mRNA_L-digitata_M_contig10130.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10130.1.1
Unique NamemRNA_L-digitata_M_contig10130.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: D7G6A7_ECTSI (Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A7_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 5.240e-81
Identity = 116/145 (80.00%), Postives = 133/145 (91.72%), Query Frame = 1
Query:   22 QVTLYEEFSKFADRTAVAQDVIFEITSMDHFDDVVSRAAGADEASLDGYEDAQGNLRIPHKLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIRDNS 456
            +VTLYEEFS++ADR +VAQ+VIFEITS +HF+DVVSRAAGADE   +GYEDAQGN R+PHKL+MV+IHAGWCRVCKGLQPKLLKL+T+HPEVLCCKINK  +EELA KLGVRGLPM+IFYK GKR+DH TTANINTIEE IRDN+
Sbjct:   24 KVTLYEEFSRYADRRSVAQEVIFEITSAEHFEDVVSRAAGADEH--EGYEDAQGNWRVPHKLMMVQIHAGWCRVCKGLQPKLLKLITKHPEVLCCKINKAHHEELAAKLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRDNT 166          
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A835Z3K6_9STRA (Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K6_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.370e-53
Identity = 78/141 (55.32%), Postives = 105/141 (74.47%), Query Frame = 1
Query:   31 LYEEFSKFADRTAVAQDVIFEITSMDHFDDVVSRAAGADEASLDGYEDAQGNLRIPHKLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIRDN 453
            +YEE SK+AD  AVA D + EITS +H D +++ AA  +     GY D  GN R+PH+L+M+++HA WCR C G++PKLLKL  +HPEVLCCK+NK  +E++A +LG+R LP  + YK GKRIDHFTTA+I TIE+G+ DN
Sbjct:    1 MYEESSKYADPHAVATDCVVEITSNEHLDRILATAAQVENPDA-GYVDHHGNQRLPHRLIMIQVHANWCRACIGVRPKLLKLCARHPEVLCCKLNKGNHEDVAARLGIRALPTFVLYKNGKRIDHFTTADIETIEQGVLDN 140          
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A7R9U8D8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8D8_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.760e-36
Identity = 64/140 (45.71%), Postives = 88/140 (62.86%), Query Frame = 1
Query:   34 YEEFSKFADRTAVAQDVIFEITSMDHFDDVVSRAAGADEASLDGYEDAQGNLRIPHKLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIRDN 453
            YEE S +AD TA A + + ++TS + FD ++S AAGA+  S D         + PHK++M+ +HA WCR CK L  + LK+   HPEVLC K+N   N E+   LG+RG+P+ I YK GKRIDHF   N + +EE + DN
Sbjct:   75 YEECSFYADATACAMETLIDVTSQEQFDFIISHAAGANPLSPD---------QKPHKMVMLMVHATWCRKCKYLMKQYLKVAKAHPEVLCLKLNLATNAEVGKSLGIRGVPLFIIYKAGKRIDHFYAENADDLEEQVEDN 205          
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A061S1S4_9CHLO (Thioredoxin-like chloroplastic-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S1S4_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 3.000e-9
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  202 KLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGK-RIDHFTTA 417
            +L++V+ +A WC  C+GL P+L KL+ +HP+V   K+    N  L   LGV+ LP   FY+  + R+D F+ +
Sbjct:   99 RLVIVDFYATWCHACRGLYPRLSKLMEEHPDVKLLKVEFESNRSLCKSLGVKVLPFFHFYRGNEGRLDAFSAS 171          
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A093BLW0_CHAPE (Thioredoxin (Fragment) n=2 Tax=Chaetura pelagica TaxID=8897 RepID=A0A093BLW0_CHAPE)

HSP 1 Score: 58.2 bits (139), Expect = 2.700e-8
Identity = 27/82 (32.93%), Postives = 48/82 (58.54%), Query Frame = 1
Query:  202 KLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIR 447
            KL++V+  A WC  CK ++P    LV ++ +V+  +I+    +++A    V+ +P   FYK GK++  F+ AN   +EE I+
Sbjct:   12 KLIVVDFSATWCGPCKMIKPFFHSLVEKYGDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETIK 93          
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A7C5YP98_9CHLR (Thioredoxin n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5YP98_9CHLR)

HSP 1 Score: 58.2 bits (139), Expect = 3.250e-8
Identity = 26/71 (36.62%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  208 LMVEIHAGWCRVCKGLQPKLLKLVTQHP-EVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTA 417
            +MV+  A WC  C+ + P + +L  ++   VL  K+N   ++E AG+LG+RG+P +IF+K G  +D    A
Sbjct:   20 VMVDFWAPWCGPCRMVAPFVEELAREYAGRVLVAKVNTDEHQEWAGRLGIRGIPTLIFFKNGVEVDRIVGA 90          
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: UPI001CF9EFDD (thioredoxin-like n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF9EFDD)

