mRNA_L-digitata_M_contig100862.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A2D7FJ37_9PROT (DNA-binding transcriptional regulator NtrC n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FJ37_9PROT) HSP 1 Score: 257 bits (656), Expect = 1.380e-81 Identity = 128/150 (85.33%), Postives = 140/150 (93.33%), Query Frame = 1
Query: 1 MNEASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDPSEVNIATPLDGEEKLPLIGRSVAMQNI 450
M++ +TILVADDDRA+R VLERALT+QGYDVRLT N+RTLWSWV DGEGD+V+TDVVMPDENGLDLVPRIR++RPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTEL+SVVERGLLD SE I+ PL GEEKLPLIGRS AMQNI
Sbjct: 1 MSKKATILVADDDRAIRIVLERALTQQGYDVRLTGNSRTLWSWVEDGEGDIVVTDVVMPDENGLDLVPRIRQLRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELISVVERGLLDSSEPTISAPLGGEEKLPLIGRSAAMQNI 150
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A520NRT0_9PROT (DNA-binding transcriptional regulator NtrC n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NRT0_9PROT) HSP 1 Score: 241 bits (616), Expect = 1.390e-75 Identity = 121/150 (80.67%), Postives = 135/150 (90.00%), Query Frame = 1
Query: 1 MNEASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDPSEVNIATPLDGEEKLPLIGRSVAMQNI 450
MN STIL+ADDDRA+RTVLERAL R+GYDV+L+ NARTLWSWVADGEGDLVITDVVMPDENGLDLVP+IR++RPELK+IVMSAQSTLLTAVKANERGAYEYLPKPFDLTEL++VV+R L D SEV A P + E LPLIGRS AMQ+I
Sbjct: 1 MNNPSTILIADDDRAIRTVLERALVREGYDVKLSGNARTLWSWVADGEGDLVITDVVMPDENGLDLVPQIRKLRPELKVIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELLAVVDRALRDTSEVGPALPDETTEHLPLIGRSTAMQSI 150
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A2S6QCF9_9PROT (DNA-binding transcriptional regulator NtrC n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QCF9_9PROT) HSP 1 Score: 228 bits (580), Expect = 3.420e-70 Identity = 114/150 (76.00%), Postives = 129/150 (86.00%), Query Frame = 1
Query: 1 MNEASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDPSEVNIATPLDGEEKLPLIGRSVAMQNI 450
M+E ST+L+ADDDRA+RTVLERAL R+GYDV+++ NARTLWSWVA GEGDLVITDV+MPDENGLDLV RIRE RPELK+IVMSAQSTLLTAVKANERGAYEYLPKPFDL EL++VVER L + ++ P EKLPLIGRS MQNI
Sbjct: 1 MSEISTVLIADDDRAIRTVLERALIREGYDVKVSGNARTLWSWVAGGEGDLVITDVIMPDENGLDLVLRIREFRPELKVIVMSAQSTLLTAVKANERGAYEYLPKPFDLPELLAVVERALRERTDTVPVVPAQQIEKLPLIGRSAPMQNI 150
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: UPI0019A8F141 (Response regulator n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=UPI0019A8F141) HSP 1 Score: 209 bits (532), Expect = 4.270e-67 Identity = 106/148 (71.62%), Postives = 122/148 (82.43%), Query Frame = 1
Query: 16 TILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDP---SEVNIATPLDGEEKLPLIGRSVAMQNI 450
T+LVADDDR++RTVL +AL R GY VR T NA TLW WV DGEGDLVITDVVMPDENGLDL+PRI+ IRPEL+++VMSAQSTL+TAVKA +RGA+EYLPKPFDL EL++VV R L P S+ A P D EE+LPLIGRSVAMQ I
