mRNA_L-digitata_M_contig100989.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: X1BUU2_9ZZZZ (DEDD_Tnp_IS110 domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1BUU2_9ZZZZ) HSP 1 Score: 105 bits (261), Expect = 1.070e-25 Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 1
Query: 1 CGNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWEL 243
CGNSHARWMLVE ++ YR P VS ALTTRQ PRQ+KE++WR QNRL RY +LK RG ENK +A+ARELSA++WE+
Sbjct: 189 CGNSHARWMLVECSQHYRKAPKVSIALTTRQVGQPRQVKELAWRMQNRLHSRYVKLKMRGKKENKIIVALARELSAFIWEM 269
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A6P1MFQ4_9BACT (IS110 family transposase n=4 Tax=Tichowtungia aerotolerans TaxID=2697043 RepID=A0A6P1MFQ4_9BACT) HSP 1 Score: 97.8 bits (242), Expect = 3.010e-22 Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 1
Query: 1 CGNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWEL 243
CGNSHARWMLVESA+ YR P ++ L+ RQ L R++K ISW AQNRL R+ +L RG+H NK +AVARELS+Y+W+L
Sbjct: 295 CGNSHARWMLVESAEHYRKPPKIAKGLSVRQEGLSREVKIISWHAQNRLNKRWNKLIFRGMHPNKIRVAVARELSSYIWDL 375
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A2V6Q365_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6Q365_9BACT) HSP 1 Score: 90.9 bits (224), Expect = 2.120e-21 Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = 1
Query: 4 GNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWELHQTQ 255
GN HAR +L+E+AKAYR + VS + RQ LP I++I+WRAQ RLC RYR+L ARG H N A AVAREL+A++W + +TQ
Sbjct: 61 GNGHARRVLIEAAKAYRHRAKVSEPIQARQQHLPAPIRDIAWRAQVRLCGRYRKLLARGKHPNTIAAAVARELAAFMWAIARTQ 144
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A358C6S8_9PROT (Uncharacterized protein n=1 Tax=Thiobacillus sp. TaxID=924 RepID=A0A358C6S8_9PROT) HSP 1 Score: 90.9 bits (224), Expect = 1.070e-20 Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 4 GNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWE 240
GNSH R MLVE+A YR +S +T RQ PR + E++WRAQ RLC RYRRL ARG+H NK +AVAREL+A+LWE
Sbjct: 130 GNSHVRRMLVEAAWCYRYSARMSRPVTERQEGQPRSVCEVAWRAQLRLCTRYRRLCARGMHSNKICVAVARELAAFLWE 208
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A4P6PCZ5_9BACT (IS110 family transposase n=1 Tax=Verrucomicrobia bacterium S94 TaxID=2488809 RepID=A0A4P6PCZ5_9BACT) HSP 1 Score: 92.8 bits (229), Expect = 2.810e-20 Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 1 CGNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWEL 243
CGNSHARWML+E A YR P VS AL+ RQ L R+++ +SW AQNRL R+ +L R +H NK +A+ARELS+YLW+L
Sbjct: 331 CGNSHARWMLIECAGHYRMPPKVSKALSKRQEGLSREVRALSWHAQNRLNNRWYKLMFRKVHHNKIQVAIARELSSYLWDL 411
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A8J7MCX0_9BACT (IS110 family transposase n=1 Tax=Persicirhabdus sediminis TaxID=454144 RepID=A0A8J7MCX0_9BACT) HSP 1 Score: 92.4 bits (228), Expect = 3.030e-20 Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 1 CGNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWEL 243
CGNSHARWMLVE A+ +R P VS AL RQ +++ E++WR QNRL RY +LK RG +ENK +AVAREL A++WEL
Sbjct: 285 CGNSHARWMLVECAQHFRRPPKVSGALGDRQKGQSKEVLELAWRMQNRLHKRYVKLKMRGKNENKCIVAVARELVAFIWEL 365
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A120DEI5_9BURK (Transposase IS116/IS110/IS902 n=3 Tax=Comamonadaceae TaxID=80864 RepID=A0A120DEI5_9BURK) HSP 1 Score: 90.1 bits (222), Expect = 1.910e-19 Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 4 GNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWE 240
GN+H R +LVE+A YR +S +T RQ PR + EI+WRAQ RLC RYRRL ARG+H NK +AVAREL+A+LWE
Sbjct: 281 GNAHVRRVLVEAAWCYRYSARMSRPVTERQQDQPRSVCEIAWRAQLRLCSRYRRLSARGMHANKVCVAVARELAAFLWE 359
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A6C2UL73_9BACT (DEDD_Tnp_IS110 domain-containing protein n=1 Tax=Pontiella sulfatireligans TaxID=2750658 RepID=A0A6C2UL73_9BACT) HSP 1 Score: 90.1 bits (222), Expect = 2.110e-19 Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
Query: 1 CGNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWEL 243
CGN+HARW+L+E A Y+ VS AL+ RQ L R +K++SW AQNRL R+ +L RGLH NK A+ARELS+Y+W++
Sbjct: 282 CGNAHARWILIECAGHYKLPAKVSKALSVRQEGLSRDVKKVSWHAQNRLSKRWYKLALRGLHTNKIRTAIARELSSYIWDI 362
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: UPI001D010AA5 (hypothetical protein n=1 Tax=Luteolibacter sp. NBU1238 TaxID=2776705 RepID=UPI001D010AA5) HSP 1 Score: 84.0 bits (206), Expect = 2.230e-19 Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 1
Query: 25 MLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWEL 243
MLVESA+ YR P VS L+ RQ P +++E++WRAQ+RL RY+RLKAR L+ENKA IA+AREL A++WEL
Sbjct: 1 MLVESAQHYRRPPRVSPVLSQRQQGQPAEVRELAWRAQHRLHHRYKRLKARQLNENKAIIAMARELGAFIWEL 73
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Match: A0A1F2TDD3_9BACT (IS110 family transposase n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 TaxID=1797182 RepID=A0A1F2TDD3_9BACT) HSP 1 Score: 89.0 bits (219), Expect = 5.100e-19 Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 4 GNSHARWMLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKARGLHENKAAIAVARELSAYLWEL-HQTQPA 261
GNS AR LVE+A AYR VS + RQ+ LP+ + +++WRAQ RLC R+RRL ARGLH NK +AVARELS ++W L Q +PA
Sbjct: 282 GNSSARRALVEAAWAYRYGARVSVGIARRQSGLPKSVTDLAWRAQLRLCARFRRLSARGLHRNKIVVAVARELSGFVWALGQQVKPA 368 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100989.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100989.1.1 >prot_L-digitata_M_contig100989.1.1 ID=prot_L-digitata_M_contig100989.1.1|Name=mRNA_L-digitata_M_contig100989.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=81bp MLVESAKAYRTKPTVSAALTTRQAKLPRQIKEISWRAQNRLCMRYRRLKAback to top mRNA from alignment at L-digitata_M_contig100989:3..269+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100989.1.1 ID=mRNA_L-digitata_M_contig100989.1.1|Name=mRNA_L-digitata_M_contig100989.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=267bp|location=Sequence derived from alignment at L-digitata_M_contig100989:3..269+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100989:3..269+ >mRNA_L-digitata_M_contig100989.1.1 ID=mRNA_L-digitata_M_contig100989.1.1|Name=mRNA_L-digitata_M_contig100989.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=243bp|location=Sequence derived from alignment at L-digitata_M_contig100989:3..269+ (Laminaria digitata LdigPH10_18mv male)back to top |