mRNA_L-digitata_M_contig101325.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101325.1.1
Unique NamemRNA_L-digitata_M_contig101325.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101325.1.1 vs. uniprot
Match: Q9SMD8_9PHAE (Glycolate oxidase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD8_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.700e-37
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    4 QDRVITAQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFASAGGAHASGTKDGGNDS 213
            +DRVITAQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFASAGGAHASGTKDGGNDS
Sbjct:    2 KDRVITAQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFASAGGAHASGTKDGGNDS 71
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BLAST of mRNA_L-digitata_M_contig101325.1.1 vs. uniprot
Match: D8LDI6_ECTSI (Glycolate Oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDI6_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.210e-33
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    4 QDRVITAQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFASAGGAHASGTKDGGNDS 213
            +DR IT QLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNF SAGGAHASGTKDGGNDS
Sbjct:  157 KDRKITEQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFVSAGGAHASGTKDGGNDS 226
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BLAST of mRNA_L-digitata_M_contig101325.1.1 vs. uniprot
Match: A0A836CMB2_9STRA (Glycolate oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.210e-28
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    4 QDRVITAQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFASAGGAHASGTKDGGNDS 213
            +DR +TA+LVKRA A+GYTALAVTVDTPVLGRREAD+RNRFKLP HLTMGNF  AGGAHA GTKDGG DS
Sbjct:  159 KDRKLTAELVKRAEASGYTALAVTVDTPVLGRREADVRNRFKLPVHLTMGNFIGAGGAHAEGTKDGGKDS 228
[Close]
BLAST of mRNA_L-digitata_M_contig101325.1.1 vs. uniprot
Match: A0A7S2V919_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V919_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.230e-27
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    4 QDRVITAQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFASAGGAHASGTKDGGNDS 213
            +DRV+T  LV+RA AAGY ALAVTVDTPVLGRREAD+RNRFKLP HLTMGNF   GG+HA GTKDGG DS
Sbjct:  102 KDRVVTLDLVRRAEAAGYKALAVTVDTPVLGRREADVRNRFKLPPHLTMGNFVGKGGSHAEGTKDGGKDS 171
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BLAST of mRNA_L-digitata_M_contig101325.1.1 vs. uniprot
Match: A0A6V1QYU9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QYU9_HETAK)