Sbjct: 5 TVLVADDDRSIRTVLTQALGRSGYQVRCTGNAATLWRWVEDGEGDLVITDVVMPDENGLDLIPRIKRIRPELRVVVMSAQSTLMTAVKAAQRGAFEYLPKPFDLKELLAVVGRALQAPAPASDTPPAEPRDAEERLPLIGRSVAMQEI 152
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A522W5H3_9PROT (Response regulator (Fragment) n=1 Tax=Magnetospirillum sp. TaxID=31872 RepID=A0A522W5H3_9PROT) HSP 1 Score: 207 bits (528), Expect = 7.430e-65 Identity = 104/151 (68.87%), Postives = 124/151 (82.12%), Query Frame = 1
Query: 1 MNEASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDP-SEVNIATPLDGEEKLPLIGRSVAMQNI 450
M +TIL+ADDDR +RTVL +AL R GY+VR T NA TLW WVADGEGDLVITDVVMPDENGLDL+PRI++IRP+L+I+ MSAQSTLLTAVKA +RGA+EYLPKPFDL ++++VV R L P ++ + A DGEE LPLIGRS AMQ I
Sbjct: 1 MTHPATILIADDDRGIRTVLTQALNRAGYEVRTTGNAATLWRWVADGEGDLVITDVVMPDENGLDLIPRIKKIRPDLRIVAMSAQSTLLTAVKAAQRGAFEYLPKPFDLKDVVNVVGRALAAPKADPSFAVQSDGEEALPLIGRSSAMQEI 151
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A840Y3X8_9PROT (DNA-binding transcriptional regulator NtrC n=13 Tax=Roseomonas TaxID=125216 RepID=A0A840Y3X8_9PROT) HSP 1 Score: 212 bits (540), Expect = 3.290e-64 Identity = 105/150 (70.00%), Postives = 120/150 (80.00%), Query Frame = 1
Query: 1 MNEASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDPSEVNIATPLDGEEKLPLIGRSVAMQNI 450
MNE TIL+ADDDRA+RTVL +AL R GY VR TS+A TLW WV DGEGDLVITDVVMPDENGLDLVPRIR +RPEL+++VMSAQST TAVKA +RGA+EYLPKPFDL EL+ VVER L P+E + E+LPL+GRS AMQ I
Sbjct: 1 MNEPRTILIADDDRAIRTVLSQALARSGYQVRATSSAATLWRWVEDGEGDLVITDVVMPDENGLDLVPRIRRVRPELRVVVMSAQSTFATAVKATQRGAFEYLPKPFDLKELLGVVERALAAPAEPSAPAEEPEAERLPLVGRSAAMQEI 150
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A2E7QGE2_9PROT (Nitrogen regulation protein NR(I) (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QGE2_9PROT) HSP 1 Score: 203 bits (517), Expect = 6.280e-64 Identity = 98/147 (66.67%), Postives = 126/147 (85.71%), Query Frame = 1
Query: 10 ASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDPSEVNIATPLDGEEKLPLIGRSVAMQNI 450
A+TIL+ADDD A+RTVL++AL R+GY+V+ T NA TLW WV++GEG+LVITDVVMPDENGLDL+PRI++IRPEL++IVMSAQ+TL+TAV A +RGA++YLPKPFDL EL +VV+R L E ++ +GEE+LPLIGRSVAMQ +
Sbjct: 3 ATTILIADDDGAIRTVLDQALGREGYEVKTTGNAATLWKWVSEGEGNLVITDVVMPDENGLDLLPRIKKIRPELRVIVMSAQNTLMTAVNATQRGAFDYLPKPFDLNELTNVVKRALQASKESQGSSAPEGEEQLPLIGRSVAMQEV 149
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A7W9ZEE1_NOVIT (DNA-binding transcriptional regulator NtrC n=2 Tax=Novispirillum itersonii TaxID=189 RepID=A0A7W9ZEE1_NOVIT) HSP 1 Score: 210 bits (535), Expect = 1.750e-63 Identity = 106/148 (71.62%), Postives = 126/148 (85.14%), Query Frame = 1
Query: 10 ASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGL-LDPSEVNIATPLDGEEKLPLIGRSVAMQNI 450
+STILVADDD +RTVL +ALTR GYDVR TSNA TLW WV+DG+GDLVITDVVMPDENGLDL+PRI+++RP+L++IVMS Q+TLLTAVKANERGA+EYLPKPFDL EL++VV R L L S + A + EE+LPLIGRS AMQ+I
