDKTLRIWDIDTGKQ 714
[Close]
BLAST of mRNA_L-digitata_M_contig101362.1.1 vs. uniprot
Match: A0A3D3LB82_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A3D3LB82_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 1.400e-7
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   16 WLDPIKVNLDIPGSSLLQAYKGHGDVIHAIDIDAEGQMAISASSDRTLKLWDIRTGAQ 189
            WLDP+K NL IP   LL   +GH   + A+ +  +G+ A+S S+DRTL++WDI +G +
Sbjct:  727 WLDPLKTNLHIPDGDLLLTLEGHSAEVEAVAVTPDGRWAVSGSTDRTLRVWDIDSGQE 784
[Close]
BLAST of mRNA_L-digitata_M_contig101362.1.1 vs. uniprot
Match: A0A2D0HHU0_9NOSO (Uncharacterized protein (Fragment) n=1 Tax=Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 TaxID=1206980 RepID=A0A2D0HHU0_9NOSO)

HSP 1 Score: 61.2 bits (147), Expect = 1.840e-7
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   16 WLDPIKVNLDIPGSSLLQAYKGHGDVIHAIDIDAEGQMAISASSDRTLKLWDIRTG 183
            WL P+  NL  PG SLL    GH D ++AI +  +G+  ISAS D+TLKLW++ TG
Sbjct:  137 WLRPLTSNLISPGGSLLLTLAGHSDWVNAIVLTLDGKRVISASDDKTLKLWNLETG 192
[Close]
BLAST of mRNA_L-digitata_M_contig101362.1.1 vs. uniprot
Match: UPI001F602C53 (hypothetical protein n=1 Tax=Microcoleus vaginatus TaxID=119532 RepID=UPI001F602C53)

HSP 1 Score: 63.2 bits (152), Expect = 2.150e-7
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   13 VWLDPIKVNLDIPGSSLLQAYKGHGDVIHAIDIDAEGQMAISASSDRTLKLWDIRTGAQ 189
            +WL P+K NL+ PG   L+   GH   + A+ I  +G+ AISAS D+TLK+WD  TG +
Sbjct:  132 LWLRPLKANLERPGEGCLRTLSGHTHSVFAVAIAPDGKRAISASEDKTLKIWDTETGTE 190
[Close]
BLAST of mRNA_L-digitata_M_contig101362.1.1 vs. uniprot
Match: G7WPS4_METH6 (WD repeat protein n=1 Tax=Methanosaeta harundinacea (strain 6Ac) TaxID=1110509 RepID=G7WPS4_METH6)

HSP 1 Score: 63.2 bits (152), Expect = 2.450e-7
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   16 WLDPIKVNLDIPGSSLLQAYKGHGDVIHAIDIDAEGQMAISASSDRTLKLWDIRTGAQ 189
            W+ P+  NL  PG  LL+  KGH D + A+ +  +G+ A+SAS DRTLK+WD+  G +
Sbjct:  632 WIRPMTPNLTPPGGPLLRILKGHSDSVRAVAVTPDGRRAVSASGDRTLKVWDLERGEE 689
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101362.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L9ZQG5_9CYAN2.010e-844.07WD40 repeat domain-containing protein n=1 Tax=Okea... [more]
UPI001688C1F12.270e-844.44tetratricopeptide repeat protein n=1 Tax=unclassif... [more]
A0A6P0XNU5_9CYAN7.280e-840.68Bulb-type lectin domain-containing protein (Fragme... [more]
UPI001686C5279.170e-846.55hypothetical protein n=1 Tax=Calothrix sp. FACHB-1... [more]
UPI00187EE5461.220e-746.55WD40 repeat domain-containing protein n=1 Tax=Tych... [more]
A0A524QCC1_9EURY1.370e-744.07TIR domain-containing protein n=1 Tax=ANME-2 clust... [more]
A0A3D3LB82_9BACT1.400e-744.83Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
A0A2D0HHU0_9NOSO1.840e-750.00Uncharacterized protein (Fragment) n=1 Tax=Nostoc ... [more]
UPI001F602C532.150e-745.76hypothetical protein n=1 Tax=Microcoleus vaginatus... [more]
G7WPS4_METH62.450e-744.83WD repeat protein n=1 Tax=Methanosaeta harundinace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101362contigL-digitata_M_contig101362:3..926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog56110.Oscil6304_4354
PFAMsNB-ARC,WD40
Model size924
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.71e-08
EggNOG OGsCOG2319@1|root,COG2319@2|Bacteria,1FZVW@1117|Cyanobacteria,1H8KE@1150|Oscillatoriales
DescriptionPFAM WD domain, G-beta repeat
Cds size924
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406618.212817-CDS-L-digitata_M_contig101362:2..9261682406618.212817-CDS-L-digitata_M_contig101362:2..926Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101362 3..926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101362.1.1prot_L-digitata_M_contig101362.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101362 3..926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101362.1.1

