mRNA_L-digitata_M_contig101139.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101139.1.1
Unique NamemRNA_L-digitata_M_contig101139.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101139.1.1 vs. uniprot
Match: A0A7V7BF73_9PROT (UvrABC system protein C n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7V7BF73_9PROT)

HSP 1 Score: 514 bits (1323), Expect = 9.090e-178
Identity = 258/302 (85.43%), Postives = 284/302 (94.04%), Query Frame = 1 
Query:    1 PKSGPDVIRAFVKNLPSSPGVYRMIDEAGEVIYVGKARSLKARVTNYTRPEALEVRLQRMVASTHSMEFVRTETEAEALLLEANLIKRLRPRYNVLLRDDKSFPYILIATEHEAPELMKHRGTRRRQGHYFGPFASALAVKRTINAMQRAFLLRTCSDSFYKARRRPCMLHQIKRCAAPCTGEISIKDYAQLAEEARQFLSGRSKSVQDHLSRDMNDAAERLDFEQAARLRDRLSALALIQSGGDVAARTVEEADVFAIHQDAGQFLIQVFFFRAFQNWGNHAFRPRADSSLSEAEVLEAFI 906
            P SGP+VIRAFVK LP++PGVYRM+DE GEV+YVGKAR+LKARVTNYTRPE L+VRLQ+M+A+T SMEFVRTETEAEALLLEANLIKRLRPR+NVLLRDDKSFPYILIAT+HEAPELMKHRG RRRQGHYFGPFASALAVKRTI A+QRAFLLRTCSDSFYKAR RPCML+QIKRC+APCTGEIS  DYA+L E+ARQFLSG+SKSVQDHL+RDMN AAERLDFEQAARLRDRLSALALIQS GDV AR+VEEADVFAI  +AGQF +QVFFFRA QNWGN+A+RPRAD+SLS+AEVLEAFI
Sbjct:    7 PLSGPEVIRAFVKTLPAAPGVYRMLDETGEVVYVGKARNLKARVTNYTRPEGLDVRLQKMIAATRSMEFVRTETEAEALLLEANLIKRLRPRFNVLLRDDKSFPYILIATDHEAPELMKHRGVRRRQGHYFGPFASALAVKRTIAALQRAFLLRTCSDSFYKARTRPCMLYQIKRCSAPCTGEISPADYARLVEDARQFLSGKSKSVQDHLARDMNAAAERLDFEQAARLRDRLSALALIQSQGDVVARSVEEADVFAIAHEAGQFCVQVFFFRAHQNWGNYAYRPRADASLSDAEVLEAFI 308
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BLAST of mRNA_L-digitata_M_contig101139.1.1 vs. uniprot
Match: A0A1Q3YZU4_9HYPH (UvrABC system protein C n=4 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1Q3YZU4_9HYPH)

HSP 1 Score: 496 bits (1277), Expect = 7.920e-171
Identity = 248/301 (82.39%), Postives = 276/301 (91.69%), Query Frame = 1 
Query:    4 KSGPDVIRAFVKNLPSSPGVYRMIDEAGEVIYVGKARSLKARVTNYTRPEALEVRLQRMVASTHSMEFVRTETEAEALLLEANLIKRLRPRYNVLLRDDKSFPYILIATEHEAPELMKHRGTRRRQGHYFGPFASALAVKRTINAMQRAFLLRTCSDSFYKARRRPCMLHQIKRCAAPCTGEISIKDYAQLAEEARQFLSGRSKSVQDHLSRDMNDAAERLDFEQAARLRDRLSALALIQSGGDVAARTVEEADVFAIHQDAGQFLIQVFFFRAFQNWGNHAFRPRADSSLSEAEVLEAFI 906
            ++G D+IRAFVK LPS+PGVYRMIDEAGEV+YVGKARSLKARVTNYTRPE LEVRLQRM+A+T +MEFVRTETEAEALLLEANLIKRL+PR+NVLLRDDKSFPYILIATEHEAPELMKHRGTRRRQGHYFGPFASALAVKRTI A+Q+AFLLRTCSDSFYKAR RPCMLHQIKRC+APCTGEIS+  YA+L  EARQFLSGRSKSVQDHL  +MN AA  LDFE+AA LRDRLSALAL+QS GDV AR +EEADVFAI  +AGQF +QVFFFRA QNWGN+A+RP+AD +L++ EVLEAF+
