mRNA_L-digitata_M_contig10107.4.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10107.4.1
Unique NamemRNA_L-digitata_M_contig10107.4.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10107.4.1 vs. uniprot
Match: A0A6H5K5Q3_9PHAE (AP4E_app_platf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5Q3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.640e-15
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   10 AVAPQAPLPPPQSSGGAGTPLSTADIFASGPRLRPVSKVWGRPKPGD 150
            A APQAPLPPPQSSGGAG PLSTADIFASGPRLRPVSKVWGRP+PG+
Sbjct:  661 AAAPQAPLPPPQSSGGAGDPLSTADIFASGPRLRPVSKVWGRPRPGE 707
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10107.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5Q3_9PHAE3.640e-1591.49AP4E_app_platf domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10107contigL-digitata_M_contig10107:4279..6789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FX42
Preferred nameAP4E1
PFAMsAP4E_app_platf,Adaptin_N
Model size1279
Max annot lvl2759|Eukaryota
KEGG koko:K12400,ko:K20164
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796
Exons3
Evalue5.89e-18
EggNOG OGsCOG4354@1|root,KOG1062@2759|Eukaryota
Descriptionintracellular protein transport
Cds size1278
COG categoryG
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.8912501-CDS-L-digitata_M_contig10107:4278..51691682406613.8912501-CDS-L-digitata_M_contig10107:4278..5169Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10107 4279..5169 -
1682406613.9023452-CDS-L-digitata_M_contig10107:5836..61191682406613.9023452-CDS-L-digitata_M_contig10107:5836..6119Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10107 5837..6119 -
1682406613.910506-CDS-L-digitata_M_contig10107:6685..67891682406613.910506-CDS-L-digitata_M_contig10107:6685..6789Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10107 6686..6789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10107.4.1prot_L-digitata_M_contig10107.4.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10107 4279..6789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10107.4.1

>prot_L-digitata_M_contig10107.4.1 ID=prot_L-digitata_M_contig10107.4.1|Name=mRNA_L-digitata_M_contig10107.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=426bp
MSAAVAPQAPLPPPQSSGGAGTPLSTADIFASGPRLRPVSKVWGRPKPGD
AQQQQPGAGGGGGVGASGAKESLEAAAAAKTVGAAGGGYPSSAGKAAADP
SSSSAAGGYDSRRGSWGGGGGGGGAPPAEVKEDPIAAAQRAEKEKMASML
FGGTGGTRTKATASPAGISSRSRISSASSSSRPDATAAAAATVAASAAAA
