mRNA_L-digitata_M_contig100989.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100989.1.1
Unique NamemRNA_L-digitata_M_contig100989.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: X1BUU2_9ZZZZ (DEDD_Tnp_IS110 domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1BUU2_9ZZZZ)

HSP 1 Score: 105 bits (261), Expect = 1.070e-25
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 CGNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWEL 243
            CGNSHARWMLVE ++ YR  P VS ALTTRQ   PRQ+KE++WR QNRL  RY +LK RG  ENK  +A+ARELSA++WE+
Sbjct:  189 CGNSHARWMLVECSQHYRKAPKVSIALTTRQVGQPRQVKELAWRMQNRLHSRYVKLKMRGKKENKIIVALARELSAFIWEM 269          
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A6P1MFQ4_9BACT (IS110 family transposase n=4 Tax=Tichowtungia aerotolerans TaxID=2697043 RepID=A0A6P1MFQ4_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 3.010e-22
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 CGNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWEL 243
            CGNSHARWMLVESA+ YR  P ++  L+ RQ  L R++K ISW AQNRL  R+ +L  RG+H NK  +AVARELS+Y+W+L
Sbjct:  295 CGNSHARWMLVESAEHYRKPPKIAKGLSVRQEGLSREVKIISWHAQNRLNKRWNKLIFRGMHPNKIRVAVARELSSYIWDL 375          
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A2V6Q365_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6Q365_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 2.120e-21
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    4 GNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWELHQTQ 255
            GN HAR +L+E+AKAYR +  VS  +  RQ  LP  I++I+WRAQ RLC RYR+L ARG H N  A AVAREL+A++W + +TQ
Sbjct:   61 GNGHARRVLIEAAKAYRHRAKVSEPIQARQQHLPAPIRDIAWRAQVRLCGRYRKLLARGKHPNTIAAAVARELAAFMWAIARTQ 144          
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A358C6S8_9PROT (Uncharacterized protein n=1 Tax=Thiobacillus sp. TaxID=924 RepID=A0A358C6S8_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 1.070e-20
Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    4 GNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWE 240
            GNSH R MLVE+A  YR    +S  +T RQ   PR + E++WRAQ RLC RYRRL ARG+H NK  +AVAREL+A+LWE
Sbjct:  130 GNSHVRRMLVEAAWCYRYSARMSRPVTERQEGQPRSVCEVAWRAQLRLCTRYRRLCARGMHSNKICVAVARELAAFLWE 208          
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A4P6PCZ5_9BACT (IS110 family transposase n=1 Tax=Verrucomicrobia bacterium S94 TaxID=2488809 RepID=A0A4P6PCZ5_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 2.810e-20
Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 CGNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWEL 243
            CGNSHARWML+E A  YR  P VS AL+ RQ  L R+++ +SW AQNRL  R+ +L  R +H NK  +A+ARELS+YLW+L
Sbjct:  331 CGNSHARWMLIECAGHYRMPPKVSKALSKRQEGLSREVRALSWHAQNRLNNRWYKLMFRKVHHNKIQVAIARELSSYLWDL 411          
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A8J7MCX0_9BACT (IS110 family transposase n=1 Tax=Persicirhabdus sediminis TaxID=454144 RepID=A0A8J7MCX0_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 3.030e-20
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 CGNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWEL 243
            CGNSHARWMLVE A+ +R  P VS AL  RQ    +++ E++WR QNRL  RY +LK RG +ENK  +AVAREL A++WEL
Sbjct:  285 CGNSHARWMLVECAQHFRRPPKVSGALGDRQKGQSKEVLELAWRMQNRLHKRYVKLKMRGKNENKCIVAVARELVAFIWEL 365          
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A120DEI5_9BURK (Transposase IS116/IS110/IS902 n=3 Tax=Comamonadaceae TaxID=80864 RepID=A0A120DEI5_9BURK)

HSP 1 Score: 90.1 bits (222), Expect = 1.910e-19
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    4 GNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWE 240
            GN+H R +LVE+A  YR    +S  +T RQ   PR + EI+WRAQ RLC RYRRL ARG+H NK  +AVAREL+A+LWE
Sbjct:  281 GNAHVRRVLVEAAWCYRYSARMSRPVTERQQDQPRSVCEIAWRAQLRLCSRYRRLSARGMHANKVCVAVARELAAFLWE 359          
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A6C2UL73_9BACT (DEDD_Tnp_IS110 domain-containing protein n=1 Tax=Pontiella sulfatireligans TaxID=2750658 RepID=A0A6C2UL73_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 2.110e-19
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 CGNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWEL 243
            CGN+HARW+L+E A  Y+    VS AL+ RQ  L R +K++SW AQNRL  R+ +L  RGLH NK   A+ARELS+Y+W++
Sbjct:  282 CGNAHARWILIECAGHYKLPAKVSKALSVRQEGLSRDVKKVSWHAQNRLSKRWYKLALRGLHTNKIRTAIARELSSYIWDI 362          
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: UPI001D010AA5 (hypothetical protein n=1 Tax=Luteolibacter sp. NBU1238 TaxID=2776705 RepID=UPI001D010AA5)

