mRNA_L-digitata_M_contig10095.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10095.1.1
Unique NamemRNA_L-digitata_M_contig10095.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: A0A6H5JKQ1_9PHAE (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ1_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 5.380e-23
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 1
Query:    1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVSVSEDLRMVRGRHNT 195
            FKALEHLVR++F L E D M QRYKELLTHVS+VTRNESSDSVNGILDTVSVSEDLRMV   + T
Sbjct:   74 FKALEHLVRIHFLLKEFDQMQQRYKELLTHVSSVTRNESSDSVNGILDTVSVSEDLRMVSQMYET 138          
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: D7FRR5_ECTSI (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR5_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.170e-14
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 1
Query:   58 MLQRYKELLTHVSAVTRNESSDSVNGILDTVSVSEDLRMVRGRHNT 195
            M QRYKELLTHVS+VTRNESSDSVNGILDTVSVSEDLRMV   + T
Sbjct:    1 MQQRYKELLTHVSSVTRNESSDSVNGILDTVSVSEDLRMVSQMYET 46          
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: W7U093_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U093_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.310e-10
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVS 153
            FK LE +V L F+LGEH+ ML  Y+ LL++ SAVTRNES+D++N +LDT+S
Sbjct:   78 FKGLECIVMLLFKLGEHEKMLAAYERLLSYTSAVTRNESTDAINSVLDTIS 128          
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: A0A482SB81_9ARCH (COP9 signalosome complex subunit 2 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SB81_9ARCH)

HSP 1 Score: 62.0 bits (149), Expect = 1.170e-9
Identity = 27/59 (45.76%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVSVSEDLRMV 177
            FKAL++LV +YF LG++D M+ RY  +L +++AVTRNE ++++N ILDT++ S +++++
Sbjct:   15 FKALQYLVVIYFSLGQYDKMVDRYHSMLQYLAAVTRNECTEAINLILDTIASSTNVQVL 73          
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: A0A6A7FRU0_9CRUS (COP9 signalosome complex subunit 2 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FRU0_9CRUS)

HSP 1 Score: 62.0 bits (149), Expect = 1.180e-9
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVSVSEDLRMV 177
            FKALE +V ++FQ   +D M+ RYKELL+  S VTRN+SS+S+N IL+ V  S++  ++
Sbjct:  107 FKALERIVTIHFQFQNYDQMISRYKELLSFASEVTRNDSSESINNILNCVGESKNFELL 165          
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: A0A6G1SJI0_9ACAR (COP9 signalosome complex subunit 2 n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SJI0_9ACAR)

HSP 1 Score: 60.1 bits (144), Expect = 5.590e-9
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHV-SAVTRNESSDSVNGILDTVSVSEDLRMVRGRHNT 195
            FKAL+ ++++ F+LG H+ M+ RYK+LL ++ SAVTRN S  S+N ILD +S S  + +++  + T
Sbjct:   70 FKALKQMIKINFKLGNHEEMMNRYKQLLMYIKSAVTRNYSEKSINSILDYISTSHRMDLLQEFYET 135          
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: A0A836CJA4_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.040e-8
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    7 ALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVSVSEDLRMV 177
            ALE +V L+ +L +   ML+RY+E+L +VS VTRNE +DS+N +LDTVS   DL+ V
Sbjct:   52 ALEQMVILHHRLQQMPQMLERYREMLGYVSRVTRNECTDSINQVLDTVSACTDLKSV 108          
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: A0A061QWV0_9CHLO (COP9 signalosome complex subunit 2 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QWV0_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 1.950e-8
Identity = 27/66 (40.91%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHV-SAVTRNESSDSVNGILDTVSVSEDLRMVRGRHNT 195
            FKAL+ +V++Y++LG HD ML+ Y+++L++V SAVTRN+    +N +LD V  S ++ +++  + T
Sbjct:   62 FKALKQIVKIYYKLGNHDKMLESYRQMLSYVKSAVTRNQGEKKINSLLDHVGQSTNVDLLQEFYET 127          
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: D2V309_NAEGR (COP9 signalosome complex subunit 2 (Fragment) n=3 Tax=Naegleria TaxID=5761 RepID=D2V309_NAEGR)

HSP 1 Score: 57.4 bits (137), Expect = 5.000e-8
Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVSVSEDLRMV 177
            FK+L+ +V+  F+ G  + M+QRYKELLT++S V+RNES  ++N +L  VS S D  M+
Sbjct:   77 FKSLKQMVKTLFKAGMMEQMVQRYKELLTYMSIVSRNESEKAINKVLSMVSSSTDKNML 135          
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: A0A7S4PTK5_9DINO (COP9 signalosome complex subunit 2 n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PTK5_9DINO)

