mRNA_L-digitata_M_contig10130.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: D7G6A7_ECTSI (Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A7_ECTSI) HSP 1 Score: 245 bits (625), Expect = 5.240e-81 Identity = 116/145 (80.00%), Postives = 133/145 (91.72%), Query Frame = 1
Query: 22 QVTLYEEFSKFADRTAVAQDVIFEITSMDHFDDVVSRAAGADEASLDGYEDAQGNLRIPHKLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIRDNS 456
+VTLYEEFS++ADR +VAQ+VIFEITS +HF+DVVSRAAGADE +GYEDAQGN R+PHKL+MV+IHAGWCRVCKGLQPKLLKL+T+HPEVLCCKINK +EELA KLGVRGLPM+IFYK GKR+DH TTANINTIEE IRDN+
Sbjct: 24 KVTLYEEFSRYADRRSVAQEVIFEITSAEHFEDVVSRAAGADEH--EGYEDAQGNWRVPHKLMMVQIHAGWCRVCKGLQPKLLKLITKHPEVLCCKINKAHHEELAAKLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRDNT 166
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A835Z3K6_9STRA (Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K6_9STRA) HSP 1 Score: 174 bits (441), Expect = 2.370e-53 Identity = 78/141 (55.32%), Postives = 105/141 (74.47%), Query Frame = 1
Query: 31 LYEEFSKFADRTAVAQDVIFEITSMDHFDDVVSRAAGADEASLDGYEDAQGNLRIPHKLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIRDN 453
+YEE SK+AD AVA D + EITS +H D +++ AA + GY D GN R+PH+L+M+++HA WCR C G++PKLLKL +HPEVLCCK+NK +E++A +LG+R LP + YK GKRIDHFTTA+I TIE+G+ DN
Sbjct: 1 MYEESSKYADPHAVATDCVVEITSNEHLDRILATAAQVENPDA-GYVDHHGNQRLPHRLIMIQVHANWCRACIGVRPKLLKLCARHPEVLCCKLNKGNHEDVAARLGIRALPTFVLYKNGKRIDHFTTADIETIEQGVLDN 140
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A7R9U8D8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8D8_9STRA) HSP 1 Score: 133 bits (334), Expect = 2.760e-36 Identity = 64/140 (45.71%), Postives = 88/140 (62.86%), Query Frame = 1
Query: 34 YEEFSKFADRTAVAQDVIFEITSMDHFDDVVSRAAGADEASLDGYEDAQGNLRIPHKLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIRDN 453
YEE S +AD TA A + + ++TS + FD ++S AAGA+ S D + PHK++M+ +HA WCR CK L + LK+ HPEVLC K+N N E+ LG+RG+P+ I YK GKRIDHF N + +EE + DN
Sbjct: 75 YEECSFYADATACAMETLIDVTSQEQFDFIISHAAGANPLSPD---------QKPHKMVMLMVHATWCRKCKYLMKQYLKVAKAHPEVLCLKLNLATNAEVGKSLGIRGVPLFIIYKAGKRIDHFYAENADDLEEQVEDN 205
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A061S1S4_9CHLO (Thioredoxin-like chloroplastic-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S1S4_9CHLO) HSP 1 Score: 63.2 bits (152), Expect = 3.000e-9 Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 202 KLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGK-RIDHFTTA 417
+L++V+ +A WC C+GL P+L KL+ +HP+V K+ N L LGV+ LP FY+ + R+D F+ +
Sbjct: 99 RLVIVDFYATWCHACRGLYPRLSKLMEEHPDVKLLKVEFESNRSLCKSLGVKVLPFFHFYRGNEGRLDAFSAS 171
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A093BLW0_CHAPE (Thioredoxin (Fragment) n=2 Tax=Chaetura pelagica TaxID=8897 RepID=A0A093BLW0_CHAPE) HSP 1 Score: 58.2 bits (139), Expect = 2.700e-8 Identity = 27/82 (32.93%), Postives = 48/82 (58.54%), Query Frame = 1
Query: 202 KLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIR 447
KL++V+ A WC CK ++P LV ++ +V+ +I+ +++A V+ +P FYK GK++ F+ AN +EE I+
Sbjct: 12 KLIVVDFSATWCGPCKMIKPFFHSLVEKYGDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETIK 93
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A7C5YP98_9CHLR (Thioredoxin n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5YP98_9CHLR) HSP 1 Score: 58.2 bits (139), Expect = 3.250e-8 Identity = 26/71 (36.62%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 208 LMVEIHAGWCRVCKGLQPKLLKLVTQHP-EVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTA 417