AVASTPSTPRATAAAGASSSPPAATAPVDLLDFMSMEAPPAVASDDLLGG
VGEPSTTTAAATAAAAARARSSSASSTSLSSSPNQPGVDLLGGIGGGGSP
PSSQAFGANGSSSAGAAQTLDDLLGGGTGDIGGASSNGAGGGAQSALNNG
DGIGAAAMGNGEQAWPGASGNRAGAAGSPSSGATATAAAALGQSASAELD
LSGLFLGDASSSSASSPGGLRGSAGG
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mRNA from alignment at L-digitata_M_contig10107:4279..6789-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10107.4.1 ID=mRNA_L-digitata_M_contig10107.4.1|Name=mRNA_L-digitata_M_contig10107.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2511bp|location=Sequence derived from alignment at L-digitata_M_contig10107:4279..6789- (Laminaria digitata LdigPH10_18mv male)
ATGTCGGCGGCGGTGGCTCCTCAGGCACCGCTACCACCTCCGCAGTCGTC
GGGTGGCGCCGGAACTCCTCTTTCCACCGCCGACATATTTGCAAGCGGTC
CCAGGTGCGTGTTATACGGCACGGGGCAAGCTTTTTTTGTTTGTGGCCAC
GTGGGGTGTTGGACAGTGTTGATGCCGTGTTGCAGCAGTCGTGTTGTGTG
CGGTTGCTACTGGTGCTCTTGTTGCTACTGCTGCTGCTGCTATTATTTCG
CGTTGCAGTAGTGTGTTGTCGTGTTGCAGTAGTCCTATTGCTGGTGCAGT
ACTGCTGTCGTGTTGCAGGAGTCGTATAGTTGCGTTACATTAGTCCTGTT
ACAGCAGTAGTCATGTTACAGTAACAGCTTTTTAGGCGTGTGCGGCAGTC
ATGTCACACGAGATAGCTGCATGTTGTCATAGGTTATAGTCGTGCAGCGG
TGGTGTTACAAGAGTAGTTGCTCCGGTAAGACTCGTGTTGCAATCGTATT
CGTGTTGCGGAACTCGCGTTACGGTATTCATGTATTCATCGTATTACAGC
AATAGTCGGCGTGCTACAGACAGTCGTCGTCGTGTTAGATTGAGACCCGT
GTTACGGCCATGCAGGATATTGATTACCCCCCCCCCTCCCCGCTCCCTGT
CGCGCTGCCTAAAACATTAGATTGAGACCCGTGTCGAAGGTGTGGGGACG
GCCCAAGCCCGGAGACGCGCAGCAGCAACAGCCCGGGGCTGGCGGTGGCG
GTGGCGTTGGGGCCTCGGGGGCTAAGGAATCCCTTGAGGCGGCCGCCGCG
GCCAAGACAGTGGGTGCGGCAGGCGGAGGGTATCCTTCGTCAGCAGGGAA
AGCGGCTGCGGACCCGTCGTCGTCGTCTGCTGCGGGCGGGTATGACTCCC
GGAGGGGGAGCTGGGGCGGCGGCGGGGGCGGCGGAGGCGCTCCTCCGGCA
GAGGTGCGATTGGTGGTGTTGGTGGTGTTATTGGCGGTGTTGACGTTGGT
GTTGTTGGCGTTCGTCTTGATGTTGGCAATGTTGATGGCGATGTTGTTGG
GTTTGATGTTGATGGCGATGTTGTTGGGTTTGATGTTGATGGCGGTGTTG
GTATTTGTGTTAATGTTGATGTTTGTTGCGATGATAACGTCGATGGGGAT
CCGCTTCGTTTCCCCTCCCAGAGCGTCTCAAGGCTTCGCTGAAAGGATTT
CGCGGCGCGCTTAGTTTCACGGTTCGGGGTGGGAGGGAGTGTCCGCGGTG
GGCAGTAGGGCGTGAACTGTCTGTCGTGTGAACCCGTTACCGCCGTCATT
GTTCTAGCAGCAGCCGCCGTCTTTAATTTAGCAGCCGTTCTTCTTCCCCC
ACCGCCTCCCGTGCCACAACATCCAATCGCTCCCCGCGTTGTTCCCTCTG
TTAATCCGCTCAACCCCCTCCCCCTCTATGGTCATACGACTACGGCCATG
CATGGTAATGATTACACTCCCACCCCTTTCCCTTTCTCGCACACGCATCC
ACTCTTGCGCCAAACACACACACGCGCGCGCGACAACACCCTGTCCTCGG
CGATGGCGGTGGCACACCAAACCACCAAACATTCTCGGTCTTGCGCTTGC
AATTTTCGCATCGGCCGCAGGTCAAGGAAGACCCGATCGCGGCCGCACAG
CGAGCGGAGAAGGAGAAGATGGCGTCGATGCTCTTCGGTGGGACGGGGGG
GACGCGCACAAAGGCAACGGCGTCGCCTGCCGGGATCTCGTCCCGCTCTA
GGATTTCTTCTGCTTCGTCATCGTCCCGACCAGACGCCACGGCGGCGGCG