Sbjct:    6 ETGADIIRAFVKTLPSAPGVYRMIDEAGEVMYVGKARSLKARVTNYTRPEGLEVRLQRMIAATRTMEFVRTETEAEALLLEANLIKRLKPRFNVLLRDDKSFPYILIATEHEAPELMKHRGTRRRQGHYFGPFASALAVKRTITALQKAFLLRTCSDSFYKARTRPCMLHQIKRCSAPCTGEISLAAYAELVGEARQFLSGRSKSVQDHLQAEMNQAAAALDFERAALLRDRLSALALVQSQGDVVARGIEEADVFAIAHEAGQFCVQVFFFRAHQNWGNYAYRPKADPTLTDTEVLEAFM 306
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BLAST of mRNA_L-digitata_M_contig101139.1.1 vs. uniprot
Match: A0A0Q7E4P9_9HYPH (UvrABC system protein C n=7 Tax=Hyphomicrobiales TaxID=356 RepID=A0A0Q7E4P9_9HYPH)

HSP 1 Score: 493 bits (1270), Expect = 1.250e-169
Identity = 246/302 (81.46%), Postives = 277/302 (91.72%), Query Frame = 1 
Query:    1 PKSGPDVIRAFVKNLPSSPGVYRMIDEAGEVIYVGKARSLKARVTNYTRPEALEVRLQRMVASTHSMEFVRTETEAEALLLEANLIKRLRPRYNVLLRDDKSFPYILIATEHEAPELMKHRGTRRRQGHYFGPFASALAVKRTINAMQRAFLLRTCSDSFYKARRRPCMLHQIKRCAAPCTGEISIKDYAQLAEEARQFLSGRSKSVQDHLSRDMNDAAERLDFEQAARLRDRLSALALIQSGGDVAARTVEEADVFAIHQDAGQFLIQVFFFRAFQNWGNHAFRPRADSSLSEAEVLEAFI 906
            P SG +VI+ FVK LP SPGVYRM DEAGEV+YVGKAR+LKARVTNYTRPE L++R++RM+ +T +MEFVRTETEAEALLLEANLIKRL+PR+NVLLRDDKSFPYILIATEHEA EL KHRG+RR +GHYFGPFASALAVKRTI A+QRAFLLRTCSDSFYKAR RPCMLHQIKRC+APCTGEIS+ DY +L EEARQFLSG+SKSVQDHL+ DMN AAE LDFE+AA LRDRLSALAL+QS GDVA+++VEEADVFAI  +AGQF +QVFFFRA+QNWGNHAFRPRAD+SLS+AEVLEAFI
Sbjct:   15 PISGAEVIKTFVKTLPPSPGVYRMFDEAGEVVYVGKARNLKARVTNYTRPEGLDIRIRRMIEATRNMEFVRTETEAEALLLEANLIKRLKPRFNVLLRDDKSFPYILIATEHEAAELKKHRGSRRIKGHYFGPFASALAVKRTITALQRAFLLRTCSDSFYKARTRPCMLHQIKRCSAPCTGEISMADYNELVEEARQFLSGKSKSVQDHLAADMNVAAENLDFERAALLRDRLSALALVQSQGDVASKSVEEADVFAIGHEAGQFCVQVFFFRAYQNWGNHAFRPRADASLSDAEVLEAFI 316
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BLAST of mRNA_L-digitata_M_contig101139.1.1 vs. uniprot
Match: A0A433XLL7_9HYPH (UvrABC system protein C n=2 Tax=Arsenicitalea aurantiaca TaxID=1783274 RepID=A0A433XLL7_9HYPH)

HSP 1 Score: 491 bits (1264), Expect = 1.080e-168
Identity = 240/301 (79.73%), Postives = 274/301 (91.03%), Query Frame = 1 
Query:    4 KSGPDVIRAFVKNLPSSPGVYRMIDEAGEVIYVGKARSLKARVTNYTRPEALEVRLQRMVASTHSMEFVRTETEAEALLLEANLIKRLRPRYNVLLRDDKSFPYILIATEHEAPELMKHRGTRRRQGHYFGPFASALAVKRTINAMQRAFLLRTCSDSFYKARRRPCMLHQIKRCAAPCTGEISIKDYAQLAEEARQFLSGRSKSVQDHLSRDMNDAAERLDFEQAARLRDRLSALALIQSGGDVAARTVEEADVFAIHQDAGQFLIQVFFFRAFQNWGNHAFRPRADSSLSEAEVLEAFI 906
