mRNA_L-digitata_M_contig100862.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100862.2.1
Unique NamemRNA_L-digitata_M_contig100862.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A2D7FJ37_9PROT (DNA-binding transcriptional regulator NtrC n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FJ37_9PROT)

HSP 1 Score: 257 bits (656), Expect = 1.380e-81
Identity = 128/150 (85.33%), Postives = 140/150 (93.33%), Query Frame = 1
Query:    1 MNEASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDPSEVNIATPLDGEEKLPLIGRSVAMQNI 450
            M++ +TILVADDDRA+R VLERALT+QGYDVRLT N+RTLWSWV DGEGD+V+TDVVMPDENGLDLVPRIR++RPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTEL+SVVERGLLD SE  I+ PL GEEKLPLIGRS AMQNI
Sbjct:    1 MSKKATILVADDDRAIRIVLERALTQQGYDVRLTGNSRTLWSWVEDGEGDIVVTDVVMPDENGLDLVPRIRQLRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELISVVERGLLDSSEPTISAPLGGEEKLPLIGRSAAMQNI 150          
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A520NRT0_9PROT (DNA-binding transcriptional regulator NtrC n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NRT0_9PROT)

HSP 1 Score: 241 bits (616), Expect = 1.390e-75
Identity = 121/150 (80.67%), Postives = 135/150 (90.00%), Query Frame = 1
Query:    1 MNEASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDPSEVNIATPLDGEEKLPLIGRSVAMQNI 450
            MN  STIL+ADDDRA+RTVLERAL R+GYDV+L+ NARTLWSWVADGEGDLVITDVVMPDENGLDLVP+IR++RPELK+IVMSAQSTLLTAVKANERGAYEYLPKPFDLTEL++VV+R L D SEV  A P +  E LPLIGRS AMQ+I
Sbjct:    1 MNNPSTILIADDDRAIRTVLERALVREGYDVKLSGNARTLWSWVADGEGDLVITDVVMPDENGLDLVPQIRKLRPELKVIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELLAVVDRALRDTSEVGPALPDETTEHLPLIGRSTAMQSI 150          
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A2S6QCF9_9PROT (DNA-binding transcriptional regulator NtrC n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QCF9_9PROT)

HSP 1 Score: 228 bits (580), Expect = 3.420e-70
Identity = 114/150 (76.00%), Postives = 129/150 (86.00%), Query Frame = 1
Query:    1 MNEASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDPSEVNIATPLDGEEKLPLIGRSVAMQNI 450
            M+E ST+L+ADDDRA+RTVLERAL R+GYDV+++ NARTLWSWVA GEGDLVITDV+MPDENGLDLV RIRE RPELK+IVMSAQSTLLTAVKANERGAYEYLPKPFDL EL++VVER L + ++     P    EKLPLIGRS  MQNI
Sbjct:    1 MSEISTVLIADDDRAIRTVLERALIREGYDVKVSGNARTLWSWVAGGEGDLVITDVIMPDENGLDLVLRIREFRPELKVIVMSAQSTLLTAVKANERGAYEYLPKPFDLPELLAVVERALRERTDTVPVVPAQQIEKLPLIGRSAPMQNI 150          
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: UPI0019A8F141 (Response regulator n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=UPI0019A8F141)

HSP 1 Score: 209 bits (532), Expect = 4.270e-67
Identity = 106/148 (71.62%), Postives = 122/148 (82.43%), Query Frame = 1
Query:   16 TILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDP---SEVNIATPLDGEEKLPLIGRSVAMQNI 450
            T+LVADDDR++RTVL +AL R GY VR T NA TLW WV DGEGDLVITDVVMPDENGLDL+PRI+ IRPEL+++VMSAQSTL+TAVKA +RGA+EYLPKPFDL EL++VV R L  P   S+   A P D EE+LPLIGRSVAMQ I
Sbjct:    5 TVLVADDDRSIRTVLTQALGRSGYQVRCTGNAATLWRWVEDGEGDLVITDVVMPDENGLDLIPRIKRIRPELRVVVMSAQSTLMTAVKAAQRGAFEYLPKPFDLKELLAVVGRALQAPAPASDTPPAEPRDAEERLPLIGRSVAMQEI 152          
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A522W5H3_9PROT (Response regulator (Fragment) n=1 Tax=Magnetospirillum sp. TaxID=31872 RepID=A0A522W5H3_9PROT)