HSP 1 Score: 56.6 bits (135), Expect = 9.380e-8
Identity = 26/56 (46.43%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVSVSEDL 168
            FKAL+++V L  ++G  D M  RY+ELL+++  VTRN++S+++N +LD+VS + DL
Sbjct:  108 FKALQNIVILCARIGRFDEMATRYRELLSYMDQVTRNDASEAINTVLDSVSSASDL 163          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKQ1_9PHAE5.380e-2380.00COP9 signalosome complex subunit 2 n=1 Tax=Ectocar... [more]
D7FRR5_ECTSI2.170e-1484.78COP9 signalosome complex subunit 2 n=1 Tax=Ectocar... [more]
W7U093_9STRA1.310e-1058.82COP9 signalosome complex subunit 2 n=2 Tax=Monodop... [more]
A0A482SB81_9ARCH1.170e-945.76COP9 signalosome complex subunit 2 n=1 Tax=archaeo... [more]
A0A6A7FRU0_9CRUS1.180e-949.15COP9 signalosome complex subunit 2 (Fragment) n=1 ... [more]
A0A6G1SJI0_9ACAR5.590e-943.94COP9 signalosome complex subunit 2 n=1 Tax=Aceria ... [more]
A0A836CJA4_9STRA1.040e-852.63COP9 signalosome complex subunit 2 n=1 Tax=Tribone... [more]
A0A061QWV0_9CHLO1.950e-840.91COP9 signalosome complex subunit 2 n=1 Tax=Tetrase... [more]
D2V309_NAEGR5.000e-847.46COP9 signalosome complex subunit 2 (Fragment) n=3 ... [more]
A0A7S4PTK5_9DINO9.380e-846.43COP9 signalosome complex subunit 2 n=2 Tax=Alexand... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10095contigL-digitata_M_contig10095:1633..2149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FRR5
Preferred nameCOPS2
PFAMsPCI
Model size195
Max annot lvl2759|Eukaryota
KEGG koko:K12176
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000338,GO:0000715,GO:0000909,GO:0002009,GO:0003006,GO:0003674,GO:0003712,GO:0003714,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0007399,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008180,GO:0008230,GO:0008231,GO:0008283,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0014706,GO:0016043,GO:0016070,GO:0016333,GO:0016922,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030163,GO:0030182,GO:0030582,GO:0030584,GO:0030718,GO:0030727,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035914,GO:0036099,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043235,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044798,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051427,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0060537,GO:0060538,GO:0060968,GO:0061061,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070791,GO:0071704,GO:0071840,GO:0075259,GO:0080090,GO:0090052,GO:0090054,GO:0090304,GO:0090575,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue3.55e-15
EggNOG OGsCOG5159@1|root,KOG1464@2759|Eukaryota
Descriptionprotein deneddylation
Cds size195
COG categoryO
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.6682148-CDS-L-digitata_M_contig10095:1632..16981682406612.6682148-CDS-L-digitata_M_contig10095:1632..1698Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10095 1633..1698 +
1682406612.687981-CDS-L-digitata_M_contig10095:2020..21491682406612.687981-CDS-L-digitata_M_contig10095:2020..2149Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10095 2021..2149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10095.1.1prot_L-digitata_M_contig10095.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10095 1633..2149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10095.1.1

>prot_L-digitata_M_contig10095.1.1 ID=prot_L-digitata_M_contig10095.1.1|Name=mRNA_L-digitata_M_contig10095.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=65bp
FKALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTV
SVSEDLRMVRGRHNT
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mRNA from alignment at L-digitata_M_contig10095:1633..2149+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10095.1.1 ID=mRNA_L-digitata_M_contig10095.1.1|Name=mRNA_L-digitata_M_contig10095.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=517bp|location=Sequence derived from alignment at L-digitata_M_contig10095:1633..2149+ (Laminaria digitata LdigPH10_18mv male)
TTCAAGGCGTTGGAGCACCTGGTCAGGCTGTACTTTCAGCTCGGGGAACA CGATCACATGCTGCAGGTAACGAAATGGTATAATATGAAGGATGCTGTTG ATTGTGTATACCTTACTTAGTCACGTAACCCCCCCCCCCCCCCCCTAAAG TTTTCGTTTTCTGTTGGTTGCATCGCCCTATCCGCTAGCCTACCTAGTTT TTAGCTCTTCCAATATATAGAAAACACTTAACCGCCCCCTCCCCTCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCTGCCCTGTCCTCGCCGCGCGAATTTCGTTCGCTCGTGCGCTTGT TCGTTCCTGTGGAAAAAAAACGAAAAAAACAAAAATAGAGGTATAAGGAG CTTCTGACGCACGTAAGCGCGGTGACCCGAAACGAGAGCTCGGACAGCGT GAATGGAATTTTGGACACGGTGTCGGTATCGGAAGACCTGCGCATGGTGA GAGGGAGGCACAACACA
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Coding sequence (CDS) from alignment at L-digitata_M_contig10095:1633..2149+

>mRNA_L-digitata_M_contig10095.1.1 ID=mRNA_L-digitata_M_contig10095.1.1|Name=mRNA_L-digitata_M_contig10095.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=195bp|location=Sequence derived from alignment at L-digitata_M_contig10095:1633..2149+ (Laminaria digitata LdigPH10_18mv male)
TTCAAGGCGTTGGAGCACCTGGTCAGGCTGTACTTTCAGCTCGGGGAACA
CGATCACATGCTGCAGAGGTATAAGGAGCTTCTGACGCACGTAAGCGCGG
TGACCCGAAACGAGAGCTCGGACAGCGTGAATGGAATTTTGGACACGGTG
TCGGTATCGGAAGACCTGCGCATGGTGAGAGGGAGGCACAACACA
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