            +SGPD+IR FV+ LPS+PGVYRM+D AG+VIYVGKARSL++RVTNYTRPE L VR+QRM+ +TH+MEF RTETE+EALLLEANLIKRL+PR+NVLLRDDKSFPYILIAT+HEAPEL+KHRG+RRR GHYFGPFASA AVKRTI A+Q+AFLLR CSDSFY AR RPC+LHQIKRC+ PCTGEIS  DYA+L  EAR FLSG+SKSVQDHL+RDMN AAE LDFE+AA LRDRLSALALIQS GDV+AR+VEEAD+FAIH + GQF +QVFFFRAFQNWGNHAFRPRAD+ L++AEVLEAFI
Sbjct:   18 RSGPDLIREFVRTLPSAPGVYRMLDAAGDVIYVGKARSLRSRVTNYTRPEGLPVRIQRMIVATHAMEFTRTETESEALLLEANLIKRLKPRFNVLLRDDKSFPYILIATDHEAPELLKHRGSRRRPGHYFGPFASATAVKRTITALQKAFLLRNCSDSFYAARTRPCLLHQIKRCSGPCTGEISHADYAELVTEARDFLSGKSKSVQDHLARDMNAAAEALDFERAALLRDRLSALALIQSQGDVSARSVEEADIFAIHHEGGQFCVQVFFFRAFQNWGNHAFRPRADAELTDAEVLEAFI 318
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BLAST of mRNA_L-digitata_M_contig101139.1.1 vs. uniprot
Match: UPI000FDB354A (excinuclease ABC subunit UvrC n=2 Tax=Devosia TaxID=46913 RepID=UPI000FDB354A)

HSP 1 Score: 488 bits (1255), Expect = 2.060e-167
Identity = 238/299 (79.60%), Postives = 274/299 (91.64%), Query Frame = 1 
Query:   10 GPDVIRAFVKNLPSSPGVYRMIDEAGEVIYVGKARSLKARVTNYTRPEALEVRLQRMVASTHSMEFVRTETEAEALLLEANLIKRLRPRYNVLLRDDKSFPYILIATEHEAPELMKHRGTRRRQGHYFGPFASALAVKRTINAMQRAFLLRTCSDSFYKARRRPCMLHQIKRCAAPCTGEISIKDYAQLAEEARQFLSGRSKSVQDHLSRDMNDAAERLDFEQAARLRDRLSALALIQSGGDVAARTVEEADVFAIHQDAGQFLIQVFFFRAFQNWGNHAFRPRADSSLSEAEVLEAFI 906
            GPDVIRAFV+ LP++PGVYRM+D +GEVIYVGKARSLKARV+NYTRPEAL VR+QRMVA+T SMEFVRTETE+EALLLEANLIKRL+PR+NVLLRDDKSFPYILIAT+HEAPELMKHRGTRRRQGHYFGPFAS  AV RTI ++Q+AFLLR CSDSFY AR RPC++HQIKRC+ PCT EIS++DY +L  EA++FLSGRS+SV+DHL +DMN+AAE LDFE+AA LRDRLSALALIQS GD  A++VEEADVFAIH + GQF +QVFFFRAFQNWGNHAFRPRAD+S+S+AEVLEAF+
Sbjct:   14 GPDVIRAFVRTLPAAPGVYRMLDSSGEVIYVGKARSLKARVSNYTRPEALPVRIQRMVAATCSMEFVRTETESEALLLEANLIKRLKPRFNVLLRDDKSFPYILIATDHEAPELMKHRGTRRRQGHYFGPFASVTAVNRTIASLQKAFLLRNCSDSFYAARTRPCLMHQIKRCSGPCTREISLQDYGELVHEAKEFLSGRSQSVRDHLQKDMNEAAEALDFERAALLRDRLSALALIQSQGDATAKSVEEADVFAIHHEGGQFCVQVFFFRAFQNWGNHAFRPRADASMSDAEVLEAFV 312
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BLAST of mRNA_L-digitata_M_contig101139.1.1 vs. uniprot
Match: A0A0F5LWH9_9HYPH (UvrABC system protein C n=2 Tax=Devosia limi DSM 17137 TaxID=1121477 RepID=A0A0F5LWH9_9HYPH)

HSP 1 Score: 479 bits (1233), Expect = 5.140e-164
