mRNA_L-digitata_M_contig100822.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100822.3.1
Unique NamemRNA_L-digitata_M_contig100822.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100822.3.1 vs. uniprot
Match: A0A6N7F7E7_9PROT (ZnMc domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7F7E7_9PROT)

HSP 1 Score: 87.8 bits (216), Expect = 1.720e-15
Identity = 51/91 (56.04%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:  367 FSAGFGADTISDFTAGF---DSIDLQALDLADFNALLAATADVSGNAVITLSGNTITLTGVTKSQLLQSDFVGVNPVGTSGNDVINGFDTD 630
            F AGFG DTI DFTAG    D ID+    ++ F++LL + AD+ GNAVITLSGNTITLTGVTKS L   DFV +   GT  +D ++G D D
Sbjct:  514 FGAGFGDDTIGDFTAGAAGDDRIDITWFGISSFSSLLDSIADIGGNAVITLSGNTITLTGVTKSVLHADDFVDIENGGTPDHDTLSGGDGD 604
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BLAST of mRNA_L-digitata_M_contig100822.3.1 vs. uniprot
Match: A0A6N7F4Q4_9PROT (Type I secretion C-terminal target domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7F4Q4_9PROT)

HSP 1 Score: 65.5 bits (158), Expect = 4.120e-8
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:  367 FSAGFGADTISDFTAGFDSIDLQALDLADFNALLAATADVSGNAVITLSGNTITLTGVTKSQLLQSDFVGVNP----------VGTSGNDVI 612
            F+ G  +DT+ DFTAG D IDL A ++ DF+ LL   AD  G  VI+L G TITL G+T + L  +DF+              VGT+G+D I
Sbjct:  402 FAPGAESDTVLDFTAGIDVIDLAAFEITDFDTLLEMAADTRGGTVISLDGATITLKGMTVADLRPADFLLAENQGAVSESGPIVGTAGDDTI 493
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BLAST of mRNA_L-digitata_M_contig100822.3.1 vs. uniprot
Match: A0A4Q4CKC0_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A4Q4CKC0_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 2.020e-7
Identity = 35/67 (52.24%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:  376 GFGADTISDFTAGFDSIDLQALDLADFNALLAATADVSGNAVITLS-GNTITLTGVTKSQLLQSDFV 573
            G GADTI DFT G D +DL AL  A F A+LAAT D  G AVI    G+ ++L G+ K+ LL  DF+
Sbjct:  109 GAGADTIGDFTPGLDRLDLAALGFAGFAAVLAATTDHGGTAVIDCGQGDEVSLQGIAKAALLAGDFL 175
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BLAST of mRNA_L-digitata_M_contig100822.3.1 vs. uniprot
Match: A0A0Q7YHS3_9SPHN (Peptidase_S8 domain-containing protein n=3 Tax=unclassified Sphingopyxis TaxID=2614943 RepID=A0A0Q7YHS3_9SPHN)

HSP 1 Score: 61.6 bits (148), Expect = 7.640e-7
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:  367 FSAGFGADTISDFTAGFDSIDLQALDLADFNALLAATADVSGNAVITLSG-NTITLTGVTKSQLLQSDFVGVNPV--GTSGNDVING 618
            F A  G D I+DF +G D IDL      D+ A++ AT +V GNAVI L G + +TL GVTK+QL   DF+  +P   G +  D++ G
Sbjct:  964 FFADSGQDLITDFLSGTDRIDLSQRGFLDYQAVIDATQNVGGNAVIDLGGGDLVTLRGVTKAQLQSGDFIYASPAAQGAAAGDLLMG 1050
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BLAST of mRNA_L-digitata_M_contig100822.3.1 vs. uniprot
Match: UPI001FCCF4CD (hypothetical protein n=1 Tax=Methyloceanibacter caenitepidi TaxID=1384459 RepID=UPI001FCCF4CD)