Sbjct: 2 SSTILVADDDHGIRTVLTQALTRAGYDVRTTSNAATLWRWVSDGDGDLVITDVVMPDENGLDLLPRIKKLRPDLRVIVMSVQNTLLTAVKANERGAFEYLPKPFDLQELVAVVRRALSLPKSAPSAAAVAEDEERLPLIGRSTAMQDI 149
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: A0A2D6M5S5_9PROT (Nitrogen regulation protein NR(I) (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6M5S5_9PROT) HSP 1 Score: 203 bits (517), Expect = 1.820e-63 Identity = 103/149 (69.13%), Postives = 126/149 (84.56%), Query Frame = 1
Query: 10 ASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERGLLDP-SEVNIATPLD-GEEKLPLIGRSVAMQNI 450
A+TILVADDD+A+RTV+ +AL R+GY+VR T NA TLW WV++G+GDLVITDVVMPDENGLDL+PRIR+IRP L+I+VMSAQ+TLLTAVKA ERGA+EYLPKPFD+ EL VV+R L +P S+ A ++ G+E LPLIGRS AMQ I
Sbjct: 3 AATILVADDDKAIRTVITQALGREGYEVRTTGNAATLWRWVSEGDGDLVITDVVMPDENGLDLIPRIRKIRPNLRILVMSAQNTLLTAVKATERGAFEYLPKPFDINELTQVVQRALSEPKSDSPAAQEIEVGDEALPLIGRSPAMQEI 151
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Match: K9GP44_9PROT (DNA-binding transcriptional regulator NtrC n=2 Tax=Caenispirillum TaxID=414051 RepID=K9GP44_9PROT) HSP 1 Score: 209 bits (533), Expect = 3.890e-63 Identity = 107/148 (72.30%), Postives = 121/148 (81.76%), Query Frame = 1
Query: 13 STILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDLVITDVVMPDENGLDLVPRIREIRPELKIIVMSAQSTLLTAVKANERGAYEYLPKPFDLTELMSVVERG--LLDPSEVNIATPLDGEEKLPLIGRSVAMQNI 450
STILVADDD +RTVL +AL R GYDVR T NA TLW WV+DGEGDLVITDVVMPDENGLDL+PRI++IRP+++IIVMSAQ+TLLTAVKA ERGA+EYLPKPFDLTEL++VV R L PS + D EE LPLIGRS AMQ I
Sbjct: 4 STILVADDDHGIRTVLSQALGRAGYDVRTTGNAATLWRWVSDGEGDLVITDVVMPDENGLDLIPRIKKIRPDMRIIVMSAQNTLLTAVKATERGAFEYLPKPFDLTELVNVVNRAISLPKPSTTGASVAADDEEALPLIGRSTAMQEI 151 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100862.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100862.2.1 >prot_L-digitata_M_contig100862.2.1 ID=prot_L-digitata_M_contig100862.2.1|Name=mRNA_L-digitata_M_contig100862.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=150bp MNEASTILVADDDRAVRTVLERALTRQGYDVRLTSNARTLWSWVADGEGDback to top mRNA from alignment at L-digitata_M_contig100862:485..934+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100862.2.1 ID=mRNA_L-digitata_M_contig100862.2.1|Name=mRNA_L-digitata_M_contig100862.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=450bp|location=Sequence derived from alignment at L-digitata_M_contig100862:485..934+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100862:485..934+ >mRNA_L-digitata_M_contig100862.2.1 ID=mRNA_L-digitata_M_contig100862.2.1|Name=mRNA_L-digitata_M_contig100862.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=450bp|location=Sequence derived from alignment at L-digitata_M_contig100862:485..934+ (Laminaria digitata LdigPH10_18mv male)back to top |