mRNA_L-digitata_M_contig101287.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101287.1.1
Unique NamemRNA_L-digitata_M_contig101287.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101287.1.1 vs. uniprot
Match: A0A2N5MDY4_9BACI (Uncharacterized protein n=1 Tax=Bacillus sp. V5-8f TaxID=2053044 RepID=A0A2N5MDY4_9BACI)

HSP 1 Score: 49.7 bits (117), Expect = 4.050e-5
Identity = 19/49 (38.78%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:   67 VNVRDRPSSKSNVLGTFRAGTSVAVLDTNRGWIQVSDGTRTGWVYERFL 213
            +N+R++PS+ S VLGT + G  V  +    GW +VS   + GWV  ++L
Sbjct:   41 LNMREKPSTSSKVLGTLKKGQVVTAIQQQSGWTRVSSSGKNGWVSSKYL 89
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BLAST of mRNA_L-digitata_M_contig101287.1.1 vs. uniprot
Match: A0A3E2JBE4_9BACI (Uncharacterized protein n=1 Tax=Bacillus sp. V59.32b TaxID=1758642 RepID=A0A3E2JBE4_9BACI)

HSP 1 Score: 49.3 bits (116), Expect = 5.590e-5
Identity = 23/72 (31.94%), Postives = 39/72 (54.17%), Query Frame = 1 
Query:   16 VATPVAPARDRMIVTSG------VNVRDRPSSKSNVLGTFRAGTSVAVLDTNRGWIQVSDGTRTGWVYERFL 213
            V T VAP++     T        +NVR++P++ S V+G +  G +V +     GW +V  G +TGWV  +++
Sbjct:   18 VFTSVAPSKQVYAATQAKVNATTLNVREKPTTSSKVIGKYTKGQTVTITQQQNGWSKVPVGKKTGWVSSKYV 89
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BLAST of mRNA_L-digitata_M_contig101287.1.1 vs. uniprot
Match: A0A380Y1S8_CYTFI (N-acetylmuramoyl-L-alanine amidase n=14 Tax=Bacillaceae TaxID=186817 RepID=A0A380Y1S8_CYTFI)

HSP 1 Score: 49.3 bits (116), Expect = 5.620e-5
Identity = 18/54 (33.33%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   52 IVTSGVNVRDRPSSKSNVLGTFRAGTSVAVLDTNRGWIQVSDGTRTGWVYERFL 213
            I  + +NVR++PS +S+++G   +G +VAVL  +  W ++S    TGW+  +++
Sbjct:  181 ITANSLNVRNKPSLQSDIIGKLNSGETVAVLSQDDSWTEISFSGNTGWISSQYI 234
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101287.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2N5MDY4_9BACI4.050e-538.78Uncharacterized protein n=1 Tax=Bacillus sp. V5-8f... [more]
A0A3E2JBE4_9BACI5.590e-531.94Uncharacterized protein n=1 Tax=Bacillus sp. V59.3... [more]
A0A380Y1S8_CYTFI5.620e-533.33N-acetylmuramoyl-L-alanine amidase n=14 Tax=Bacill... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101287contigL-digitata_M_contig101287:11..238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog189426.PODO_27055
PFAMsAmidase_3,SH3_3
Model size228
Max annot lvl91061|Bacilli
KEGG rclassRC00064,RC00141
KEGG koko:K01448
KEGG ReactionR04112
KEGG Pathwayko01503,map01503
KEGG ModuleM00727
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.92e-07
EggNOG OGsCOG0860@1|root,COG3103@1|root,COG0860@2|Bacteria,COG3103@2|Bacteria,1UYPW@1239|Firmicutes,4HBVT@91061|Bacilli,26UYQ@186822|Paenibacillaceae
EC3.5.1.28
DescriptionAmi_3
Cds size228
COG categoryMT
BRITEko00000,ko00001,ko00002,ko01000,ko01011,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406616.7713704-CDS-L-digitata_M_contig101287:10..2381682406616.7713704-CDS-L-digitata_M_contig101287:10..238Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101287 11..238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101287.1.1prot_L-digitata_M_contig101287.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101287 11..238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101287.1.1

>prot_L-digitata_M_contig101287.1.1 ID=prot_L-digitata_M_contig101287.1.1|Name=mRNA_L-digitata_M_contig101287.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=76bp
TTPEAVATPVAPARDRMIVTSGVNVRDRPSSKSNVLGTFRAGTSVAVLDT
NRGWIQVSDGTRTGWVYERFLRPSN*
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mRNA from alignment at L-digitata_M_contig101287:11..238+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101287.1.1 ID=mRNA_L-digitata_M_contig101287.1.1|Name=mRNA_L-digitata_M_contig101287.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=228bp|location=Sequence derived from alignment at L-digitata_M_contig101287:11..238+ (Laminaria digitata LdigPH10_18mv male)
ACGACACCTGAAGCCGTCGCCACGCCGGTCGCGCCGGCACGTGACCGCAT
GATCGTTACGTCCGGCGTCAATGTGCGTGATCGGCCGAGCAGCAAGAGCA
ATGTGCTGGGCACCTTCCGCGCCGGCACGTCGGTTGCGGTACTCGACACC
AACCGGGGCTGGATCCAGGTCAGTGACGGGACGCGGACCGGGTGGGTCTA
TGAACGCTTCCTGCGGCCCTCGAACTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101287:11..238+

>mRNA_L-digitata_M_contig101287.1.1 ID=mRNA_L-digitata_M_contig101287.1.1|Name=mRNA_L-digitata_M_contig101287.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=228bp|location=Sequence derived from alignment at L-digitata_M_contig101287:11..238+ (Laminaria digitata LdigPH10_18mv male)
ACGACACCTGAAGCCGTCGCCACGCCGGTCGCGCCGGCACGTGACCGCAT
GATCGTTACGTCCGGCGTCAATGTGCGTGATCGGCCGAGCAGCAAGAGCA
ATGTGCTGGGCACCTTCCGCGCCGGCACGTCGGTTGCGGTACTCGACACC
AACCGGGGCTGGATCCAGGTCAGTGACGGGACGCGGACCGGGTGGGTCTA
TGAACGCTTCCTGCGGCCCTCGAACTAG
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