mRNA_L-digitata_M_contig10132.6.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10132.6.1
Unique NamemRNA_L-digitata_M_contig10132.6.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10132.6.1 vs. uniprot
Match: D7G4C9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4C9_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.550e-19
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:   10 RVVWLSSEDDSKAFDFDVPYICLHAISKDPATFPTPCIYCQV 135
            RVVWLSSED SKAFDFDV YICLHAISKDP TFP PCIYCQ+
Sbjct:   60 RVVWLSSEDQSKAFDFDVAYICLHAISKDPGTFPNPCIYCQL 101
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BLAST of mRNA_L-digitata_M_contig10132.6.1 vs. uniprot
Match: A0A812X7B4_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X7B4_SYMMI)

HSP 1 Score: 63.2 bits (152), Expect = 1.230e-11
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    7 RRVVWLSSEDDSKAFDFDVPYICLHAISKDPATFPTPCIYCQV 135
            RRV+W S E    A+DFDVPYI LHA++ DP++FP PC+YCQ+
Sbjct:   31 RRVIWASEE---LAYDFDVPYIVLHAVTHDPSSFPRPCLYCQL 70
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BLAST of mRNA_L-digitata_M_contig10132.6.1 vs. uniprot
Match: A0A7S3HJ42_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJ42_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 7.890e-10
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    7 RRVVWLSSEDDSKAFDFDVPYICLHAISKDPATFPTPCIYCQV 135
            +RV+WL   +   A+DFDVPYI LHAI++DP ++P PCIYCQ+
Sbjct:   60 KRVLWLGVGES--AYDFDVPYIALHAITRDPDSYPKPCIYCQL 100
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BLAST of mRNA_L-digitata_M_contig10132.6.1 vs. uniprot
Match: UPI00098E822A (chloride conductance regulatory protein ICln-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E822A)

HSP 1 Score: 60.1 bits (144), Expect = 8.950e-10
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    7 RRVVWLSSEDDSKAFDFDVPYICLHAISKDPATFPTPCIYCQV 135
            RRV+WLS ED SK +  D   I LHA+S+DP T+P+PCIY ++
Sbjct:   27 RRVIWLSDEDKSKGYAVDFSSISLHAVSRDPETYPSPCIYARI 69
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BLAST of mRNA_L-digitata_M_contig10132.6.1 vs. uniprot
Match: F0WL16_9STRA (Uncharacterized protein AlNc14C139G7205 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WL16_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.450e-9
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    7 RRVVWLS--SEDDSKAFDFDVPYICLHAISKDPATFPTPCIYCQV 135
            RR +W+S  S D S+ + +D+  I LHAIS+DPA FP PC+YCQ+
Sbjct:   66 RRAIWISNTSSDTSRGYSWDIKCITLHAISRDPAAFPVPCLYCQI 110
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BLAST of mRNA_L-digitata_M_contig10132.6.1 vs. uniprot
Match: A0A2I0WCX7_9ASPA (Chloride conductance regulatory protein ICln n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WCX7_9ASPA)

HSP 1 Score: 55.8 bits (133), Expect = 1.360e-8
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    7 RRVVWLSSEDDSKAFDFDVPYICLHAISKDPATFPTPCIYCQ 132
            RRV+WLS  D  K +  D   I LHA+S+DP T+P+PCIY Q
Sbjct:   56 RRVIWLSDTDRDKCYSVDFLSISLHAVSRDPETYPSPCIYTQ 97
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BLAST of mRNA_L-digitata_M_contig10132.6.1 vs. uniprot
Match: UPI00109FFC37 (chloride conductance regulatory protein ICln n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109FFC37)

HSP 1 Score: 57.0 bits (136), Expect = 1.560e-8
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    7 RRVVWLSSEDDSKAFDFDVPYICLHAISKDPATFPTPCIYCQV 135
            RRV+WLS  D  K +  D   I LHA+S+DP T+P+PCIY Q+
Sbjct:   56 RRVIWLSDTDRDKCYSVDFLSISLHAVSRDPETYPSPCIYTQI 98
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BLAST of mRNA_L-digitata_M_contig10132.6.1 vs. uniprot
Match: A0A8J5I5W5_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5I5W5_ZINOF)

HSP 1 Score: 55.1 bits (131), Expect = 1.670e-8
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    7 RRVVWLSSEDDSKAFDFDVPYICLHAISKDPATFPTPCIYCQV 135
            RRV+WLS  D  K +  D   + LHA+S+DP T+P PCIY QV
Sbjct:   67 RRVIWLSDADKGKGYAVDFLSLSLHAVSRDPETYPFPCIYTQV 109
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BLAST of mRNA_L-digitata_M_contig10132.6.1 vs. uniprot
Match: A0A484LMB5_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LMB5_9ASTE)

