mRNA_L-digitata_M_contig10088.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10088.1.1
Unique NamemRNA_L-digitata_M_contig10088.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10088.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10088contigL-digitata_M_contig10088:653..1356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size706
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.794027-CDS-L-digitata_M_contig10088:652..10451682406611.794027-CDS-L-digitata_M_contig10088:652..1045Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10088 653..1045 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.8026173-UTR-L-digitata_M_contig10088:1045..13561682406611.8026173-UTR-L-digitata_M_contig10088:1045..1356Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10088 1046..1356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10088.1.1prot_L-digitata_M_contig10088.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10088 653..1045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10088.1.1

>prot_L-digitata_M_contig10088.1.1 ID=prot_L-digitata_M_contig10088.1.1|Name=mRNA_L-digitata_M_contig10088.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=131bp
MSALAAPACAFAPPPSVFSRHPCGGCPLSRVAWPRIVTGGATLGQNNRNK
RKRPNNYGVYSIKSSIGVGSSSSSNSSSKSKAWQAVPYRSSRTLAEKIRN
LTEPRLTLLLRHAGEHDGEVFSGAANADADA
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mRNA from alignment at L-digitata_M_contig10088:653..1356-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10088.1.1 ID=mRNA_L-digitata_M_contig10088.1.1|Name=mRNA_L-digitata_M_contig10088.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=704bp|location=Sequence derived from alignment at L-digitata_M_contig10088:653..1356- (Laminaria digitata LdigPH10_18mv male)
TCACACCTCTTGACATCTTGACATCTTTCGTAGCGACGACGAGTGACGAC
GAGACTCTAGCACCACCGCTAGGTCTGCACGGTGAGCTGTGCGAGAGGGA
TCCGCTTGCGGCACCCCCCGCCTAGGCCACCTCAGAGGTATGTTACGTAG
ACGTACCAGGTACGACGAAGACGGAATATCTGCCGTTAGTTTTCTTGTTT
TCTCTCGTGTTTTCGTGATTTCTGAAACGCCAGAACGCCAATGCGGTCTA
TTGGAACTCCCCAAAATGTTCTTCACAGCAGGAATTTCAGGAGACAGAGA
GCACTTCGCTGATGTCTGCGCTAGCTGCTCCAGCGTGTGCTTTCGCTCCA
CCTCCAAGCGTCTTCTCGCGCCACCCCTGCGGAGGCTGTCCGTTGTCTCG
TGTGGCCTGGCCGCGCATAGTCACTGGTGGCGCAACTCTTGGTCAAAACA
ACAGGAACAAACGAAAGCGACCGAATAATTATGGTGTGTATTCGATAAAG
TCATCGATCGGTGTTGGCAGCAGCAGCAGCAGCAACAGCAGCAGCAAGAG
CAAGGCATGGCAAGCCGTCCCTTACCGCTCCTCGCGCACGCTGGCGGAGA
AAATAAGGAATCTGACGGAACCGCGACTGACATTGCTACTGCGGCATGCC
GGCGAACATGATGGCGAGGTGTTTTCCGGCGCTGCCAATGCTGATGCCGA
TGCC
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Coding sequence (CDS) from alignment at L-digitata_M_contig10088:653..1356-

>mRNA_L-digitata_M_contig10088.1.1 ID=mRNA_L-digitata_M_contig10088.1.1|Name=mRNA_L-digitata_M_contig10088.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=393bp|location=Sequence derived from alignment at L-digitata_M_contig10088:653..1356- (Laminaria digitata LdigPH10_18mv male)
ATGTCTGCGCTAGCTGCTCCAGCGTGTGCTTTCGCTCCACCTCCAAGCGT
CTTCTCGCGCCACCCCTGCGGAGGCTGTCCGTTGTCTCGTGTGGCCTGGC
CGCGCATAGTCACTGGTGGCGCAACTCTTGGTCAAAACAACAGGAACAAA
CGAAAGCGACCGAATAATTATGGTGTGTATTCGATAAAGTCATCGATCGG
TGTTGGCAGCAGCAGCAGCAGCAACAGCAGCAGCAAGAGCAAGGCATGGC
AAGCCGTCCCTTACCGCTCCTCGCGCACGCTGGCGGAGAAAATAAGGAAT
CTGACGGAACCGCGACTGACATTGCTACTGCGGCATGCCGGCGAACATGA
TGGCGAGGTGTTTTCCGGCGCTGCCAATGCTGATGCCGATGCC
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