mRNA_L-digitata_M_contig101295.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101295.1.1
Unique NamemRNA_L-digitata_M_contig101295.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101295.1.1 vs. uniprot
Match: A0A2E7PIR8_9PROT (C4-dicarboxylate ABC transporter permease n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7PIR8_9PROT)

HSP 1 Score: 360 bits (923), Expect = 3.290e-121
Identity = 193/215 (89.77%), Postives = 207/215 (96.28%), Query Frame = 1
Query:    1 MSGFEIGIISIIAMLLLIYVGMHVPVVLALISFVGVWVIKGNVKIAISLLWISSAKTVADFLFGVIPLFVLMGLLVSTAGMGKDTYDIANSMLRRVRGGLGMATVIANMIFAAITGVSIASATVFTRISVPEMLRYGYKGRFAVGTVAGSSVLGMLIPPSILLIVFALIAEESVGDLFIAGIGPGVLLTASFCGLIAIMAYGFPNMVAEPGALDR 645
            M+GFEIGIISI+AMLLLIY+GMHVPVVLALISFVGVW+IKGN+KIAISLLWIS+AKTVADFLFGVIPLFVLMGLLVSTAGMG+DTYDIA + LRRVRGGLGMATVIAN IFAAITGVSIASATVFTRISVPE+LRYGYKGRFAVGTVAGSSVLGMLIPPSILLI+FALIAEESVGDLFIAGIGPG+LLT  FC LIAIMAYGFP+ VA+ GALD+
Sbjct:    1 MTGFEIGIISIVAMLLLIYIGMHVPVVLALISFVGVWIIKGNIKIAISLLWISAAKTVADFLFGVIPLFVLMGLLVSTAGMGRDTYDIAQNALRRVRGGLGMATVIANAIFAAITGVSIASATVFTRISVPEILRYGYKGRFAVGTVAGSSVLGMLIPPSILLIIFALIAEESVGDLFIAGIGPGILLTFCFCILIAIMAYGFPSTVAQSGALDQ 215          
BLAST of mRNA_L-digitata_M_contig101295.1.1 vs. uniprot
Match: A0A2S6QFT3_9PROT (C4-dicarboxylate TRAP transporter large permease protein DctM n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6QFT3_9PROT)

HSP 1 Score: 335 bits (858), Expect = 2.380e-111
Identity = 173/210 (82.38%), Postives = 196/210 (93.33%), Query Frame = 1
Query:    1 MSGFEIGIISIIAMLLLIYVGMHVPVVLALISFVGVWVIKGNVKIAISLLWISSAKTVADFLFGVIPLFVLMGLLVSTAGMGKDTYDIANSMLRRVRGGLGMATVIANMIFAAITGVSIASATVFTRISVPEMLRYGYKGRFAVGTVAGSSVLGMLIPPSILLIVFALIAEESVGDLFIAGIGPGVLLTASFCGLIAIMAYGFPNMVAEP 630
            MSG E+G +SI+AML+LIY+GM+VP+VLA ISFVGVWV+KGNV IA+SLLWI+SAKTV +FLFGVIPLFVLMGLLVS  GMG+DTYDIA S+++R+RGGLGMATV+AN IFAAITGVSIASATVFTRISVPEMLRYGYKGRFAVG VAGSSVLGMLIPPS+LLI++ALIAEESVGDLFIAG+GPG+LLTA+FCGLIA MAY FPN VA P
Sbjct:    1 MSGLEVGAVSILAMLVLIYIGMYVPIVLAFISFVGVWVVKGNVNIAVSLLWIASAKTVGNFLFGVIPLFVLMGLLVSACGMGRDTYDIAQSLVKRIRGGLGMATVVANAIFAAITGVSIASATVFTRISVPEMLRYGYKGRFAVGVVAGSSVLGMLIPPSVLLIIYALIAEESVGDLFIAGVGPGLLLTAAFCGLIAFMAYVFPNSVASP 210          
BLAST of mRNA_L-digitata_M_contig101295.1.1 vs. uniprot
Match: A0A848W3X2_9PROT (TRAP transporter large permease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W3X2_9PROT)

