mRNA_L-digitata_M_contig100835.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: A0A0K1EDP5_CHOCO (P/Homo B domain-containing protein n=2 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1EDP5_CHOCO) HSP 1 Score: 65.9 bits (159), Expect = 5.220e-10 Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 1
Query: 1 ICGDGQIEGMEQCDDKNFLPNDGCTSCMIDPGWVCVLAPSRCTDGPLVQYVDG 159
+CGDG++EG E CDD N PNDGCTSC ID G++C PS C + +G
Sbjct: 68 VCGDGRVEGAEACDDGNTTPNDGCTSCGIDDGFLCQGQPSVCELSTRIVVTEG 120
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: A0CAA5_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0CAA5_PARTE) HSP 1 Score: 60.1 bits (144), Expect = 9.580e-8 Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1
Query: 4 CGDGQIEGMEQCDDKNFLPNDGCTSCMIDPGWVCV 108
CGDG I G EQCDD N +P DGCT+C+IDPG+ C+
Sbjct: 1344 CGDGLILGSEQCDDVNTIPRDGCTNCLIDPGFNCI 1378
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: A0A2D0R7Q7_ICTPU (pappalysin-2 n=4 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0R7Q7_ICTPU) HSP 1 Score: 59.7 bits (143), Expect = 1.300e-7 Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1
Query: 1 ICGDGQIEGMEQCDDKNFLPNDGCTS-CMIDPGWVCVLAPSRC 126
CGDGQ++GME+CDD N L DGC+ C ++PG+ CV PS C
Sbjct: 1107 FCGDGQLQGMEECDDGNLLDRDGCSKKCSMEPGFNCVGQPSHC 1149
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: UPI0013D6DCF2 (EGF domain-containing protein n=1 Tax=Myxococcus vastator TaxID=2709664 RepID=UPI0013D6DCF2) HSP 1 Score: 59.3 bits (142), Expect = 1.540e-7 Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1
Query: 1 ICGDGQIEGMEQCDDKNFLPNDGC-TSCMIDPGWVCVLAPSRCTD 132
+CG+G++ EQCDD N P DGC SC ++PG+ C APS CTD
Sbjct: 188 LCGNGELNAGEQCDDGNVAPGDGCGASCQVEPGYTCSGAPSVCTD 232
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: A0A8C9S6E6_SCLFO (Pappalysin 2 n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9S6E6_SCLFO) HSP 1 Score: 58.9 bits (141), Expect = 2.400e-7 Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1
Query: 1 ICGDGQIEGMEQCDDKNFLPNDGCTS-CMIDPGWVCVLAPSRCTDGPLVQYVDGANPNCDE 180
CGDGQ++G EQCDD+N L DGC+ C+++PG+ C PS+C YV + C+E
Sbjct: 1090 FCGDGQLQGEEQCDDENLLDGDGCSKKCLMEPGFNCDGEPSQC-------YVFDGDGVCEE 1143
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: UPI001EE9CF3D (pappalysin-2 n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI001EE9CF3D) HSP 1 Score: 58.9 bits (141), Expect = 2.400e-7 Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1
Query: 1 ICGDGQIEGMEQCDDKNFLPNDGCTS-CMIDPGWVCVLAPSRCTDGPLVQYVDG 159
CGDGQ++GME+CDD N L DGC+ C +PG+ CV PS C Y DG
Sbjct: 1104 FCGDGQLQGMEECDDGNLLDRDGCSKKCSKEPGFNCVGQPSHC------YYYDG 1151
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: A0A842WRB7_9ARCH (Uncharacterized protein n=2 Tax=Archaea TaxID=2157 RepID=A0A842WRB7_9ARCH) HSP 1 Score: 58.9 bits (141), Expect = 2.450e-7 Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 1
Query: 1 ICGDGQIEGMEQCDDKNFLPNDGCT-SCMIDPGWVCVLAPSRCTDGPLVQYVDGANPN 171
+CGDG I+G E+CDD N DGC+ SC I+PG+VC PS C + VD PN
Sbjct: 2697 MCGDGVIDGAEECDDDNMNNGDGCSDSCEIEPGYVCTGEPSSCEQATMS--VDITTPN 2752
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: A0A7J6B450_AMEME (Sushi domain-containing protein n=1 Tax=Ameiurus melas TaxID=219545 RepID=A0A7J6B450_AMEME) HSP 1 Score: 58.2 bits (139), Expect = 4.310e-7 Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1
Query: 1 ICGDGQIEGMEQCDDKNFLPNDGCTS-CMIDPGWVCVLAPSRC 126
CGDGQ++GME+CDD N L DGC+ C +PG+ CV PS C
Sbjct: 408 FCGDGQLQGMEECDDGNLLDRDGCSKKCSKEPGFNCVGQPSHC 450
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: UPI00147F2FC2 (pappalysin-2 isoform X2 n=1 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=UPI00147F2FC2) HSP 1 Score: 58.2 bits (139), Expect = 4.410e-7 Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1
Query: 1 ICGDGQIEGMEQCDDKNFLPNDGCTS-CMIDPGWVCVLAPSRC 126
CGDGQ++G+E+CDD N L DGC+ C ++PG+ CV PS C
Sbjct: 1100 FCGDGQLQGIEECDDGNLLDRDGCSKKCSMEPGFNCVGQPSHC 1142
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Match: A0A836BYW7_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BYW7_9CHLO) HSP 1 Score: 57.8 bits (138), Expect = 5.920e-7 Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 1
Query: 4 CGDGQIEGMEQCDDKNFLPNDGCTS-CMIDPGWVCVLAPSRCTDG 135
CG+G +EG EQCDD DGC++ C I+PGW C +PS CT G
Sbjct: 901 CGNGAVEGAEQCDDGGVTDGDGCSAACRIEPGWTCEGSPSVCTRG 945 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100835.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100835.1.1 >prot_L-digitata_M_contig100835.1.1 ID=prot_L-digitata_M_contig100835.1.1|Name=mRNA_L-digitata_M_contig100835.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=133bp MEQCDDKNFLPNDGCTSCMIDPGWVCVLAPSRCTDGPLVQYVDGANPNCDback to top mRNA from alignment at L-digitata_M_contig100835:38..463- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100835.1.1 ID=mRNA_L-digitata_M_contig100835.1.1|Name=mRNA_L-digitata_M_contig100835.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=426bp|location=Sequence derived from alignment at L-digitata_M_contig100835:38..463- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100835:38..463- >mRNA_L-digitata_M_contig100835.1.1 ID=mRNA_L-digitata_M_contig100835.1.1|Name=mRNA_L-digitata_M_contig100835.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=399bp|location=Sequence derived from alignment at L-digitata_M_contig100835:38..463- (Laminaria digitata LdigPH10_18mv male)back to top |