Identity = 237/300 (79.00%), Postives = 270/300 (90.00%), Query Frame = 1 
Query:    7 SGPDVIRAFVKNLPSSPGVYRMIDEAGEVIYVGKARSLKARVTNYTRPEALEVRLQRMVASTHSMEFVRTETEAEALLLEANLIKRLRPRYNVLLRDDKSFPYILIATEHEAPELMKHRGTRRRQGHYFGPFASALAVKRTINAMQRAFLLRTCSDSFYKARRRPCMLHQIKRCAAPCTGEISIKDYAQLAEEARQFLSGRSKSVQDHLSRDMNDAAERLDFEQAARLRDRLSALALIQSGGDVAARTVEEADVFAIHQDAGQFLIQVFFFRAFQNWGNHAFRPRADSSLSEAEVLEAFI 906
            SG +VI+AFV+ LP++PGVYRMID  GEV+YVGKAR+LKARVTNYTRPEALE RLQRM+A+T +MEFVRTETE+EALLLEANLIKRL+PR+NVLLRDDKSFPYILIAT+H APELMKHRGTRRR+GHYFGPFAS  AV RTI ++Q+AFLLR CSDSFY AR RPC+ HQIKRCAAPCTGEIS+  Y +L EEAR+FLSGRS+ V+DH+  +MN AAE+LDFE+AA LRDRLSALALIQS GD  A++VEEADVFAIH + GQF +QVFFFRAFQNWGNHAFRPRADSSLS+AEVLEAFI
Sbjct:   19 SGHEVIKAFVRTLPAAPGVYRMIDAEGEVMYVGKARNLKARVTNYTRPEALETRLQRMIAATVTMEFVRTETESEALLLEANLIKRLKPRFNVLLRDDKSFPYILIATDHPAPELMKHRGTRRRKGHYFGPFASVTAVNRTIASLQKAFLLRNCSDSFYAARTRPCLQHQIKRCAAPCTGEISLSGYGELVEEAREFLSGRSQGVRDHMQAEMNTAAEQLDFERAALLRDRLSALALIQSQGDATAKSVEEADVFAIHHEGGQFCVQVFFFRAFQNWGNHAFRPRADSSLSDAEVLEAFI 318
[Close]
BLAST of mRNA_L-digitata_M_contig101139.1.1 vs. uniprot
Match: A0A0F5FEE8_9HYPH (UvrABC system protein C n=4 Tax=Hyphomicrobiales TaxID=356 RepID=A0A0F5FEE8_9HYPH)

HSP 1 Score: 474 bits (1221), Expect = 2.450e-162
Identity = 236/302 (78.15%), Postives = 269/302 (89.07%), Query Frame = 1 
Query:    1 PKSGPDVIRAFVKNLPSSPGVYRMIDEAGEVIYVGKARSLKARVTNYTRPEALEVRLQRMVASTHSMEFVRTETEAEALLLEANLIKRLRPRYNVLLRDDKSFPYILIATEHEAPELMKHRGTRRRQGHYFGPFASALAVKRTINAMQRAFLLRTCSDSFYKARRRPCMLHQIKRCAAPCTGEISIKDYAQLAEEARQFLSGRSKSVQDHLSRDMNDAAERLDFEQAARLRDRLSALALIQSGGDVAARTVEEADVFAIHQDAGQFLIQVFFFRAFQNWGNHAFRPRADSSLSEAEVLEAFI 906
            P+SGPDVIRAFV+ LP++PGVYRM+D  GEV+YVGKAR+LKARVTNYTRPE LE+RLQRM+AST SMEFVRTETE+EALLLEAN+IKRL+PRYNVLLRDDKSFPYILIAT+HEAPEL KHRG+RRR GHYFGPFASA AV RTI ++Q+AFLLR CSDSFY AR RPC+ +QIKRCA PCT EIS+  Y +L E+ARQFLSG+S+SVQ HL  DMN AAE LDFE+AA LRDRLSALALIQS GD  AR+VEEADVFAIH + GQF +QVFFFRAFQNWGN+ +RPRAD+SL++AEVLEAFI
Sbjct:    8 PQSGPDVIRAFVRTLPAAPGVYRMLDAQGEVMYVGKARNLKARVTNYTRPEGLELRLQRMIASTVSMEFVRTETESEALLLEANMIKRLKPRYNVLLRDDKSFPYILIATDHEAPELTKHRGSRRRPGHYFGPFASATAVGRTIASLQKAFLLRNCSDSFYAARTRPCLQYQIKRCAGPCTREISLDAYGELVEDARQFLSGKSRSVQQHLQADMNKAAEDLDFERAALLRDRLSALALIQSQGDATARSVEEADVFAIHHEGGQFCVQVFFFRAFQNWGNYPYRPRADASLTDAEVLEAFI 309
[Close]