HSP 1 Score: 56.6 bits (135), Expect = 3.250e-6
Identity = 38/71 (53.52%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:  367 FSAGFGADTISDFTAGFDSIDLQALDLADFNALLAATADVS-GNAVITL-SGNTITLTGVTKSQLLQSDFV 573
            F AGFG DTI DFT   D I+  +    D  A+LAATAD   GN V+ L + NT+TL GV K+QL Q DFV
Sbjct:   87 FDAGFGQDTIVDFTPDEDLIEFASGLFVDQAAVLAATADDGLGNTVVALDANNTVTLEGVLKAQLDQDDFV 157
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BLAST of mRNA_L-digitata_M_contig100822.3.1 vs. uniprot
Match: A0A4Q0MC38_9HYPH (Plug domain-containing protein n=1 Tax=Hansschlegelia zhihuaiae TaxID=405005 RepID=A0A4Q0MC38_9HYPH)

HSP 1 Score: 58.5 bits (140), Expect = 5.330e-6
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:  367 FSAGFGADTISDFTAGF---DSIDLQALDLADFNALLAATADVSGNAVITLSGNT-ITLTGVTKSQLLQSDFV 573
            FS  FG D I+DF AG    D I+  +   A+F A+LAAT DV GNAVIT+ G T +TL GVT++ L  +DF+
Sbjct:  359 FSGSFGNDQITDFQAGAAVGDVIEFSSSQFANFAAVLAATNDVGGNAVITVDGATSVTLIGVTEASLNANDFL 431
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BLAST of mRNA_L-digitata_M_contig100822.3.1 vs. uniprot
Match: UPI001AD994EB (hypothetical protein n=1 Tax=Thalassospira sp. A3_1 TaxID=2821088 RepID=UPI001AD994EB)

HSP 1 Score: 58.9 bits (141), Expect = 6.730e-6
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:  382 GADTISDFTAGFDSIDLQALDLADFNAL--LAATADVSGNAVITLSGNTITLTGVTKSQLLQSDFVGVNPVG-TSGNDVINGFD 624
            G D I+DF    D IDL A D+ ++ AL  L +T D +GNAVIT++GN++TLTG+  S L  S+F G+  +G T  +DVIN  D
Sbjct: 1912 GNDKIADFDVTSDQIDLGAFDIPNWEALKPLISTDD-NGNAVITINGNSLTLTGIPVSALDVSNFSGLETLGATENDDVINATD 1994
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BLAST of mRNA_L-digitata_M_contig100822.3.1 vs. uniprot
Match: A0A367UEE8_9PROT (Uncharacterized protein n=1 Tax=Thalassospira xianhensis MCCC 1A02616 TaxID=1177929 RepID=A0A367UEE8_9PROT)

HSP 1 Score: 58.2 bits (139), Expect = 1.200e-5
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:  382 GADTISDFTAGFDSIDLQALDLADFNAL--LAATADVSGNAVITLSGNTITLTGVTKSQLLQSDFVGVNPVG-TSGNDVIN 615
            G D I+DF    D IDL A D+ ++ AL  L +T D +GNAVIT++GN++TLTG+  S L  S+F G+  +G T  +DVIN
Sbjct: 1927 GNDKIADFDVTSDQIDLGAFDIPNWEALKPLISTDD-NGNAVITINGNSLTLTGIPVSALDVSNFSGLETLGATENDDVIN 2006
[Close]
BLAST of mRNA_L-digitata_M_contig100822.3.1 vs. uniprot
Match: UPI001F100CBF (hypothetical protein n=1 Tax=Roseomonas sp. HF4 TaxID=2562313 RepID=UPI001F100CBF)

HSP 1 Score: 57.0 bits (136), Expect = 2.400e-5
Identity = 34/69 (49.28%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:  367 FSAGFGADTISDFTAGFDSIDLQALDLADFNALLAATADVSGNAVITLS-GNTITLTGVTKSQLLQSDF 570
            F  G G D I DFT G D I LQ L  ADF A++AAT D  G A+I  S  + + LTGV K+ L   DF
Sbjct:  961 FGPGSGVDAIRDFTPGTDRILLQGLGFADFAAVMAATRDAGGGAIIDFSPSDAVQLTGVAKAALSAGDF 1029
[Close]
BLAST of mRNA_L-digitata_M_contig100822.3.1 vs. uniprot
Match: UPI001F39A476 (hypothetical protein n=1 Tax=Acuticoccus sp. M5D2P5 TaxID=2910977 RepID=UPI001F39A476)