HSP 1 Score: 333 bits (854), Expect = 9.880e-111
Identity = 175/210 (83.33%), Postives = 197/210 (93.81%), Query Frame = 1
Query:    1 MSGFEIGIISIIAMLLLIYVGMHVPVVLALISFVGVWVIKGNVKIAISLLWISSAKTVADFLFGVIPLFVLMGLLVSTAGMGKDTYDIANSMLRRVRGGLGMATVIANMIFAAITGVSIASATVFTRISVPEMLRYGYKGRFAVGTVAGSSVLGMLIPPSILLIVFALIAEESVGDLFIAGIGPGVLLTASFCGLIAIMAYGFPNMVAEP 630
            M+G EIG+ SI+AML+LIY+GM+VP+VLALISFVGVW+ K NV IA+SLLW++SAKTV +FLFGVIPLFVLMGLLVS AGMGKDTYDIA+S L RVRGGLGMATV+AN IFAAITGVSIASATVF+RISVPEMLRYGYKGRFAVGTVAGSSVLGMLIPPSILLI++ALIAEESVGDLFIAG+GPG++LTA++C LIAIMAYGFPN VA P
Sbjct:    1 MTGLEIGVASIVAMLVLIYIGMYVPIVLALISFVGVWIAKDNVNIAVSLLWLASAKTVGNFLFGVIPLFVLMGLLVSAAGMGKDTYDIAHSFLYRVRGGLGMATVVANAIFAAITGVSIASATVFSRISVPEMLRYGYKGRFAVGTVAGSSVLGMLIPPSILLIIYALIAEESVGDLFIAGVGPGLVLTAAYCALIAIMAYGFPNSVAVP 210          
BLAST of mRNA_L-digitata_M_contig101295.1.1 vs. uniprot
Match: A0A1F4GWJ0_9PROT (C4-dicarboxylate ABC transporter permease n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4GWJ0_9PROT)

HSP 1 Score: 271 bits (694), Expect = 1.310e-86
Identity = 140/216 (64.81%), Postives = 181/216 (83.80%), Query Frame = 1
Query:    1 MSGFEIGIISIIAMLLLIYVGMHVPVVLALISFVGVWVIKGNVKIAISLLWISSAKTVADFLFGVIPLFVLMGLLVSTAGMGKDTYDIANSMLRRVRGGLGMATVIANMIFAAITGVSIASATVFTRISVPEMLRYGYKGRFAVGTVAGSSVLGMLIPPSILLIVFALIAEESVGDLFIAGIGPGVLLTASFCGLIAIMAYGFP-NMVAEPGALDR 645
            M+G+EI + S++AML LIY+GMH+   LALIS V VW+++ N  +A +LLWIS+A+T+  FLFGVIPLFVLMGLLV  AGMG+DTYDI   +LRR+RGGLGMATV AN IFA+ITGVS+ASA++F+++SVPEM RYGY  RFAVGTVAGSSVLGMLIPPS+L I++ ++AE+S+GDLFIAGIGPG+LLTA++C  I  MA+ FP +++++P A  R
Sbjct:    1 MAGWEIALWSVVAMLALIYLGMHISTTLALISVVCVWLLRDNFTVAANLLWISAAQTINQFLFGVIPLFVLMGLLVGAAGMGRDTYDIGQLLLRRIRGGLGMATVAANAIFASITGVSVASASIFSKLSVPEMQRYGYNKRFAVGTVAGSSVLGMLIPPSVLFIIYGVVAEQSIGDLFIAGIGPGLLLTAAYCLQILAMAHWFPASVISDPAAYHR 216          
BLAST of mRNA_L-digitata_M_contig101295.1.1 vs. uniprot
Match: A0A2L2LM50_RHIRD (C4-dicarboxylate ABC transporter permease n=2 Tax=Rhizobium radiobacter TaxID=358 RepID=A0A2L2LM50_RHIRD)