BLAST of mRNA_L-digitata_M_contig101139.1.1 vs. uniprot
Match: A0A085EWH2_9HYPH (UvrABC system protein C n=17 Tax=Devosiaceae TaxID=2831106 RepID=A0A085EWH2_9HYPH)

HSP 1 Score: 474 bits (1221), Expect = 3.260e-162
Identity = 236/302 (78.15%), Postives = 272/302 (90.07%), Query Frame = 1 
Query:    1 PKSGPDVIRAFVKNLPSSPGVYRMIDEAGEVIYVGKARSLKARVTNYTRPEALEVRLQRMVASTHSMEFVRTETEAEALLLEANLIKRLRPRYNVLLRDDKSFPYILIATEHEAPELMKHRGTRRRQGHYFGPFASALAVKRTINAMQRAFLLRTCSDSFYKARRRPCMLHQIKRCAAPCTGEISIKDYAQLAEEARQFLSGRSKSVQDHLSRDMNDAAERLDFEQAARLRDRLSALALIQSGGDVAARTVEEADVFAIHQDAGQFLIQVFFFRAFQNWGNHAFRPRADSSLSEAEVLEAFI 906
            P SG +VIRAFV+ LP++PGVYRM+D  GEV+YVGKAR+LKARVTNYTRPEALEVRLQRM+A+T +MEFVRTETE+EALLLEAN+IKRL+PR+NVLLRDDKSFPYILIAT+HEAPEL KHRGTRRR+GHYFGPFASA AV RTI ++Q+AFLLR CSDSFY AR RPC+  QIKRCAAPCT EIS++ Y +L E+ARQFLSG+S+ V+DHL RDMN AAE+LDFE+AA LRDRLSALALIQS GD  A+TVEEADVFAIH + GQF +QVFFFRAFQNWGN+ +RPRAD+SLS+AEVLEAFI
Sbjct:   11 PPSGHEVIRAFVRTLPAAPGVYRMLDAEGEVMYVGKARNLKARVTNYTRPEALEVRLQRMIAATVTMEFVRTETESEALLLEANMIKRLKPRFNVLLRDDKSFPYILIATDHEAPELTKHRGTRRRKGHYFGPFASATAVGRTIASLQKAFLLRNCSDSFYAARTRPCLQFQIKRCAAPCTREISLEGYGELVEDARQFLSGKSQGVRDHLQRDMNQAAEQLDFERAALLRDRLSALALIQSQGDGTAKTVEEADVFAIHHEGGQFCVQVFFFRAFQNWGNYPYRPRADASLSDAEVLEAFI 312
[Close]
BLAST of mRNA_L-digitata_M_contig101139.1.1 vs. uniprot
Match: UPI000D3CA352 (excinuclease ABC subunit UvrC n=1 Tax=Devosia submarina TaxID=1173082 RepID=UPI000D3CA352)

HSP 1 Score: 474 bits (1220), Expect = 3.700e-162
Identity = 231/301 (76.74%), Postives = 274/301 (91.03%), Query Frame = 1 
Query:    4 KSGPDVIRAFVKNLPSSPGVYRMIDEAGEVIYVGKARSLKARVTNYTRPEALEVRLQRMVASTHSMEFVRTETEAEALLLEANLIKRLRPRYNVLLRDDKSFPYILIATEHEAPELMKHRGTRRRQGHYFGPFASALAVKRTINAMQRAFLLRTCSDSFYKARRRPCMLHQIKRCAAPCTGEISIKDYAQLAEEARQFLSGRSKSVQDHLSRDMNDAAERLDFEQAARLRDRLSALALIQSGGDVAARTVEEADVFAIHQDAGQFLIQVFFFRAFQNWGNHAFRPRADSSLSEAEVLEAFI 906
            KSG +VIR FV+ LP++PGVYRM+D  GEV+YVGKAR+LKARVTNYTRP+ALE+RLQRM+A+T SMEFVRTETE+EALLLEAN+IKRL+PR+NVLLRDDKSFPYILIAT+HEAPEL KHRGTRRRQGHYFGPFASA AV RTI ++Q+AFLLR CSDSFY AR RPC++HQIKRCA PCT EIS++ Y +L E+ARQFLSG+S+SV+DHL R+MN+AAE+LDFE+AA LRDRLSALAL+QS GD  A++VEEADVFAIH + GQF +QVFFFRA+QNWGN+ +RPRAD+SL++AEVLEAFI