HSP 1 Score: 55.5 bits (132), Expect = 3.630e-5
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  367 FSAGFGADTISDFTAGFDSIDLQALDLADFNAL-LAATADVSGNAVITLSGNTITLTGVTKSQLLQSDFV 573
            F   FG D I  F +G D IDL+A  + DF+AL LAA  D  G+AV+T+ G+TITLTGV+ + L   DF+
Sbjct:  227 FGETFGNDRIVKFESGLDLIDLRAHGIDDFDALDLAANGD--GDAVVTIDGDTITLTGVSVTALTSDDFL 294
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100822.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6N7F7E7_9PROT1.720e-1556.04ZnMc domain-containing protein n=1 Tax=Alphaproteo... [more]
A0A6N7F4Q4_9PROT4.120e-843.48Type I secretion C-terminal target domain-containi... [more]
A0A4Q4CKC0_9PROT2.020e-752.24Uncharacterized protein (Fragment) n=1 Tax=Acetoba... [more]
A0A0Q7YHS3_9SPHN7.640e-743.68Peptidase_S8 domain-containing protein n=3 Tax=unc... [more]
UPI001FCCF4CD3.250e-653.52hypothetical protein n=1 Tax=Methyloceanibacter ca... [more]
A0A4Q0MC38_9HYPH5.330e-650.68Plug domain-containing protein n=1 Tax=Hansschlege... [more]
UPI001AD994EB6.730e-647.62hypothetical protein n=1 Tax=Thalassospira sp. A3_... [more]
A0A367UEE8_9PROT1.200e-548.15Uncharacterized protein n=1 Tax=Thalassospira xian... [more]
UPI001F100CBF2.400e-549.28hypothetical protein n=1 Tax=Roseomonas sp. HF4 Ta... [more]
UPI001F39A4763.630e-550.00hypothetical protein n=1 Tax=Acuticoccus sp. M5D2P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100822contigL-digitata_M_contig100822:1..924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1177928.TH2_00330
PFAMsHemolysinCabind
Model size924
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.06e-05
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,2JRKY@204441|Rhodospirillales
DescriptionCOG2931 RTX toxins and related Ca2 -binding proteins
Cds size915
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.4596298-CDS-L-digitata_M_contig100822:0..9151682406611.4596298-CDS-L-digitata_M_contig100822:0..915Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100822 1..915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.4711213-UTR-L-digitata_M_contig100822:915..9241682406611.4711213-UTR-L-digitata_M_contig100822:915..924Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100822 916..924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100822.3.1prot_L-digitata_M_contig100822.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100822 1..915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100822.3.1