HSP 1 Score: 259 bits (663), Expect = 5.450e-82
Identity = 138/207 (66.67%), Postives = 173/207 (83.57%), Query Frame = 1
Query:    1 MSGFEIGIISIIAMLLLIYVGMHVPVVLALISFVGVWVIKGNVKIAISLLWISSAKTVADFLFGVIPLFVLMGLLVSTAGMGKDTYDIANSMLRRVRGGLGMATVIANMIFAAITGVSIASATVFTRISVPEMLRYGYKGRFAVGTVAGSSVLGMLIPPSILLIVFALIAEESVGDLFIAGIGPGVLLTASFCGLIAIMAYGFPNMV 621
            MSG EIG I+ IAM+ LIYVGMHVP+ LAL SFV VWV+KGN+ +A +LL+ S+A TV +++FGV+PLFVLMG  VS AGMG+D Y+IA+  L R+RGGLG+ATV+AN +FA++TG SIASA+VF++I+VPEM  YG++ RFAVGTVAGSSVLGMLIPPSILLI +A++ E+SVGDLFIAGIGPG+LLTA FC  I  +A  FP+ V
Sbjct:    1 MSGLEIGGIAAIAMIFLIYVGMHVPISLALTSFVAVWVLKGNLAVATALLYESAAHTVNEYVFGVVPLFVLMGFFVSAAGMGRDAYEIAHHFLSRLRGGLGIATVVANALFASVTGASIASASVFSKIAVPEMEHYGFRTRFAVGTVAGSSVLGMLIPPSILLIFYAILTEQSVGDLFIAGIGPGLLLTAVFCATIFGLARFFPSFV 207          
BLAST of mRNA_L-digitata_M_contig101295.1.1 vs. uniprot
Match: A0A523L384_9GAMM (TRAP transporter large permease subunit n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523L384_9GAMM)

HSP 1 Score: 253 bits (647), Expect = 1.430e-79
Identity = 129/207 (62.32%), Postives = 174/207 (84.06%), Query Frame = 1
Query:    1 MSGFEIGIISIIAMLLLIYVGMHVPVVLALISFVGVWVIKGNVKIAISLLWISSAKTVADFLFGVIPLFVLMGLLVSTAGMGKDTYDIANSMLRRVRGGLGMATVIANMIFAAITGVSIASATVFTRISVPEMLRYGYKGRFAVGTVAGSSVLGMLIPPSILLIVFALIAEESVGDLFIAGIGPGVLLTASFCGLIAIMAYGFPNMV 621
            M+G E+G+ S++A+L+LIY G++VPV L L+SFV VW+++G+++  I LL ++++ ++ D++FGVIPLFVLMGLLVS +G+G+D YD+AN MLRR+RGGLG+ATV AN  FAAITGVSIASA VFTR+SVPEM+RYGYK RFAVG VAGSSVLGMLIPPS++LI++ALI E+SV D+F AGI PG++L+ ++   I  MAY FP+ +
Sbjct:    1 MTGLEVGLFSVVAILVLIYAGLYVPVALGLVSFVSVWMLRGSIEAPIYLLTLAASNSLEDYVFGVIPLFVLMGLLVSHSGLGRDIYDVANFMLRRLRGGLGVATVAANAAFAAITGVSIASAAVFTRVSVPEMMRYGYKPRFAVGVVAGSSVLGMLIPPSVMLIIYALITEQSVADMFKAGIMPGIVLSLAYTVAIITMAYVFPDYI 207          
BLAST of mRNA_L-digitata_M_contig101295.1.1 vs. uniprot
Match: A0A2E5VAI3_9GAMM (C4-dicarboxylate ABC transporter permease n=2 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A2E5VAI3_9GAMM)

HSP 1 Score: 248 bits (632), Expect = 2.560e-77
Identity = 128/207 (61.84%), Postives = 173/207 (83.57%), Query Frame = 1
Query:    1 MSGFEIGIISIIAMLLLIYVGMHVPVVLALISFVGVWVIKGNVKIAISLLWISSAKTVADFLFGVIPLFVLMGLLVSTAGMGKDTYDIANSMLRRVRGGLGMATVIANMIFAAITGVSIASATVFTRISVPEMLRYGYKGRFAVGTVAGSSVLGMLIPPSILLIVFALIAEESVGDLFIAGIGPGVLLTASFCGLIAIMAYGFPNMV 621
            M+GFEIG+ SI+A+L+LIY G++VPV L L+SFV VW+++G+++  I L+ ++++ ++ D++FGVIPLFVLMGLLVS   +G+D Y++AN +L+R++GGLG+ATV AN  FAAITGVSIASA VFTR+SVPEM+R+GYK RFAVG VAGSSVLGMLIPPS++LI++ALI E+SV DLF AGI PG+LL+ S+   I  MA+ FP+ V
Sbjct:    1 MTGFEIGLFSILAILILIYSGLYVPVALGLVSFVSVWLLRGSLEAPIYLVTLAASNSLEDYIFGVIPLFVLMGLLVSQCELGRDIYEVANHLLKRLKGGLGVATVAANAAFAAITGVSIASAAVFTRVSVPEMIRFGYKPRFAVGVVAGSSVLGMLIPPSVMLIIYALITEQSVADLFTAGIMPGILLSLSYAVAIVSMAFIFPDYV 207          
BLAST of mRNA_L-digitata_M_contig101295.1.1 vs. uniprot
Match: A0A848W0D5_9PROT (TRAP transporter large permease subunit (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W0D5_9PROT)