+MV+ A WC C+ + P + +L ++ VL K+N ++E AG+LG+RG+P +IF+K G +D A
Sbjct: 20 VMVDFWAPWCGPCRMVAPFVEELAREYAGRVLVAKVNTDEHQEWAGRLGIRGIPTLIFFKNGVEVDRIVGA 90
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: UPI001CF9EFDD (thioredoxin-like n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF9EFDD) HSP 1 Score: 58.2 bits (139), Expect = 3.330e-8 Identity = 27/81 (33.33%), Postives = 47/81 (58.02%), Query Frame = 1
Query: 202 KLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGI 444
KL++ + A WC CK + P ++ ++ +VL K++ EE+A VR +P IF+K G+++D F+ AN ++E I
Sbjct: 21 KLVVADFTATWCGPCKMIAPIFEEMAGKYEDVLFLKVDIDEAEEVANCHNVRSVPTFIFFKNGQKVDDFSGANKEKLQEFI 101
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A510BAW3_9EURY (Thiol reductase thioredoxin n=1 Tax=Methanofervidicoccus sp. A16 TaxID=2607662 RepID=A0A510BAW3_9EURY) HSP 1 Score: 58.5 bits (140), Expect = 3.540e-8 Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 1
Query: 184 NLRIPHKLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKG 390
+L + K +V HA WC+ CK L+P L +L + EV+ +++ R ELA KLG+RGLP +I+ K G
Sbjct: 34 DLNLEGKTAIVVFHADWCKYCKDLEPTLNQLEKEGVEVIRIDVDERR--ELAEKLGIRGLPTVIYVKDG 100
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A091VUE2_NIPNI (Thioredoxin (Fragment) n=2 Tax=Nipponia nippon TaxID=128390 RepID=A0A091VUE2_NIPNI) HSP 1 Score: 57.8 bits (138), Expect = 3.700e-8 Identity = 27/82 (32.93%), Postives = 48/82 (58.54%), Query Frame = 1
Query: 202 KLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIR 447
KL++V+ A WC CK ++P L ++ +V+ +I+ +++A V+ +P FYKKGK++ F+ AN +EE I+
Sbjct: 12 KLIVVDFSATWCGPCKMIKPFFHSLCEKYADVVFIEIDVDDAQDVATHCDVKCMPTFQFYKKGKKVQEFSGANKEKLEETIK 93
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Match: A0A091GGN8_9AVES (Thioredoxin (Fragment) n=2 Tax=Cuculus canorus TaxID=55661 RepID=A0A091GGN8_9AVES) HSP 1 Score: 57.0 bits (136), Expect = 7.490e-8 Identity = 27/82 (32.93%), Postives = 47/82 (57.32%), Query Frame = 1
Query: 202 KLLMVEIHAGWCRVCKGLQPKLLKLVTQHPEVLCCKINKTRNEELAGKLGVRGLPMIIFYKKGKRIDHFTTANINTIEEGIR 447
KL++V+ A WC CK ++P L ++ EV+ +I+ +++A V+ +P FYK GK++ F+ AN +EE I+
Sbjct: 12 KLVVVDFSATWCGPCKMIKPFFYSLCEKYGEVVFIEIDVDDAQDVATHCDVKCMPTFQFYKSGKKVQEFSGANKEKLEETIK 93 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10130.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10130.1.1 >prot_L-digitata_M_contig10130.1.1 ID=prot_L-digitata_M_contig10130.1.1|Name=mRNA_L-digitata_M_contig10130.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=153bp MFLVTRPQVTLYEEFSKFADRTAVAQDVIFEITSMDHFDDVVSRAAGADEback to top mRNA from alignment at L-digitata_M_contig10130:2179..3628+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10130.1.1 ID=mRNA_L-digitata_M_contig10130.1.1|Name=mRNA_L-digitata_M_contig10130.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1450bp|location=Sequence derived from alignment at L-digitata_M_contig10130:2179..3628+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10130:2179..3628+ >mRNA_L-digitata_M_contig10130.1.1 ID=mRNA_L-digitata_M_contig10130.1.1|Name=mRNA_L-digitata_M_contig10130.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=459bp|location=Sequence derived from alignment at L-digitata_M_contig10130:2179..3628+ (Laminaria digitata LdigPH10_18mv male)back to top |