Sbjct:   10 KSGHEVIREFVRTLPAAPGVYRMLDAQGEVMYVGKARNLKARVTNYTRPDALELRLQRMIAATVSMEFVRTETESEALLLEANMIKRLKPRFNVLLRDDKSFPYILIATDHEAPELTKHRGTRRRQGHYFGPFASATAVGRTIASLQKAFLLRNCSDSFYAARTRPCLMHQIKRCAGPCTREISLEGYGELVEDARQFLSGKSQSVRDHLQREMNEAAEQLDFERAALLRDRLSALALVQSQGDATAKSVEEADVFAIHHEGGQFCVQVFFFRAYQNWGNYPYRPRADASLTDAEVLEAFI 310
[Close]
BLAST of mRNA_L-digitata_M_contig101139.1.1 vs. uniprot
Match: A0A1E4G0U3_9HYPH (UvrABC system protein C n=1 Tax=Pelagibacterium sp. SCN 64-44 TaxID=1660125 RepID=A0A1E4G0U3_9HYPH)

HSP 1 Score: 473 bits (1217), Expect = 1.020e-161
Identity = 231/302 (76.49%), Postives = 274/302 (90.73%), Query Frame = 1 
Query:    1 PKSGPDVIRAFVKNLPSSPGVYRMIDEAGEVIYVGKARSLKARVTNYTRPEALEVRLQRMVASTHSMEFVRTETEAEALLLEANLIKRLRPRYNVLLRDDKSFPYILIATEHEAPELMKHRGTRRRQGHYFGPFASALAVKRTINAMQRAFLLRTCSDSFYKARRRPCMLHQIKRCAAPCTGEISIKDYAQLAEEARQFLSGRSKSVQDHLSRDMNDAAERLDFEQAARLRDRLSALALIQSGGDVAARTVEEADVFAIHQDAGQFLIQVFFFRAFQNWGNHAFRPRADSSLSEAEVLEAFI 906
            P SGP++IRAFV+ LP++PGVYRM+D AGEV+YVGKAR+LKARVTNYTRPEAL +R+QRM+A+T +MEFVRTETE+EALLLEANLIKRLRPR+NVLLRDDKSFPYILIAT+HEAPEL KHRG+RRR G+YFGPFASA AV RT+ ++Q+AFLLR CS SFY AR RPC+  QIKRC+APCTGEIS++DYA+L E+ARQFLSG+S+SVQ HL +DM +AAE+LDFE+AA +RDRLSALALIQS GD  AR+VEEADVFAIHQ+ GQF +QVFFFRA+QNWGN+ +RPRAD+S+ EAEVLEAFI
Sbjct:    7 PASGPEIIRAFVRTLPNAPGVYRMLDAAGEVMYVGKARNLKARVTNYTRPEALSIRIQRMIAATATMEFVRTETESEALLLEANLIKRLRPRFNVLLRDDKSFPYILIATDHEAPELNKHRGSRRRPGYYFGPFASATAVARTLASLQKAFLLRNCSASFYAARTRPCLQFQIKRCSAPCTGEISLEDYAKLVEDARQFLSGKSRSVQQHLQQDMAEAAEQLDFERAALIRDRLSALALIQSQGDATARSVEEADVFAIHQEGGQFCVQVFFFRAYQNWGNYPYRPRADASMDEAEVLEAFI 308
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101139.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V7BF73_9PROT9.090e-17885.43UvrABC system protein C n=1 Tax=Alphaproteobacteri... [more]
A0A1Q3YZU4_9HYPH7.920e-17182.39UvrABC system protein C n=4 Tax=Hyphomicrobiales T... [more]
A0A0Q7E4P9_9HYPH1.250e-16981.46UvrABC system protein C n=7 Tax=Hyphomicrobiales T... [more]
A0A433XLL7_9HYPH1.080e-16879.73UvrABC system protein C n=2 Tax=Arsenicitalea aura... [more]
UPI000FDB354A2.060e-16779.60excinuclease ABC subunit UvrC n=2 Tax=Devosia TaxI... [more]
A0A0F5LWH9_9HYPH5.140e-16479.00UvrABC system protein C n=2 Tax=Devosia limi DSM 1... [more]
A0A0F5FEE8_9HYPH2.450e-16278.15UvrABC system protein C n=4 Tax=Hyphomicrobiales T... [more]
A0A085EWH2_9HYPH3.260e-16278.15UvrABC system protein C n=17 Tax=Devosiaceae TaxID... [more]