HSP 1 Score: 58.2 bits (139), Expect = 3.330e-8
Identity = 27/81 (33.33%), Postives = 47/81 (58.02%), Query Frame = 1
Query:  202 KLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGI 444
            KL++ +  A WC  CK + P   ++  ++ +VL  K++    EE+A    VR +P  IF+K G+++D F+ AN   ++E I
Sbjct:   21 KLVVADFTATWCGPCKMIAPIFEEMAGKYEDVLFLKVDIDEAEEVANCHNVRSVPTFIFFKNGQKVDDFSGANKEKLQEFI 101          
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A510BAW3_9EURY (Thiol reductase thioredoxin n=1 Tax=Methanofervidicoccus sp. A16 TaxID=2607662 RepID=A0A510BAW3_9EURY)

HSP 1 Score: 58.5 bits (140), Expect = 3.540e-8
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 1
Query:  184 NLRIPHKLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKG 390
            +L +  K  +V  HA WC+ CK L+P L +L  +  EV+   +++ R  ELA KLG+RGLP +I+ K G
Sbjct:   34 DLNLEGKTAIVVFHADWCKYCKDLEPTLNQLEKEGVEVIRIDVDERR--ELAEKLGIRGLPTVIYVKDG 100          
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A091VUE2_NIPNI (Thioredoxin (Fragment) n=2 Tax=Nipponia nippon TaxID=128390 RepID=A0A091VUE2_NIPNI)

HSP 1 Score: 57.8 bits (138), Expect = 3.700e-8
Identity = 27/82 (32.93%), Postives = 48/82 (58.54%), Query Frame = 1
Query:  202 KLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIR 447
            KL++V+  A WC  CK ++P    L  ++ +V+  +I+    +++A    V+ +P   FYKKGK++  F+ AN   +EE I+
Sbjct:   12 KLIVVDFSATWCGPCKMIKPFFHSLCEKYADVVFIEIDVDDAQDVATHCDVKCMPTFQFYKKGKKVQEFSGANKEKLEETIK 93          
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A091GGN8_9AVES (Thioredoxin (Fragment) n=2 Tax=Cuculus canorus TaxID=55661 RepID=A0A091GGN8_9AVES)

HSP 1 Score: 57.0 bits (136), Expect = 7.490e-8
Identity = 27/82 (32.93%), Postives = 47/82 (57.32%), Query Frame = 1
Query:  202 KLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIR 447
            KL++V+  A WC  CK ++P    L  ++ EV+  +I+    +++A    V+ +P   FYK GK++  F+ AN   +EE I+
Sbjct:   12 KLVVVDFSATWCGPCKMIKPFFYSLCEKYGEVVFIEIDVDDAQDVATHCDVKCMPTFQFYKSGKKVQEFSGANKEKLEETIK 93          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6A7_ECTSI5.240e-8180.00Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A835Z3K6_9STRA2.370e-5355.32Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7R9U8D8_9STRA2.760e-3645.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A061S1S4_9CHLO3.000e-938.36Thioredoxin-like chloroplastic-like n=1 Tax=Tetras... [more]
A0A093BLW0_CHAPE2.700e-832.93Thioredoxin (Fragment) n=2 Tax=Chaetura pelagica T... [more]
A0A7C5YP98_9CHLR3.250e-836.62Thioredoxin n=1 Tax=Anaerolineae bacterium TaxID=2... [more]
UPI001CF9EFDD3.330e-833.33thioredoxin-like n=1 Tax=Protopterus annectens Tax... [more]
A0A510BAW3_9EURY3.540e-842.03Thiol reductase thioredoxin n=1 Tax=Methanofervidi... [more]
A0A091VUE2_NIPNI3.700e-832.93Thioredoxin (Fragment) n=2 Tax=Nipponia nippon Tax... [more]
A0A091GGN8_9AVES7.490e-832.93Thioredoxin (Fragment) n=2 Tax=Cuculus canorus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10130contigL-digitata_M_contig10130:2179..3628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6A7
PFAMsTPR_16,Thioredoxin
Model size459
Max annot lvl2759|Eukaryota
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.59e-82
EggNOG OGsKOG0908@1|root,KOG0908@2759|Eukaryota
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-10_001160.1
Descriptionprotein-disulfide reductase activity
Cds size459
COG categoryS
BRITEko00000,ko00001,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406617.341685-CDS-L-digitata_M_contig10130:2178..22711682406617.341685-CDS-L-digitata_M_contig10130:2178..2271Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10130 2179..2271 +
1682406617.3541775-CDS-L-digitata_M_contig10130:2647..28841682406617.3541775-CDS-L-digitata_M_contig10130:2647..2884Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10130 2648..2884 +
1682406617.365009-CDS-L-digitata_M_contig10130:3499..36281682406617.365009-CDS-L-digitata_M_contig10130:3499..3628Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10130 3500..3628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10130.1.1prot_L-digitata_M_contig10130.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10130 2179..3628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10130.1.1