HSP 1 Score: 84.0 bits (206), Expect = 2.230e-19
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   25 MLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWEL 243
            MLVESA+ YR  P VS  L+ RQ   P +++E++WRAQ+RL  RY+RLKAR L+ENKA IA+AREL A++WEL
Sbjct:    1 MLVESAQHYRRPPRVSPVLSQRQQGQPAEVRELAWRAQHRLHHRYKRLKARQLNENKAIIAMARELGAFIWEL 73          
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A1F2TDD3_9BACT (IS110 family transposase n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 TaxID=1797182 RepID=A0A1F2TDD3_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 5.100e-19
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    4 GNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWEL-HQTQPA 261
            GNS AR  LVE+A AYR    VS  +  RQ+ LP+ + +++WRAQ RLC R+RRL ARGLH NK  +AVARELS ++W L  Q +PA
Sbjct:  282 GNSSARRALVEAAWAYRYGARVSVGIARRQSGLPKSVTDLAWRAQLRLCARFRRLSARGLHRNKIVVAVARELSGFVWALGQQVKPA 368          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
X1BUU2_9ZZZZ1.070e-2564.20DEDD_Tnp_IS110 domain-containing protein (Fragment... [more]
A0A6P1MFQ4_9BACT3.010e-2259.26IS110 family transposase n=4 Tax=Tichowtungia aero... [more]
A0A2V6Q365_9BACT2.120e-2155.95Uncharacterized protein n=1 Tax=Candidatus Rokubac... [more]
A0A358C6S8_9PROT1.070e-2059.49Uncharacterized protein n=1 Tax=Thiobacillus sp. T... [more]
A0A4P6PCZ5_9BACT2.810e-2056.79IS110 family transposase n=1 Tax=Verrucomicrobia b... [more]
A0A8J7MCX0_9BACT3.030e-2058.02IS110 family transposase n=1 Tax=Persicirhabdus se... [more]
A0A120DEI5_9BURK1.910e-1958.23Transposase IS116/IS110/IS902 n=3 Tax=Comamonadace... [more]
A0A6C2UL73_9BACT2.110e-1953.09DEDD_Tnp_IS110 domain-containing protein n=1 Tax=P... [more]
UPI001D010AA52.230e-1960.27hypothetical protein n=1 Tax=Luteolibacter sp. NBU... [more]
A0A1F2TDD3_9BACT5.100e-1955.17IS110 family transposase n=1 Tax=Acidobacteria bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100989contigL-digitata_M_contig100989:3..269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123504.JQKD01000019_gene5508
PFAMsDEDD_Tnp_IS110,Transposase_20
Model size267
Max annot lvl28216|Betaproteobacteria
KEGG koko:K07486
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.59e-17
EggNOG OGsCOG3547@1|root,COG3547@2|Bacteria,1MW0N@1224|Proteobacteria,2VWYN@28216|Betaproteobacteria,4AFWS@80864|Comamonadaceae
DescriptionTransposase IS116/IS110/IS902 family
Cds size243
COG categoryL
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.953682-UTR-L-digitata_M_contig100989:2..261682406612.953682-UTR-L-digitata_M_contig100989:2..26Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100989 3..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.9621744-CDS-L-digitata_M_contig100989:26..2691682406612.9621744-CDS-L-digitata_M_contig100989:26..269Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100989 27..269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100989.1.1prot_L-digitata_M_contig100989.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100989 27..269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100989.1.1

>prot_L-digitata_M_contig100989.1.1 ID=prot_L-digitata_M_contig100989.1.1|Name=mRNA_L-digitata_M_contig100989.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=81bp
MLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKA
RGLHENKAAIAVARELSAYLWELHQTQPAT*
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mRNA from alignment at L-digitata_M_contig100989:3..269+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100989.1.1 ID=mRNA_L-digitata_M_contig100989.1.1|Name=mRNA_L-digitata_M_contig100989.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=267bp|location=Sequence derived from alignment at L-digitata_M_contig100989:3..269+ (Laminaria digitata LdigPH10_18mv male)
TGCGGCAACAGCCACGCCCGCTGGATGCTCGTGGAAAGCGCCAAAGCCTA CCGGACAAAACCCACCGTCAGCGCCGCCCTCACCACCCGCCAGGCGAAAC TCCCGCGCCAGATCAAAGAGATCTCATGGCGCGCCCAGAACCGCCTCTGC ATGCGCTACCGCAGGCTCAAGGCACGCGGCCTTCATGAAAACAAAGCCGC CATCGCCGTCGCCAGAGAGCTCTCCGCCTACCTCTGGGAACTCCACCAAA CCCAACCCGCAACCTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100989:3..269+

>mRNA_L-digitata_M_contig100989.1.1 ID=mRNA_L-digitata_M_contig100989.1.1|Name=mRNA_L-digitata_M_contig100989.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=243bp|location=Sequence derived from alignment at L-digitata_M_contig100989:3..269+ (Laminaria digitata LdigPH10_18mv male)
ATGCTCGTGGAAAGCGCCAAAGCCTACCGGACAAAACCCACCGTCAGCGC
CGCCCTCACCACCCGCCAGGCGAAACTCCCGCGCCAGATCAAAGAGATCT
CATGGCGCGCCCAGAACCGCCTCTGCATGCGCTACCGCAGGCTCAAGGCA
CGCGGCCTTCATGAAAACAAAGCCGCCATCGCCGTCGCCAGAGAGCTCTC
CGCCTACCTCTGGGAACTCCACCAAACCCAACCCGCAACCTAA
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