HSP 1 Score: 207 bits (528), Expect = 7.430e-65
Identity = 104/151 (68.87%), Postives = 124/151 (82.12%), Query Frame = 1
Query:    1 MNEASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDP-SEVNIATPLDGEEKLPLIGRSVAMQNI 450
            M   +TIL+ADDDR +RTVL +AL R GY+VR T NA TLW WVADGEGDLVITDVVMPDENGLDL+PRI++IRP+L+I+ MSAQSTLLTAVKA +RGA+EYLPKPFDL ++++VV R L  P ++ + A   DGEE LPLIGRS AMQ I
Sbjct:    1 MTHPATILIADDDRGIRTVLTQALNRAGYEVRTTGNAATLWRWVADGEGDLVITDVVMPDENGLDLIPRIKKIRPDLRIVAMSAQSTLLTAVKAAQRGAFEYLPKPFDLKDVVNVVGRALAAPKADPSFAVQSDGEEALPLIGRSSAMQEI 151          
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A840Y3X8_9PROT (DNA-binding transcriptional regulator NtrC n=13 Tax=Roseomonas TaxID=125216 RepID=A0A840Y3X8_9PROT)

HSP 1 Score: 212 bits (540), Expect = 3.290e-64
Identity = 105/150 (70.00%), Postives = 120/150 (80.00%), Query Frame = 1
Query:    1 MNEASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDPSEVNIATPLDGEEKLPLIGRSVAMQNI 450
            MNE  TIL+ADDDRA+RTVL +AL R GY VR TS+A TLW WV DGEGDLVITDVVMPDENGLDLVPRIR +RPEL+++VMSAQST  TAVKA +RGA+EYLPKPFDL EL+ VVER L  P+E +        E+LPL+GRS AMQ I
Sbjct:    1 MNEPRTILIADDDRAIRTVLSQALARSGYQVRATSSAATLWRWVEDGEGDLVITDVVMPDENGLDLVPRIRRVRPELRVVVMSAQSTFATAVKATQRGAFEYLPKPFDLKELLGVVERALAAPAEPSAPAEEPEAERLPLVGRSAAMQEI 150          
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A2E7QGE2_9PROT (Nitrogen regulation protein NR(I) (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QGE2_9PROT)

HSP 1 Score: 203 bits (517), Expect = 6.280e-64
Identity = 98/147 (66.67%), Postives = 126/147 (85.71%), Query Frame = 1
Query:   10 ASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDPSEVNIATPLDGEEKLPLIGRSVAMQNI 450
            A+TIL+ADDD A+RTVL++AL R+GY+V+ T NA TLW WV++GEG+LVITDVVMPDENGLDL+PRI++IRPEL++IVMSAQ+TL+TAV A +RGA++YLPKPFDL EL +VV+R L    E   ++  +GEE+LPLIGRSVAMQ +
Sbjct:    3 ATTILIADDDGAIRTVLDQALGREGYEVKTTGNAATLWKWVSEGEGNLVITDVVMPDENGLDLLPRIKKIRPELRVIVMSAQNTLMTAVNATQRGAFDYLPKPFDLNELTNVVKRALQASKESQGSSAPEGEEQLPLIGRSVAMQEV 149          
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A7W9ZEE1_NOVIT (DNA-binding transcriptional regulator NtrC n=2 Tax=Novispirillum itersonii TaxID=189 RepID=A0A7W9ZEE1_NOVIT)

