mRNA_L-digitata_M_contig10095.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: A0A6H5JKQ1_9PHAE (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ1_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 5.380e-23 Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 1
Query: 1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVSVSEDLRMVRGRHNT 195
FKALEHLVR++F L E D M QRYKELLTHVS+VTRNESSDSVNGILDTVSVSEDLRMV + T
Sbjct: 74 FKALEHLVRIHFLLKEFDQMQQRYKELLTHVSSVTRNESSDSVNGILDTVSVSEDLRMVSQMYET 138
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: D7FRR5_ECTSI (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR5_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 2.170e-14 Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 1
Query: 58 MLQRYKELLTHVSAVTRNESSDSVNGILDTVSVSEDLRMVRGRHNT 195
M QRYKELLTHVS+VTRNESSDSVNGILDTVSVSEDLRMV + T
Sbjct: 1 MQQRYKELLTHVSSVTRNESSDSVNGILDTVSVSEDLRMVSQMYET 46
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: W7U093_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U093_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.310e-10 Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 1
Query: 1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVS 153
FK LE +V L F+LGEH+ ML Y+ LL++ SAVTRNES+D++N +LDT+S
Sbjct: 78 FKGLECIVMLLFKLGEHEKMLAAYERLLSYTSAVTRNESTDAINSVLDTIS 128
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: A0A482SB81_9ARCH (COP9 signalosome complex subunit 2 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SB81_9ARCH) HSP 1 Score: 62.0 bits (149), Expect = 1.170e-9 Identity = 27/59 (45.76%), Postives = 48/59 (81.36%), Query Frame = 1
Query: 1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVSVSEDLRMV 177
FKAL++LV +YF LG++D M+ RY +L +++AVTRNE ++++N ILDT++ S +++++
Sbjct: 15 FKALQYLVVIYFSLGQYDKMVDRYHSMLQYLAAVTRNECTEAINLILDTIASSTNVQVL 73
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: A0A6A7FRU0_9CRUS (COP9 signalosome complex subunit 2 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FRU0_9CRUS) HSP 1 Score: 62.0 bits (149), Expect = 1.180e-9 Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVSVSEDLRMV 177
FKALE +V ++FQ +D M+ RYKELL+ S VTRN+SS+S+N IL+ V S++ ++
Sbjct: 107 FKALERIVTIHFQFQNYDQMISRYKELLSFASEVTRNDSSESINNILNCVGESKNFELL 165
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: A0A6G1SJI0_9ACAR (COP9 signalosome complex subunit 2 n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SJI0_9ACAR) HSP 1 Score: 60.1 bits (144), Expect = 5.590e-9 Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHV-SAVTRNESSDSVNGILDTVSVSEDLRMVRGRHNT 195
FKAL+ ++++ F+LG H+ M+ RYK+LL ++ SAVTRN S S+N ILD +S S + +++ + T
Sbjct: 70 FKALKQMIKINFKLGNHEEMMNRYKQLLMYIKSAVTRNYSEKSINSILDYISTSHRMDLLQEFYET 135
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: A0A836CJA4_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA4_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.040e-8 Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 7 ALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVSVSEDLRMV 177
ALE +V L+ +L + ML+RY+E+L +VS VTRNE +DS+N +LDTVS DL+ V
Sbjct: 52 ALEQMVILHHRLQQMPQMLERYREMLGYVSRVTRNECTDSINQVLDTVSACTDLKSV 108
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: A0A061QWV0_9CHLO (COP9 signalosome complex subunit 2 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QWV0_9CHLO) HSP 1 Score: 58.5 bits (140), Expect = 1.950e-8 Identity = 27/66 (40.91%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHV-SAVTRNESSDSVNGILDTVSVSEDLRMVRGRHNT 195
FKAL+ +V++Y++LG HD ML+ Y+++L++V SAVTRN+ +N +LD V S ++ +++ + T
Sbjct: 62 FKALKQIVKIYYKLGNHDKMLESYRQMLSYVKSAVTRNQGEKKINSLLDHVGQSTNVDLLQEFYET 127
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: D2V309_NAEGR (COP9 signalosome complex subunit 2 (Fragment) n=3 Tax=Naegleria TaxID=5761 RepID=D2V309_NAEGR) HSP 1 Score: 57.4 bits (137), Expect = 5.000e-8 Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVSVSEDLRMV 177
FK+L+ +V+ F+ G + M+QRYKELLT++S V+RNES ++N +L VS S D M+
Sbjct: 77 FKSLKQMVKTLFKAGMMEQMVQRYKELLTYMSIVSRNESEKAINKVLSMVSSSTDKNML 135
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Match: A0A7S4PTK5_9DINO (COP9 signalosome complex subunit 2 n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PTK5_9DINO) HSP 1 Score: 56.6 bits (135), Expect = 9.380e-8 Identity = 26/56 (46.43%), Postives = 43/56 (76.79%), Query Frame = 1
Query: 1 FKALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVSVSEDL 168
FKAL+++V L ++G D M RY+ELL+++ VTRN++S+++N +LD+VS + DL
Sbjct: 108 FKALQNIVILCARIGRFDEMATRYRELLSYMDQVTRNDASEAINTVLDSVSSASDL 163 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10095.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10095.1.1 >prot_L-digitata_M_contig10095.1.1 ID=prot_L-digitata_M_contig10095.1.1|Name=mRNA_L-digitata_M_contig10095.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=65bp FKALEHLVRLYFQLGEHDHMLQRYKELLTHVSAVTRNESSDSVNGILDTVback to top mRNA from alignment at L-digitata_M_contig10095:1633..2149+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10095.1.1 ID=mRNA_L-digitata_M_contig10095.1.1|Name=mRNA_L-digitata_M_contig10095.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=517bp|location=Sequence derived from alignment at L-digitata_M_contig10095:1633..2149+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10095:1633..2149+ >mRNA_L-digitata_M_contig10095.1.1 ID=mRNA_L-digitata_M_contig10095.1.1|Name=mRNA_L-digitata_M_contig10095.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=195bp|location=Sequence derived from alignment at L-digitata_M_contig10095:1633..2149+ (Laminaria digitata LdigPH10_18mv male)back to top |