HSP 1 Score: 241 bits (615), Expect = 5.250e-77
Identity = 125/214 (58.41%), Postives = 166/214 (77.57%), Query Frame = 1
Query:    1 MSGFEIGIISIIAMLLLIYVGMHVPVVLALISFVGVWVIKGNVKIAISLLWISSAKTVADFLFGVIPLFVLMGLLVSTAGMGKDTYDIANSMLRRVRGGLGMATVIANMIFAAITGVSIASATVFTRISVPEMLRYGYKGRFAVGTVAGSSVLGMLIPPSILLIVFALIAEESVGDLFIAGIGPGVLLTASFCGLIAIMAYGFPNMVAEPGALD 642
            M G E+GI S++ ++ LIY+G+++PV L L+SF+GVW+I+GNV IA++LL  S A TV++ +F  +PLF LMGL+VS  G+GKD Y++AN    R+RGGLG+ATV AN IFA+ITG SIASA+VFTR++VPEM R+GYK RF VG VAGSSVLGMLIPPS +LI++A++ E+SVG +FIAGI PG+LL  ++  LI  +AY  PN V    A D
Sbjct:    1 MDGIELGIASVVLIVALIYMGLYIPVALGLVSFLGVWIIRGNVDIAVALLSESIADTVSELVFAAVPLFALMGLIVSKTGLGKDVYEVANFAFFRIRGGLGIATVAANAIFASITGSSIASASVFTRVAVPEMRRFGYKTRFTVGVVAGSSVLGMLIPPSAMLIIYAIVTEQSVGHMFIAGIIPGILLAVAYAILILFLAYLVPNFVGGQEAAD 214          
BLAST of mRNA_L-digitata_M_contig101295.1.1 vs. uniprot
Match: A0A2A4P9A6_9HYPH (C4-dicarboxylate ABC transporter permease n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2A4P9A6_9HYPH)

HSP 1 Score: 246 bits (627), Expect = 1.300e-76
Identity = 130/207 (62.80%), Postives = 167/207 (80.68%), Query Frame = 1
Query:    1 MSGFEIGIISIIAMLLLIYVGMHVPVVLALISFVGVWVIKGNVKIAISLLWISSAKTVADFLFGVIPLFVLMGLLVSTAGMGKDTYDIANSMLRRVRGGLGMATVIANMIFAAITGVSIASATVFTRISVPEMLRYGYKGRFAVGTVAGSSVLGMLIPPSILLIVFALIAEESVGDLFIAGIGPGVLLTASFCGLIAIMAYGFPNMV 621
            M G EIGIIS+IA++L +Y GMHV VVL+ +SFV +WV KG   +A++LL  ++ ++++ ++FGV+PLFVLMGLLVS A +GKDT+  A+  L +V GGLG+ATVIAN  FAAITG+SIASA VFTR++VPEMLR+GY  RFAVG VAGSSVLGMLIPPS+LLIV+AL+AE+SVG +F+AGI PG++L  +FCGLI  MA   P  V
Sbjct:    1 MXGIEIGIISVIAIVLFVYAGMHVAVVLSAVSFVSLWVFKGKFSLAVTLLTQAATESISSYVFGVVPLFVLMGLLVSLADIGKDTFRAAHHFLHKVLGGLGIATVIANTAFAAITGISIASAAVFTRVAVPEMLRFGYTPRFAVGVVAGSSVLGMLIPPSLLLIVYALVAEQSVGSMFVAGIIPGLMLALAFCGLIVAMARFSPRQV 207          
BLAST of mRNA_L-digitata_M_contig101295.1.1 vs. uniprot
Match: A0A7X4EX40_9PROT (TRAP transporter large permease subunit n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7X4EX40_9PROT)