GCAGCGACGGTGGCGGCGTCGGCAGCAGCGGCAGCGGTGGCGTCGACTCC
ATCGACCCCGCGAGCGACGGCAGCAGCGGGGGCTTCCTCTAGTCCGCCAG
CGGCAACAGCGCCGGTCGACCTGCTCGACTTTATGAGCATGGAGGCGCCG
CCGGCCGTCGCGAGCGATGATTTGCTCGGAGGAGTGGGGGAACCCTCCAC
CACCACCGCTGCTGCTACGGCCGCCGCCGCTGCGCGTGCCCGTTCATCGT
CAGCGTCCTCGACATCTCTCTCATCGTCTCCCAACCAGCCCGGGGTGGAC
CTTCTTGGCGGAATTGGCGGTGGTGGGTCTCCACCCTCCTCGCAGGCGTT
CGGCGCCAACGGGTCCTCTTCCGCTGGGGCTGCTCAGACGCTGGACGACT
TGCTCGGGGGTGGAACTGGAGACATTGGCGGCGCCAGCAGCAACGGCGCG
GGCGGCGGCGCTCAAAGCGCGCTCAACAACGGCGACGGCATCGGCGCCGC
GGCGATGGGCAACGGGGAGCAAGCGTGGCCGGGCGCTAGCGGGAACCGGG
CGGGTGCGGCGGGATCACCGTCTTCTGGGGCAACGGCGACGGCGGCGGCG
GCGTTGGGCCAGTCAGCGTCGGCGGAGCTTGACCTTTCCGGGCTCTTCCT
CGGCGACGCAAGTTCTTCGTCTGCTTCTTCTCCCGGTGGGCTGAGAGGCA
GCGCAGGCGGG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10107:4279..6789-

>mRNA_L-digitata_M_contig10107.4.1 ID=mRNA_L-digitata_M_contig10107.4.1|Name=mRNA_L-digitata_M_contig10107.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=1278bp|location=Sequence derived from alignment at L-digitata_M_contig10107:4279..6789- (Laminaria digitata LdigPH10_18mv male)
ATGTCGGCGGCGGTGGCTCCTCAGGCACCGCTACCACCTCCGCAGTCGTC
GGGTGGCGCCGGAACTCCTCTTTCCACCGCCGACATATTTGCAAGCGGTC
CCAGATTGAGACCCGTGTCGAAGGTGTGGGGACGGCCCAAGCCCGGAGAC
GCGCAGCAGCAACAGCCCGGGGCTGGCGGTGGCGGTGGCGTTGGGGCCTC
GGGGGCTAAGGAATCCCTTGAGGCGGCCGCCGCGGCCAAGACAGTGGGTG
CGGCAGGCGGAGGGTATCCTTCGTCAGCAGGGAAAGCGGCTGCGGACCCG
TCGTCGTCGTCTGCTGCGGGCGGGTATGACTCCCGGAGGGGGAGCTGGGG
CGGCGGCGGGGGCGGCGGAGGCGCTCCTCCGGCAGAGGTCAAGGAAGACC
CGATCGCGGCCGCACAGCGAGCGGAGAAGGAGAAGATGGCGTCGATGCTC
TTCGGTGGGACGGGGGGGACGCGCACAAAGGCAACGGCGTCGCCTGCCGG
GATCTCGTCCCGCTCTAGGATTTCTTCTGCTTCGTCATCGTCCCGACCAG
ACGCCACGGCGGCGGCGGCAGCGACGGTGGCGGCGTCGGCAGCAGCGGCA
GCGGTGGCGTCGACTCCATCGACCCCGCGAGCGACGGCAGCAGCGGGGGC
TTCCTCTAGTCCGCCAGCGGCAACAGCGCCGGTCGACCTGCTCGACTTTA
TGAGCATGGAGGCGCCGCCGGCCGTCGCGAGCGATGATTTGCTCGGAGGA
GTGGGGGAACCCTCCACCACCACCGCTGCTGCTACGGCCGCCGCCGCTGC
GCGTGCCCGTTCATCGTCAGCGTCCTCGACATCTCTCTCATCGTCTCCCA
ACCAGCCCGGGGTGGACCTTCTTGGCGGAATTGGCGGTGGTGGGTCTCCA
CCCTCCTCGCAGGCGTTCGGCGCCAACGGGTCCTCTTCCGCTGGGGCTGC
TCAGACGCTGGACGACTTGCTCGGGGGTGGAACTGGAGACATTGGCGGCG
CCAGCAGCAACGGCGCGGGCGGCGGCGCTCAAAGCGCGCTCAACAACGGC
GACGGCATCGGCGCCGCGGCGATGGGCAACGGGGAGCAAGCGTGGCCGGG
CGCTAGCGGGAACCGGGCGGGTGCGGCGGGATCACCGTCTTCTGGGGCAA
CGGCGACGGCGGCGGCGGCGTTGGGCCAGTCAGCGTCGGCGGAGCTTGAC
CTTTCCGGGCTCTTCCTCGGCGACGCAAGTTCTTCGTCTGCTTCTTCTCC
CGGTGGGCTGAGAGGCAGCGCAGGCGGG
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