HSP 1 Score: 210 bits (535), Expect = 1.750e-63
Identity = 106/148 (71.62%), Postives = 126/148 (85.14%), Query Frame = 1
Query:   10 ASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGL-LDPSEVNIATPLDGEEKLPLIGRSVAMQNI 450
            +STILVADDD  +RTVL +ALTR GYDVR TSNA TLW WV+DG+GDLVITDVVMPDENGLDL+PRI+++RP+L++IVMS Q+TLLTAVKANERGA+EYLPKPFDL EL++VV R L L  S  + A   + EE+LPLIGRS AMQ+I
Sbjct:    2 SSTILVADDDHGIRTVLTQALTRAGYDVRTTSNAATLWRWVSDGDGDLVITDVVMPDENGLDLLPRIKKLRPDLRVIVMSVQNTLLTAVKANERGAFEYLPKPFDLQELVAVVRRALSLPKSAPSAAAVAEDEERLPLIGRSTAMQDI 149          
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A2D6M5S5_9PROT (Nitrogen regulation protein NR(I) (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6M5S5_9PROT)

HSP 1 Score: 203 bits (517), Expect = 1.820e-63
Identity = 103/149 (69.13%), Postives = 126/149 (84.56%), Query Frame = 1
Query:   10 ASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDP-SEVNIATPLD-GEEKLPLIGRSVAMQNI 450
            A+TILVADDD+A+RTV+ +AL R+GY+VR T NA TLW WV++G+GDLVITDVVMPDENGLDL+PRIR+IRP L+I+VMSAQ+TLLTAVKA ERGA+EYLPKPFD+ EL  VV+R L +P S+   A  ++ G+E LPLIGRS AMQ I
Sbjct:    3 AATILVADDDKAIRTVITQALGREGYEVRTTGNAATLWRWVSEGDGDLVITDVVMPDENGLDLIPRIRKIRPNLRILVMSAQNTLLTAVKATERGAFEYLPKPFDINELTQVVQRALSEPKSDSPAAQEIEVGDEALPLIGRSPAMQEI 151          
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: K9GP44_9PROT (DNA-binding transcriptional regulator NtrC n=2 Tax=Caenispirillum TaxID=414051 RepID=K9GP44_9PROT)

HSP 1 Score: 209 bits (533), Expect = 3.890e-63
Identity = 107/148 (72.30%), Postives = 121/148 (81.76%), Query Frame = 1
Query:   13 STILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERG--LLDPSEVNIATPLDGEEKLPLIGRSVAMQNI 450
            STILVADDD  +RTVL +AL R GYDVR T NA TLW WV+DGEGDLVITDVVMPDENGLDL+PRI++IRP+++IIVMSAQ+TLLTAVKA ERGA+EYLPKPFDLTEL++VV R   L  PS    +   D EE LPLIGRS AMQ I
Sbjct:    4 STILVADDDHGIRTVLSQALGRAGYDVRTTGNAATLWRWVSDGEGDLVITDVVMPDENGLDLIPRIKKIRPDMRIIVMSAQNTLLTAVKATERGAFEYLPKPFDLTELVNVVNRAISLPKPSTTGASVAADDEEALPLIGRSTAMQEI 151          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FJ37_9PROT1.380e-8185.33DNA-binding transcriptional regulator NtrC n=1 Tax... [more]
A0A520NRT0_9PROT1.390e-7580.67DNA-binding transcriptional regulator NtrC n=2 Tax... [more]
A0A2S6QCF9_9PROT3.420e-7076.00DNA-binding transcriptional regulator NtrC n=1 Tax... [more]
UPI0019A8F1414.270e-6771.62Response regulator n=1 Tax=Gemmatimonadaceae bacte... [more]
A0A522W5H3_9PROT7.430e-6568.87Response regulator (Fragment) n=1 Tax=Magnetospiri... [more]
A0A840Y3X8_9PROT3.290e-6470.00DNA-binding transcriptional regulator NtrC n=13 Ta... [more]
A0A2E7QGE2_9PROT6.280e-6466.67Nitrogen regulation protein NR(I) (Fragment) n=1 T... [more]
A0A7W9ZEE1_NOVIT1.750e-6371.62DNA-binding transcriptional regulator NtrC n=2 Tax... [more]
A0A2D6M5S5_9PROT1.820e-6369.13Nitrogen regulation protein NR(I) (Fragment) n=1 T... [more]
K9GP44_9PROT3.890e-6372.30DNA-binding transcriptional regulator NtrC n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100862contigL-digitata_M_contig100862:485..934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1380394.JADL01000005_gene5484
Preferred namentrC
PFAMsHTH_8,Response_reg,Sigma54_activat
Model size450
Max annot lvl204441|Rhodospirillales
KEGG koko:K07712
KEGG Pathwayko02020,map02020
KEGG ModuleM00497
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.04e-66
EggNOG OGsCOG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQPG@28211|Alphaproteobacteria,2JPK4@204441|Rhodospirillales
DescriptionCOG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Cds size450
COG categoryT
BRITEko00000,ko00001,ko00002,ko02022
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.736259-CDS-L-digitata_M_contig100862:484..9341682406611.736259-CDS-L-digitata_M_contig100862:484..934Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100862 485..934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100862.2.1prot_L-digitata_M_contig100862.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100862 485..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100862.2.1