UPI000D3CA3523.700e-16276.74excinuclease ABC subunit UvrC n=1 Tax=Devosia subm... [more]
A0A1E4G0U3_9HYPH1.020e-16176.49UvrABC system protein C n=1 Tax=Pelagibacterium sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101139contigL-digitata_M_contig101139:26..931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1502724.FF80_03215
Preferred nameuvrC
PFAMsGIY-YIG,HHH_2,HHH_5,UVR,UvrC_HhH_N
Model size906
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03703
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009380,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0071496,GO:1902494,GO:1905347,GO:1905348,GO:1990391
Exons1
Evalue5.34e-163
EggNOG OGsCOG0322@1|root,COG0322@2|Bacteria,1MV38@1224|Proteobacteria,2TT32@28211|Alphaproteobacteria,3N6B3@45401|Hyphomicrobiaceae
DescriptionThe UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
Cds size906
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.5965693-CDS-L-digitata_M_contig101139:25..9311682406614.5965693-CDS-L-digitata_M_contig101139:25..931Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101139 26..931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101139.1.1prot_L-digitata_M_contig101139.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101139 26..931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101139.1.1

>prot_L-digitata_M_contig101139.1.1 ID=prot_L-digitata_M_contig101139.1.1|Name=mRNA_L-digitata_M_contig101139.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=302bp
PKSGPDVIRAFVKNLPSSPGVYRMIDEAGEVIYVGKARSLKARVTNYTRP
EALEVRLQRMVASTHSMEFVRTETEAEALLLEANLIKRLRPRYNVLLRDD
KSFPYILIATEHEAPELMKHRGTRRRQGHYFGPFASALAVKRTINAMQRA
FLLRTCSDSFYKARRRPCMLHQIKRCAAPCTGEISIKDYAQLAEEARQFL
SGRSKSVQDHLSRDMNDAAERLDFEQAARLRDRLSALALIQSGGDVAART
VEEADVFAIHQDAGQFLIQVFFFRAFQNWGNHAFRPRADSSLSEAEVLEA
FI
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mRNA from alignment at L-digitata_M_contig101139:26..931+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101139.1.1 ID=mRNA_L-digitata_M_contig101139.1.1|Name=mRNA_L-digitata_M_contig101139.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=906bp|location=Sequence derived from alignment at L-digitata_M_contig101139:26..931+ (Laminaria digitata LdigPH10_18mv male)
CCCAAGAGCGGTCCGGACGTCATCCGGGCCTTCGTCAAGAACCTGCCGTC