HSP 1 Score: 245 bits (626), Expect = 1.930e-76
Identity = 128/215 (59.53%), Postives = 173/215 (80.47%), Query Frame = 1
Query:    1 MSGFEIGIISIIAMLLLIYVGMHVPVVLALISFVGVWVIKGNVKIAISLLWISSAKTVADFLFGVIPLFVLMGLLVSTAGMGKDTYDIANSMLRRVRGGLGMATVIANMIFAAITGVSIASATVFTRISVPEMLRYGYKGRFAVGTVAGSSVLGMLIPPSILLIVFALIAEESVGDLFIAGIGPGVLLTASFCGLIAIMAYGFPNMVAEPGALDR 645
            M+GFEIG++S++A+L+LIY GM+VPV L ++SF+ VW+++G+++  I LL ++++ ++ D++FGVIPLFVLMGLLVS A +G+D Y +AN+ LRR++GGLG+ATV AN  FAAITGVSIASA VFTR+SVPEMLR+GY+ RFAVG VAGSSVLGMLIPPS++LI++ALI E+SV DLF AGI PG+LL+ ++   I  MA   P  V    +L  
Sbjct:    1 MTGFEIGLLSVLAILVLIYSGMYVPVALGVVSFISVWLLRGSLEAPIYLLTLAASNSLEDYIFGVIPLFVLMGLLVSQAELGRDIYQVANAALRRLKGGLGVATVAANAAFAAITGVSIASAAVFTRVSVPEMLRFGYRPRFAVGVVAGSSVLGMLIPPSVMLIIYALITEQSVADLFTAGIVPGILLSLAYAVAIVAMAQFIPAYVGGQDSLGE 215          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101295.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7PIR8_9PROT3.290e-12189.77C4-dicarboxylate ABC transporter permease n=4 Tax=... [more]
A0A2S6QFT3_9PROT2.380e-11182.38C4-dicarboxylate TRAP transporter large permease p... [more]
A0A848W3X2_9PROT9.880e-11183.33TRAP transporter large permease n=1 Tax=Alphaprote... [more]
A0A1F4GWJ0_9PROT1.310e-8664.81C4-dicarboxylate ABC transporter permease n=2 Tax=... [more]
A0A2L2LM50_RHIRD5.450e-8266.67C4-dicarboxylate ABC transporter permease n=2 Tax=... [more]
A0A523L384_9GAMM1.430e-7962.32TRAP transporter large permease subunit n=1 Tax=Ga... [more]
A0A2E5VAI3_9GAMM2.560e-7761.84C4-dicarboxylate ABC transporter permease n=2 Tax=... [more]
A0A848W0D5_9PROT5.250e-7758.41TRAP transporter large permease subunit (Fragment)... [more]
A0A2A4P9A6_9HYPH1.300e-7662.80C4-dicarboxylate ABC transporter permease n=1 Tax=... [more]
A0A7X4EX40_9PROT1.930e-7659.53TRAP transporter large permease subunit n=1 Tax=Pr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101295contigL-digitata_M_contig101295:279..923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1449350.OCH239_06245
PFAMsDctM
Model size645
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.93e-73
EggNOG OGsCOG1593@1|root,COG1593@2|Bacteria,1MU0F@1224|Proteobacteria,2TRM1@28211|Alphaproteobacteria,4KNR5@93682|Roseivivax
DescriptionC4-dicarboxylate ABC transporter permease
Cds size645
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406616.905804-CDS-L-digitata_M_contig101295:278..9231682406616.905804-CDS-L-digitata_M_contig101295:278..923Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101295 279..923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101295.1.1prot_L-digitata_M_contig101295.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101295 279..923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101295.1.1