HSP 1 Score: 108 bits (270), Expect = 1.590e-26
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    4 QDRVITAQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFASAGGAHASGTKDGGNDS 213
            +DR +   LV+RA AAGY A AVTVDTPVLGRREAD+RNRFKLP HLTMGNFAS GGAHASGTKDGG DS
Sbjct:  158 KDRDVVLDLVRRAEAAGYKAFAVTVDTPVLGRREADVRNRFKLPTHLTMGNFASKGGAHASGTKDGGKDS 227
[Close]
BLAST of mRNA_L-digitata_M_contig101325.1.1 vs. uniprot
Match: W7UBQ6_9STRA (Peroxisomal glycolate oxidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBQ6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.120e-25
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    4 QDRVITAQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFASAGGAHASGTKDGGNDS 213
            +DR +TA+L +RA  AGY ALA+TVDTPVLGRREAD+RNRFKLP HLTM NFA AGG+HA GTKDGG DS
Sbjct:  154 KDRELTAELARRAERAGYKALAITVDTPVLGRREADVRNRFKLPAHLTMANFAGAGGSHAEGTKDGGKDS 223
[Close]
BLAST of mRNA_L-digitata_M_contig101325.1.1 vs. uniprot
Match: A0A7S2FX59_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FX59_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.040e-23
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    4 QDRVITAQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFASAGGAHASGTK 195
            +DR +T  L+KRA AAGY ALAVTVDTPVLGRREAD+RN+F LP HLTMGNFA+ GG HASGTK
Sbjct:  119 KDREVTLDLIKRAEAAGYKALAVTVDTPVLGRREADVRNKFSLPAHLTMGNFANTGGDHASGTK 182
[Close]
BLAST of mRNA_L-digitata_M_contig101325.1.1 vs. uniprot
Match: A0A7R9UGG8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGG8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.410e-22
Identity = 49/67 (73.13%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    4 QDRVITAQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFASAGGAHASGTKDGG 204
            +DR +T  LV+RA   GY ALAVTVDTPVLGRREAD+RNRF LP HLTMGNFA  GGAH+SGTK  G
Sbjct:  156 KDRDVTLDLVRRAERNGYKALAVTVDTPVLGRREADVRNRFSLPSHLTMGNFAGVGGAHSSGTKSSG 222
[Close]
BLAST of mRNA_L-digitata_M_contig101325.1.1 vs. uniprot
Match: A0A7S1UI71_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UI71_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 6.180e-22
Identity = 47/67 (70.15%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:    4 QDRVITAQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFASAGGAHASGTKDGG 204
            +DR +T  L++RA  AGY A AVTVDTP+LGRREAD+RNRF LP HLTMGNFA+ GG H+SGTKD G
Sbjct:  157 KDREVTMDLIRRAERAGYLAFAVTVDTPLLGRREADVRNRFSLPSHLTMGNFANKGGDHSSGTKDAG 223
[Close]
BLAST of mRNA_L-digitata_M_contig101325.1.1 vs. uniprot
Match: A0A7S4KCV1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCV1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.290e-19
Identity = 49/72 (68.06%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    4 QDRVITAQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFASAGGA--HASGTKDGGNDS 213
            +DR ITA LV+RA  AGY ALAVTVDTP LGRRE D+RNRFKLP HLTM NF    G   H++G K GGNDS
Sbjct:  161 KDRGITADLVRRAERAGYRALAVTVDTPCLGRREPDVRNRFKLPSHLTMKNFVEMSGDNDHSNGVKKGGNDS 232
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101325.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q9SMD8_9PHAE2.700e-3798.57Glycolate oxidase (Fragment) n=1 Tax=Laminaria dig... [more]
D8LDI6_ECTSI1.210e-3394.29Glycolate Oxidase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A836CMB2_9STRA2.210e-2882.86Glycolate oxidase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S2V919_9STRA5.230e-2778.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1QYU9_HETAK1.590e-2680.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
W7UBQ6_9STRA1.120e-2575.71Peroxisomal glycolate oxidase n=2 Tax=Monodopsidac... [more]
A0A7S2FX59_9STRA3.040e-2376.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9UGG8_9STRA4.410e-2273.13Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1UI71_9STRA6.180e-2270.15Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4KCV1_9STRA4.290e-1968.06Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101325contigL-digitata_M_contig101325:104..316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI31032
PFAMsFMN_dh
Model size213
Max annot lvl4776|Peronosporales
KEGG rclassRC00042
KEGG koko:K11517
KEGG ReactionR00475
KEGG Pathwayko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko04146,map00630,map01100,map01110,map01120,map01130,map01200,map04146
KEGG ModuleM00532
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.79e-17
EggNOG OGsCOG1304@1|root,KOG0538@2759|Eukaryota,3Q7QY@4776|Peronosporales
EC1.1.3.15
DescriptionFMN-dependent dehydrogenase
Cds size213
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406617.7260273-CDS-L-digitata_M_contig101325:103..3161682406617.7260273-CDS-L-digitata_M_contig101325:103..316Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101325 104..316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101325.1.1prot_L-digitata_M_contig101325.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101325 104..316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101325.1.1

>prot_L-digitata_M_contig101325.1.1 ID=prot_L-digitata_M_contig101325.1.1|Name=mRNA_L-digitata_M_contig101325.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=71bp
LQDRVITAQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTM
GNFASAGGAHASGTKDGGNDS
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mRNA from alignment at L-digitata_M_contig101325:104..316-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101325.1.1 ID=mRNA_L-digitata_M_contig101325.1.1|Name=mRNA_L-digitata_M_contig101325.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig101325:104..316- (Laminaria digitata LdigPH10_18mv male)
CTACAGGACCGCGTGATCACAGCCCAGCTGGTGAAGCGCGCCCTGGCTGC
CGGCTACACGGCTCTTGCCGTTACCGTCGACACCCCCGTGCTTGGAAGGC
GAGAGGCGGACATGCGAAACCGTTTCAAGCTCCCGGAGCACCTCACCATG
GGAAACTTTGCCTCGGCTGGAGGGGCCCACGCTTCGGGCACCAAGGACGG
GGGGAACGACTCG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101325:104..316-

>mRNA_L-digitata_M_contig101325.1.1 ID=mRNA_L-digitata_M_contig101325.1.1|Name=mRNA_L-digitata_M_contig101325.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig101325:104..316- (Laminaria digitata LdigPH10_18mv male)
CTACAGGACCGCGTGATCACAGCCCAGCTGGTGAAGCGCGCCCTGGCTGC
CGGCTACACGGCTCTTGCCGTTACCGTCGACACCCCCGTGCTTGGAAGGC
GAGAGGCGGACATGCGAAACCGTTTCAAGCTCCCGGAGCACCTCACCATG
GGAAACTTTGCCTCGGCTGGAGGGGCCCACGCTTCGGGCACCAAGGACGG
GGGGAACGACTCG
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