GTCGCCCGGCGTCTATCGCATGATCGACGAAGCCGGCGAGGTGATCTACG
TCGGCAAGGCGCGCAGCCTCAAGGCGCGGGTGACCAATTACACGCGGCCC
GAAGCGCTCGAAGTGCGCTTGCAGCGCATGGTCGCATCAACGCACTCAAT
GGAGTTCGTGCGCACCGAGACCGAGGCCGAGGCGCTGCTGCTCGAGGCCA
ATCTCATCAAGCGGCTGCGGCCGCGCTACAACGTGCTGCTGCGCGACGAC
AAGAGCTTCCCCTATATCCTCATCGCCACCGAGCATGAGGCGCCCGAACT
GATGAAGCACCGCGGCACGCGCCGCCGGCAAGGTCATTACTTCGGCCCCT
TTGCCTCGGCGCTGGCGGTCAAGCGGACCATCAACGCGATGCAGCGCGCG
TTCCTGCTGCGGACCTGCTCGGACAGTTTCTACAAGGCCCGCAGGCGGCC
GTGCATGCTGCACCAGATCAAGCGCTGCGCAGCGCCATGCACCGGCGAGA
TCTCCATCAAGGACTATGCGCAACTGGCGGAGGAGGCGCGGCAGTTTCTC
TCCGGCCGGTCGAAGTCGGTGCAGGATCACCTGTCACGCGACATGAATGA
TGCGGCCGAACGGCTCGACTTTGAGCAGGCGGCGCGATTGCGCGATCGGC
TGAGTGCTTTGGCGCTGATCCAGAGCGGCGGCGATGTCGCGGCGCGCACG
GTCGAGGAGGCCGACGTCTTCGCCATCCATCAGGACGCCGGGCAATTCCT
GATCCAGGTTTTCTTCTTCCGCGCCTTCCAGAACTGGGGCAACCACGCCT
TCCGGCCGCGCGCCGACAGTTCGCTGTCCGAGGCCGAAGTGCTCGAGGCC
TTCATC
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Coding sequence (CDS) from alignment at L-digitata_M_contig101139:26..931+

>mRNA_L-digitata_M_contig101139.1.1 ID=mRNA_L-digitata_M_contig101139.1.1|Name=mRNA_L-digitata_M_contig101139.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=906bp|location=Sequence derived from alignment at L-digitata_M_contig101139:26..931+ (Laminaria digitata LdigPH10_18mv male)
CCCAAGAGCGGTCCGGACGTCATCCGGGCCTTCGTCAAGAACCTGCCGTC
GTCGCCCGGCGTCTATCGCATGATCGACGAAGCCGGCGAGGTGATCTACG
TCGGCAAGGCGCGCAGCCTCAAGGCGCGGGTGACCAATTACACGCGGCCC
GAAGCGCTCGAAGTGCGCTTGCAGCGCATGGTCGCATCAACGCACTCAAT
GGAGTTCGTGCGCACCGAGACCGAGGCCGAGGCGCTGCTGCTCGAGGCCA
ATCTCATCAAGCGGCTGCGGCCGCGCTACAACGTGCTGCTGCGCGACGAC
AAGAGCTTCCCCTATATCCTCATCGCCACCGAGCATGAGGCGCCCGAACT
GATGAAGCACCGCGGCACGCGCCGCCGGCAAGGTCATTACTTCGGCCCCT
TTGCCTCGGCGCTGGCGGTCAAGCGGACCATCAACGCGATGCAGCGCGCG
TTCCTGCTGCGGACCTGCTCGGACAGTTTCTACAAGGCCCGCAGGCGGCC
GTGCATGCTGCACCAGATCAAGCGCTGCGCAGCGCCATGCACCGGCGAGA
TCTCCATCAAGGACTATGCGCAACTGGCGGAGGAGGCGCGGCAGTTTCTC
TCCGGCCGGTCGAAGTCGGTGCAGGATCACCTGTCACGCGACATGAATGA
TGCGGCCGAACGGCTCGACTTTGAGCAGGCGGCGCGATTGCGCGATCGGC
TGAGTGCTTTGGCGCTGATCCAGAGCGGCGGCGATGTCGCGGCGCGCACG
GTCGAGGAGGCCGACGTCTTCGCCATCCATCAGGACGCCGGGCAATTCCT
GATCCAGGTTTTCTTCTTCCGCGCCTTCCAGAACTGGGGCAACCACGCCT
TCCGGCCGCGCGCCGACAGTTCGCTGTCCGAGGCCGAAGTGCTCGAGGCC
TTCATC
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