>prot_L-digitata_M_contig101295.1.1 ID=prot_L-digitata_M_contig101295.1.1|Name=mRNA_L-digitata_M_contig101295.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=215bp
MSGFEIGIISIIAMLLLIYVGMHVPVVLALISFVGVWVIKGNVKIAISLL
WISSAKTVADFLFGVIPLFVLMGLLVSTAGMGKDTYDIANSMLRRVRGGL
GMATVIANMIFAAITGVSIASATVFTRISVPEMLRYGYKGRFAVGTVAGS
SVLGMLIPPSILLIVFALIAEESVGDLFIAGIGPGVLLTASFCGLIAIMA
YGFPNMVAEPGALDR
back to top

mRNA from alignment at L-digitata_M_contig101295:279..923+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101295.1.1 ID=mRNA_L-digitata_M_contig101295.1.1|Name=mRNA_L-digitata_M_contig101295.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=645bp|location=Sequence derived from alignment at L-digitata_M_contig101295:279..923+ (Laminaria digitata LdigPH10_18mv male)
ATGAGCGGCTTCGAAATCGGAATCATTTCAATTATAGCGATGCTGCTGCT GATCTATGTCGGCATGCATGTGCCTGTTGTGCTGGCTCTGATCTCGTTCG TCGGGGTCTGGGTGATCAAGGGCAATGTCAAAATTGCCATTAGCCTGCTT TGGATATCATCGGCGAAAACGGTCGCGGATTTCCTGTTTGGCGTTATTCC ACTTTTCGTCCTGATGGGGCTGCTCGTCAGTACAGCCGGGATGGGAAAAG ATACTTACGACATTGCCAACAGCATGCTGCGCAGGGTGCGCGGTGGTCTG GGCATGGCGACGGTTATTGCGAACATGATTTTTGCCGCGATCACCGGTGT CTCGATTGCTTCGGCAACCGTGTTCACACGTATTTCCGTGCCCGAGATGC TGCGCTATGGCTACAAGGGCCGCTTTGCAGTTGGGACCGTCGCAGGTTCG TCGGTGCTCGGGATGCTGATACCGCCCTCGATCCTGCTGATCGTGTTTGC GTTGATCGCCGAAGAATCCGTGGGTGATCTGTTCATCGCGGGTATCGGGC CGGGTGTTCTGCTGACCGCCAGTTTCTGTGGTCTCATCGCGATCATGGCC TATGGGTTCCCGAATATGGTCGCGGAACCGGGTGCGCTCGATCGC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101295:279..923+

>mRNA_L-digitata_M_contig101295.1.1 ID=mRNA_L-digitata_M_contig101295.1.1|Name=mRNA_L-digitata_M_contig101295.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=645bp|location=Sequence derived from alignment at L-digitata_M_contig101295:279..923+ (Laminaria digitata LdigPH10_18mv male)
ATGAGCGGCTTCGAAATCGGAATCATTTCAATTATAGCGATGCTGCTGCT
GATCTATGTCGGCATGCATGTGCCTGTTGTGCTGGCTCTGATCTCGTTCG
TCGGGGTCTGGGTGATCAAGGGCAATGTCAAAATTGCCATTAGCCTGCTT
TGGATATCATCGGCGAAAACGGTCGCGGATTTCCTGTTTGGCGTTATTCC
ACTTTTCGTCCTGATGGGGCTGCTCGTCAGTACAGCCGGGATGGGAAAAG
ATACTTACGACATTGCCAACAGCATGCTGCGCAGGGTGCGCGGTGGTCTG
GGCATGGCGACGGTTATTGCGAACATGATTTTTGCCGCGATCACCGGTGT
CTCGATTGCTTCGGCAACCGTGTTCACACGTATTTCCGTGCCCGAGATGC
TGCGCTATGGCTACAAGGGCCGCTTTGCAGTTGGGACCGTCGCAGGTTCG
TCGGTGCTCGGGATGCTGATACCGCCCTCGATCCTGCTGATCGTGTTTGC
GTTGATCGCCGAAGAATCCGTGGGTGATCTGTTCATCGCGGGTATCGGGC
CGGGTGTTCTGCTGACCGCCAGTTTCTGTGGTCTCATCGCGATCATGGCC
TATGGGTTCCCGAATATGGTCGCGGAACCGGGTGCGCTCGATCGC
back to top