>prot_L-digitata_M_contig101362.1.1 ID=prot_L-digitata_M_contig101362.1.1|Name=mRNA_L-digitata_M_contig101362.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=308bp
KPEPVWLDPIKVNLDIPGSSLLQAYKGHGDVIHAIDIDAEGQMAISASSD
RTLKLWDIRTGAQLRTFRGHHDLVHTVAFTQNGKFAISGSDDLSLKVWDI
EKGTNLRTYALHSDKILSIVPLGDNKRVLSSDESGKLFLWDLWSGEIIKD
MESPINRIWSIAVTPENHMAFTAGDDHTIGCVSLKDGSSPLRLTAHDDWI
WSLKVTPDGRHLISASEDQSIIVWDLFTGQVARVLSGHQAGVRAIDLSKD
GKTLVSASEDQSMIVWDFEQGKILRTFTGHDDWVWDMAITPDGKGVLSAS
DDSSLKLW
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mRNA from alignment at L-digitata_M_contig101362:3..926+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101362.1.1 ID=mRNA_L-digitata_M_contig101362.1.1|Name=mRNA_L-digitata_M_contig101362.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=924bp|location=Sequence derived from alignment at L-digitata_M_contig101362:3..926+ (Laminaria digitata LdigPH10_18mv male)
AAACCAGAACCGGTATGGCTGGATCCAATCAAAGTAAATCTGGATATCCC
TGGCAGTTCGCTGCTCCAGGCCTACAAGGGGCACGGCGACGTAATTCATG
CCATCGATATCGATGCTGAAGGACAAATGGCTATTTCTGCATCGAGTGAT
AGAACATTAAAACTGTGGGATATCCGGACAGGTGCGCAGCTTCGGACATT
CAGGGGACACCACGATCTTGTACATACCGTTGCATTTACCCAGAATGGGA
AATTTGCTATTTCTGGTTCTGATGACCTTTCACTTAAGGTATGGGATATA
GAAAAAGGCACCAACCTGCGAACCTATGCGCTTCACTCAGACAAAATACT
GTCTATTGTCCCACTGGGTGATAACAAACGCGTGCTGTCTTCCGATGAAT
CGGGTAAGCTGTTTCTGTGGGATTTGTGGAGCGGTGAGATCATCAAAGAC
ATGGAGTCTCCCATCAACAGGATTTGGTCTATTGCTGTGACGCCGGAAAA
CCATATGGCTTTCACCGCCGGCGATGATCACACCATTGGCTGCGTTAGCC
TGAAAGATGGCTCAAGCCCACTGCGATTAACTGCACACGATGACTGGATC
TGGTCCTTAAAGGTTACGCCAGATGGCCGGCACCTCATCAGTGCATCCGA
AGACCAGAGCATTATCGTATGGGATTTGTTTACCGGACAGGTTGCCCGTG
TTTTAAGCGGTCATCAAGCCGGCGTCCGTGCCATTGACCTGTCAAAAGAT
GGTAAAACGCTCGTTTCTGCCTCTGAAGATCAGTCCATGATTGTGTGGGA
TTTTGAGCAAGGCAAAATCCTCAGGACGTTCACCGGTCACGATGACTGGG
TTTGGGACATGGCCATCACACCTGATGGCAAAGGCGTGCTCTCTGCATCG
GATGATTCATCGCTCAAGTTATGG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101362:3..926+

>mRNA_L-digitata_M_contig101362.1.1 ID=mRNA_L-digitata_M_contig101362.1.1|Name=mRNA_L-digitata_M_contig101362.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=924bp|location=Sequence derived from alignment at L-digitata_M_contig101362:3..926+ (Laminaria digitata LdigPH10_18mv male)
AAACCAGAACCGGTATGGCTGGATCCAATCAAAGTAAATCTGGATATCCC
TGGCAGTTCGCTGCTCCAGGCCTACAAGGGGCACGGCGACGTAATTCATG
CCATCGATATCGATGCTGAAGGACAAATGGCTATTTCTGCATCGAGTGAT
AGAACATTAAAACTGTGGGATATCCGGACAGGTGCGCAGCTTCGGACATT
CAGGGGACACCACGATCTTGTACATACCGTTGCATTTACCCAGAATGGGA
AATTTGCTATTTCTGGTTCTGATGACCTTTCACTTAAGGTATGGGATATA
GAAAAAGGCACCAACCTGCGAACCTATGCGCTTCACTCAGACAAAATACT
GTCTATTGTCCCACTGGGTGATAACAAACGCGTGCTGTCTTCCGATGAAT
CGGGTAAGCTGTTTCTGTGGGATTTGTGGAGCGGTGAGATCATCAAAGAC
ATGGAGTCTCCCATCAACAGGATTTGGTCTATTGCTGTGACGCCGGAAAA
CCATATGGCTTTCACCGCCGGCGATGATCACACCATTGGCTGCGTTAGCC
TGAAAGATGGCTCAAGCCCACTGCGATTAACTGCACACGATGACTGGATC
TGGTCCTTAAAGGTTACGCCAGATGGCCGGCACCTCATCAGTGCATCCGA
AGACCAGAGCATTATCGTATGGGATTTGTTTACCGGACAGGTTGCCCGTG
TTTTAAGCGGTCATCAAGCCGGCGTCCGTGCCATTGACCTGTCAAAAGAT
GGTAAAACGCTCGTTTCTGCCTCTGAAGATCAGTCCATGATTGTGTGGGA
TTTTGAGCAAGGCAAAATCCTCAGGACGTTCACCGGTCACGATGACTGGG
TTTGGGACATGGCCATCACACCTGATGGCAAAGGCGTGCTCTCTGCATCG
GATGATTCATCGCTCAAGTTATGG
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