>prot_L-digitata_M_contig10130.1.1 ID=prot_L-digitata_M_contig10130.1.1|Name=mRNA_L-digitata_M_contig10130.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=153bp
MFLVTRPQVTLYEEFSKFADRTAVAQDVIFEITSMDHFDDVVSRAAGADE
ASLDGYEDAQGNLRIPHKLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVL
CCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIRD
NS*
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mRNA from alignment at L-digitata_M_contig10130:2179..3628+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10130.1.1 ID=mRNA_L-digitata_M_contig10130.1.1|Name=mRNA_L-digitata_M_contig10130.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1450bp|location=Sequence derived from alignment at L-digitata_M_contig10130:2179..3628+ (Laminaria digitata LdigPH10_18mv male)
ATGTTTCTTGTCACACGTCCACAGGTGACCCTCTACGAAGAATTTTCAAA GTTCGCAGACAGAACAGCTGTGGCACAGGATGTGATCTTCGAGGTGAGCC GTTCTCCTTCATTCATACTGCGTACCTCTGGTAAGTATTTCGTATAAGCG TGCCCCGTAGTACTTACAGCGTCGCTCCCCCACTGCAACCGCAAAAATAT AGACTGACAACTAACGTCTGTTTTGTGAAGGGACGAGTTCTTGAACATGA AACCATTGCTCGTCCAGAGCTTTGCGCCACCAACGAGCGCCAGGTGGATA TGTTCGTCGATTGTCAAGCGGCGACTTGCCCTTGAGAGCATGCACAAACT CGAGAGTTGAGGGGTGCGAGAAAGCCACAAGTTCAGTGGGCATGAGGCAA TCCGCACAATTTCACGAAACATGCTGGAGGACCCTTCACTGATACCCCTC TCTCCTCTCCCCCCCCCAGATTACGTCAATGGACCACTTTGACGATGTGG TGTCTCGGGCAGCAGGGGCTGACGAAGCTTCCTTGGACGGGTACGAGGAC GCGCAAGGAAACTTGAGAATTCCGCACAAGCTTTTGATGGTCGAGATACA CGCGGGATGGTGTCGCGTGTGCAAAGGGTTGCAACCCAAGCTTTTGAAGC TTGTAACACAGCATCCGGAGGTCCTCTGCTGCAAGATCAACAAGACGAGA AACGAGGTAAATGTCTGATAATTCGACACCGGCCTGCACAAACTTACTTC GGTGTATAGGACCTTACGACAGATGCATCACAGTAGATATACACTGACGT TGGAGATATTTGTACAGACAGAAAATGACCCAGGTTACGGGAACAACAGA AAGTTATGTGTTTTGCACGTTTGGGAGCAGACGGTCATATTCCTGTGGAC GACTCGACAATATAGGAAAGAGGCGATCGGCATTTCTACCGGCACAAAAT TTACTCTTGACATGCCGTAGAACACGTCGCATGCATGCGTTTTTCCTTCT GCATAGTGAAGCATATTTCCTGCCGCCATGATACATGAATCCCAACGCGT CTCCCGTGCAGCATATAGGAAACGCTCGGGTTTGCGTGATCGCCTCTCTT GCGGAACACTTGTGCTTTGTACGAGAATAGCTGTAGACGATACGGGGCAT GTAGCCACAACTTACTTTGAAACACAGTCAAAAACATAAACGAAAATGTG AATGTATCTCCACCTCATCCACGCAGCTCGTGTAAACTCTCATGATTGAT GGCTATATTATCTCGCGCCCGACAAGAATCTCGCTGCTCTTTCGCCATTT GTCGCGGCTACGACTTCTTAGGAGCTGGCCGGAAAGCTGGGGGTGCGCGG GCTGCCCATGATAATTTTCTACAAGAAGGGAAAGCGAATCGATCACTTTA CTACAGCCAACATCAACACAATAGAGGAAGGCATCAGAGATAACTCCTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig10130:2179..3628+

>mRNA_L-digitata_M_contig10130.1.1 ID=mRNA_L-digitata_M_contig10130.1.1|Name=mRNA_L-digitata_M_contig10130.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=459bp|location=Sequence derived from alignment at L-digitata_M_contig10130:2179..3628+ (Laminaria digitata LdigPH10_18mv male)
ATGTTTCTTGTCACACGTCCACAGGTGACCCTCTACGAAGAATTTTCAAA
GTTCGCAGACAGAACAGCTGTGGCACAGGATGTGATCTTCGAGATTACGT
CAATGGACCACTTTGACGATGTGGTGTCTCGGGCAGCAGGGGCTGACGAA
GCTTCCTTGGACGGGTACGAGGACGCGCAAGGAAACTTGAGAATTCCGCA
CAAGCTTTTGATGGTCGAGATACACGCGGGATGGTGTCGCGTGTGCAAAG
GGTTGCAACCCAAGCTTTTGAAGCTTGTAACACAGCATCCGGAGGTCCTC
TGCTGCAAGATCAACAAGACGAGAAACGAGGAGCTGGCCGGAAAGCTGGG
GGTGCGCGGGCTGCCCATGATAATTTTCTACAAGAAGGGAAAGCGAATCG
ATCACTTTACTACAGCCAACATCAACACAATAGAGGAAGGCATCAGAGAT
AACTCCTAA
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