HSP 1 Score: 54.3 bits (129), Expect = 2.810e-8
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    7 RRVVWLSSEDDSKAFDFDVPYICLHAISKDPATFPTPCIYCQ 132
            R+VVWLS  D  K +  D  +I LHA+S+DP  +P+PCIY Q
Sbjct:   53 RQVVWLSDTDKEKGYAVDFCHISLHAVSRDPEAYPSPCIYAQ 94
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BLAST of mRNA_L-digitata_M_contig10132.6.1 vs. uniprot
Match: UPI00098E569D (uncharacterized protein LOC109825422 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E569D)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-8
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    7 RRVVWLSSEDDSKAFDFDVPYICLHAISKDPATFPTPCIYCQV 135
            +RV+WL  ED SK +  D   I LHA+S+DP T+P+PCIY ++
Sbjct:  295 KRVIWLRDEDKSKGYAVDFSSISLHAVSRDPETYPSPCIYARI 337
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10132.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4C9_ECTSI3.550e-1988.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812X7B4_SYMMI1.230e-1160.47Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7S3HJ42_9STRA7.890e-1058.14Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
UPI00098E822A8.950e-1055.81chloride conductance regulatory protein ICln-like ... [more]
F0WL16_9STRA1.450e-953.33Uncharacterized protein AlNc14C139G7205 n=1 Tax=Al... [more]
A0A2I0WCX7_9ASPA1.360e-854.76Chloride conductance regulatory protein ICln n=1 T... [more]
UPI00109FFC371.560e-853.49chloride conductance regulatory protein ICln n=1 T... [more]
A0A8J5I5W5_ZINOF1.670e-853.49Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A484LMB5_9ASTE2.810e-852.38Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
UPI00098E569D2.910e-851.16uncharacterized protein LOC109825422 n=1 Tax=Aspar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10132contigL-digitata_M_contig10132:8805..8939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G4C9
Preferred nameCLNS1A
PFAMsVoldacs
Model size135
Max annot lvl2759|Eukaryota
KEGG koko:K05019,ko:K18405
KEGG TC1.A.47
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0005215,GO:0005216,GO:0005229,GO:0005253,GO:0005254,GO:0005261,GO:0005267,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006820,GO:0006821,GO:0006884,GO:0008150,GO:0008152,GO:0008324,GO:0008361,GO:0008380,GO:0008509,GO:0009987,GO:0010467,GO:0015075,GO:0015077,GO:0015079,GO:0015103,GO:0015108,GO:0015267,GO:0015318,GO:0015672,GO:0015698,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019725,GO:0022607,GO:0022613,GO:0022618,GO:0022803,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0030001,GO:0031974,GO:0031981,GO:0032535,GO:0032991,GO:0034220,GO:0034622,GO:0034641,GO:0034708,GO:0034709,GO:0034715,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045794,GO:0046483,GO:0046873,GO:0046982,GO:0046983,GO:0051179,GO:0051234,GO:0055085,GO:0061778,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071804,GO:0071805,GO:0071826,GO:0071840,GO:0071944,GO:0090066,GO:0090304,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662,GO:0120114,GO:1901360,GO:1902476,GO:1902494,GO:1990234,GO:1990935
Exons1
Evalue5.82e-20
EggNOG OGsKOG3238@1|root,KOG3238@2759|Eukaryota
Ec32 ortholog descriptionICln
Ec32 orthologEc-00_007320.1
Descriptioncell volume homeostasis
Cds size135
COG categoryL
BRITEko00000,ko00001,ko03036,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406617.692177-CDS-L-digitata_M_contig10132:8804..89391682406617.692177-CDS-L-digitata_M_contig10132:8804..8939Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10132 8805..8939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10132.6.1prot_L-digitata_M_contig10132.6.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10132 8805..8939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10132.6.1

>prot_L-digitata_M_contig10132.6.1 ID=prot_L-digitata_M_contig10132.6.1|Name=mRNA_L-digitata_M_contig10132.6.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=45bp
MRRRVVWLSSEDDSKAFDFDVPYICLHAISKDPATFPTPCIYCQV
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mRNA from alignment at L-digitata_M_contig10132:8805..8939-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10132.6.1 ID=mRNA_L-digitata_M_contig10132.6.1|Name=mRNA_L-digitata_M_contig10132.6.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=135bp|location=Sequence derived from alignment at L-digitata_M_contig10132:8805..8939- (Laminaria digitata LdigPH10_18mv male)
ATGCGCAGGCGAGTAGTGTGGCTGAGCAGCGAGGACGATTCCAAGGCTTT
CGACTTCGACGTGCCGTACATCTGCCTCCACGCCATATCGAAGGACCCAG
CCACTTTTCCGACGCCGTGCATTTACTGCCAGGTA
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Coding sequence (CDS) from alignment at L-digitata_M_contig10132:8805..8939-

>mRNA_L-digitata_M_contig10132.6.1 ID=mRNA_L-digitata_M_contig10132.6.1|Name=mRNA_L-digitata_M_contig10132.6.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=135bp|location=Sequence derived from alignment at L-digitata_M_contig10132:8805..8939- (Laminaria digitata LdigPH10_18mv male)
ATGCGCAGGCGAGTAGTGTGGCTGAGCAGCGAGGACGATTCCAAGGCTTT
CGACTTCGACGTGCCGTACATCTGCCTCCACGCCATATCGAAGGACCCAG
CCACTTTTCCGACGCCGTGCATTTACTGCCAGGTA
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