>prot_L-digitata_M_contig100822.3.1 ID=prot_L-digitata_M_contig100822.3.1|Name=mRNA_L-digitata_M_contig100822.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=305bp
MADVSGNAVLTLGSDTITLTGVASSDLHVDDYFGVMAGPTSGDDTLLGTS
GNDTIDGLAGNDSIGGNGGNDFLRGGAGDDAVSGNAGDDTLYGDAGSDIL
NGGAGDDTLIGGAGRDTYTFSAGFGADTISDFTAGFDSIDLQALDLADFN
ALLAATADVSGNAVITLSGNTITLTGVTKSQLLQSDFVGVNPVGTSGNDV
INGFDTDDTINGLAGNDIINGGAGDDTLNGGDGDDRLVGGAGADVMTGGN
GDDTYLVDNVGDTVTEGSIASTDTVISSISFTLGDHVENLELSLSSNIDG
TGNNL
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mRNA from alignment at L-digitata_M_contig100822:1..924-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100822.3.1 ID=mRNA_L-digitata_M_contig100822.3.1|Name=mRNA_L-digitata_M_contig100822.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=924bp|location=Sequence derived from alignment at L-digitata_M_contig100822:1..924- (Laminaria digitata LdigPH10_18mv male)
AACATCTCGATGGCCGACGTCAGCGGAAATGCGGTTCTGACTCTCGGTAG
CGATACGATAACGTTGACCGGCGTTGCCTCGTCCGATCTTCACGTTGACG
ATTACTTCGGCGTGATGGCGGGCCCTACATCGGGCGATGATACGCTTCTC
GGTACGTCCGGAAACGACACGATCGACGGGCTGGCCGGAAACGATTCAAT
CGGCGGCAACGGTGGCAACGATTTCCTGCGCGGTGGGGCAGGCGACGATG
CTGTGTCCGGGAATGCGGGTGACGATACGCTGTATGGCGATGCCGGGTCG
GACATTCTGAACGGTGGGGCCGGCGACGATACTCTGATTGGCGGAGCCGG
ACGCGATACGTATACATTTTCTGCCGGTTTTGGTGCCGATACTATCAGTG
ATTTTACCGCCGGCTTCGACAGCATCGACCTTCAGGCCCTGGACCTAGCG
GACTTTAATGCCCTGCTCGCCGCTACTGCCGATGTCAGCGGAAATGCGGT
TATTACTCTTAGTGGCAATACGATCACCCTGACAGGCGTTACGAAGTCCC
AGCTTTTGCAGAGCGATTTTGTCGGCGTGAACCCGGTCGGCACGTCCGGC
AATGACGTCATCAACGGGTTCGACACTGACGACACGATCAACGGGCTTGC
CGGCAACGACATTATCAATGGCGGCGCAGGCGACGATACTCTGAACGGCG
GCGATGGCGACGATCGCCTGGTCGGCGGCGCCGGCGCCGATGTCATGACG
GGCGGCAACGGTGACGATACCTATCTGGTCGATAACGTCGGAGACACGGT
TACCGAAGGCAGCATCGCCAGCACCGATACGGTGATTTCATCAATCTCGT
TCACGCTTGGCGATCACGTCGAAAATCTTGAGCTTAGTCTCTCGTCCAAT
ATCGACGGTACTGGCAACAATCTC
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Coding sequence (CDS) from alignment at L-digitata_M_contig100822:1..924-

>mRNA_L-digitata_M_contig100822.3.1 ID=mRNA_L-digitata_M_contig100822.3.1|Name=mRNA_L-digitata_M_contig100822.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=915bp|location=Sequence derived from alignment at L-digitata_M_contig100822:1..924- (Laminaria digitata LdigPH10_18mv male)
ATGGCCGACGTCAGCGGAAATGCGGTTCTGACTCTCGGTAGCGATACGAT
AACGTTGACCGGCGTTGCCTCGTCCGATCTTCACGTTGACGATTACTTCG
GCGTGATGGCGGGCCCTACATCGGGCGATGATACGCTTCTCGGTACGTCC
GGAAACGACACGATCGACGGGCTGGCCGGAAACGATTCAATCGGCGGCAA
CGGTGGCAACGATTTCCTGCGCGGTGGGGCAGGCGACGATGCTGTGTCCG
GGAATGCGGGTGACGATACGCTGTATGGCGATGCCGGGTCGGACATTCTG
AACGGTGGGGCCGGCGACGATACTCTGATTGGCGGAGCCGGACGCGATAC
GTATACATTTTCTGCCGGTTTTGGTGCCGATACTATCAGTGATTTTACCG
CCGGCTTCGACAGCATCGACCTTCAGGCCCTGGACCTAGCGGACTTTAAT
GCCCTGCTCGCCGCTACTGCCGATGTCAGCGGAAATGCGGTTATTACTCT
TAGTGGCAATACGATCACCCTGACAGGCGTTACGAAGTCCCAGCTTTTGC
AGAGCGATTTTGTCGGCGTGAACCCGGTCGGCACGTCCGGCAATGACGTC
ATCAACGGGTTCGACACTGACGACACGATCAACGGGCTTGCCGGCAACGA
CATTATCAATGGCGGCGCAGGCGACGATACTCTGAACGGCGGCGATGGCG
ACGATCGCCTGGTCGGCGGCGCCGGCGCCGATGTCATGACGGGCGGCAAC
GGTGACGATACCTATCTGGTCGATAACGTCGGAGACACGGTTACCGAAGG
CAGCATCGCCAGCACCGATACGGTGATTTCATCAATCTCGTTCACGCTTG
GCGATCACGTCGAAAATCTTGAGCTTAGTCTCTCGTCCAATATCGACGGT
ACTGGCAACAATCTC
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