>prot_L-digitata_M_contig100862.2.1 ID=prot_L-digitata_M_contig100862.2.1|Name=mRNA_L-digitata_M_contig100862.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=150bp
MNEASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGD
LVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAY
EYLPKPFDLTELMSVVERGLLDPSEVNIATPLDGEEKLPLIGRSVAMQNI
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mRNA from alignment at L-digitata_M_contig100862:485..934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100862.2.1 ID=mRNA_L-digitata_M_contig100862.2.1|Name=mRNA_L-digitata_M_contig100862.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=450bp|location=Sequence derived from alignment at L-digitata_M_contig100862:485..934+ (Laminaria digitata LdigPH10_18mv male)
ATGAACGAGGCCTCCACAATTCTGGTTGCCGATGACGATCGGGCGGTCAG AACCGTTCTGGAGCGCGCGCTGACGCGGCAGGGTTATGATGTCCGGCTGA CGAGCAATGCGCGAACGCTCTGGTCCTGGGTTGCCGATGGAGAAGGCGAT TTGGTCATCACCGACGTGGTGATGCCGGATGAAAACGGTCTCGACCTCGT ACCGCGTATCCGCGAAATCCGCCCCGAGCTGAAAATCATCGTTATGAGCG CCCAAAGCACGCTTCTGACGGCGGTAAAGGCGAATGAGCGCGGTGCATAC GAATATCTGCCGAAACCTTTCGACCTTACCGAGCTGATGAGTGTCGTGGA GCGTGGACTGCTGGATCCGTCTGAAGTGAATATCGCCACGCCCCTCGACG GCGAGGAAAAACTTCCCCTGATTGGCCGTTCGGTGGCCATGCAGAACATT
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Coding sequence (CDS) from alignment at L-digitata_M_contig100862:485..934+

>mRNA_L-digitata_M_contig100862.2.1 ID=mRNA_L-digitata_M_contig100862.2.1|Name=mRNA_L-digitata_M_contig100862.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=450bp|location=Sequence derived from alignment at L-digitata_M_contig100862:485..934+ (Laminaria digitata LdigPH10_18mv male)
ATGAACGAGGCCTCCACAATTCTGGTTGCCGATGACGATCGGGCGGTCAG
AACCGTTCTGGAGCGCGCGCTGACGCGGCAGGGTTATGATGTCCGGCTGA
CGAGCAATGCGCGAACGCTCTGGTCCTGGGTTGCCGATGGAGAAGGCGAT
TTGGTCATCACCGACGTGGTGATGCCGGATGAAAACGGTCTCGACCTCGT
ACCGCGTATCCGCGAAATCCGCCCCGAGCTGAAAATCATCGTTATGAGCG
CCCAAAGCACGCTTCTGACGGCGGTAAAGGCGAATGAGCGCGGTGCATAC
GAATATCTGCCGAAACCTTTCGACCTTACCGAGCTGATGAGTGTCGTGGA
GCGTGGACTGCTGGATCCGTCTGAAGTGAATATCGCCACGCCCCTCGACG
GCGAGGAAAAACTTCCCCTGATTGGCCGTTCGGTGGCCATGCAGAACATT
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