mRNA_L-digitata_M_contig10080.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10080.1.1
Unique NamemRNA_L-digitata_M_contig10080.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig10080.1.1 vs. uniprot
Match: D7FKI1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI1_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 9.660e-11
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 2 
Query:  257 LQQP-QQAQPTPTSTWFKLNPFHSTQVPPALMVRGGGGAATSNTAKTQRIYDRIAVLLNKRFFLLGAVAMVSAARLAPAPGATGGLLRPELTVNKA 541
            +Q+P QQ+ P   + W +L      +  PAL+ RGG  A  S T   +  YD++   LNKRFFLLGA AMV+AAR+ P+PG TGGLL   L+V+KA
Sbjct:    3 VQRPKQQSHPGQHNNWLRLG-SGCNKYNPALVTRGG--ADVSKTQPERSPYDQLKAFLNKRFFLLGAAAMVAAARVVPSPGTTGGLL--SLSVSKA 93
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10080.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKI1_ECTSI9.660e-1147.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10080contigL-digitata_M_contig10080:752..1292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FKI1
PFAMsSBF_like
Model size543
Max annot lvl2759|Eukaryota
KEGG koko:K14347
KEGG TC2.A.93.1
Hectar predicted targeting categorychloroplast
Exons1
Evalue1.22e-11
EggNOG OGsCOG0385@1|root,KOG4821@2759|Eukaryota
Descriptionsymporter activity
Cds size510
COG categoryJ
BRITEko00000,ko02000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.1066375-CDS-L-digitata_M_contig10080:751..12611682406611.1066375-CDS-L-digitata_M_contig10080:751..1261Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10080 752..1261 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.1180584-UTR-L-digitata_M_contig10080:1261..12921682406611.1180584-UTR-L-digitata_M_contig10080:1261..1292Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10080 1262..1292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10080.1.1prot_L-digitata_M_contig10080.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10080 752..1261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10080.1.1

>prot_L-digitata_M_contig10080.1.1 ID=prot_L-digitata_M_contig10080.1.1|Name=mRNA_L-digitata_M_contig10080.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=170bp
MRVVLVFSGIAVATAFPAKIALSHRSTCHATASSSAFTSTAADDVPVSLK
AGQGLSAHNNVHHRRQHGGSTALGLLQQPQQAQPTPTSTWFKLNPFHSTQ
VPPALMVRGGGGAATSNTAKTQRIYDRIAVLLNKRFFLLGAVAMVSAARL
APAPGATGGLLRPELTVNKA
back to top

mRNA from alignment at L-digitata_M_contig10080:752..1292-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10080.1.1 ID=mRNA_L-digitata_M_contig10080.1.1|Name=mRNA_L-digitata_M_contig10080.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=541bp|location=Sequence derived from alignment at L-digitata_M_contig10080:752..1292- (Laminaria digitata LdigPH10_18mv male)
GCGGCGTGCACCTCTCTAGCGTGCCTTCCCGATGCGTGTGGTGCTAGTGT
TCTCGGGTATCGCCGTGGCCACGGCGTTCCCTGCCAAAATAGCACTGTCG
CACCGGTCAACGTGTCATGCTACGGCCTCCTCATCGGCCTTCACCTCGAC
AGCAGCCGATGACGTACCGGTCTCACTGAAGGCGGGCCAAGGTTTATCAG
CGCACAACAATGTCCACCACAGGAGACAACACGGCGGCAGTACTGCTCTG
GGATTGCTCCAGCAGCCGCAGCAGGCCCAACCCACACCGACCTCTACATG
GTTCAAGCTGAACCCCTTCCACTCGACCCAAGTTCCACCAGCTCTCATGG
TCAGAGGAGGAGGAGGTGCAGCGACATCCAACACCGCCAAAACGCAGAGG
ATCTACGACCGGATAGCGGTGTTGCTGAACAAACGTTTTTTTCTGTTGGG
TGCTGTCGCCATGGTGTCCGCCGCAAGACTCGCCCCTGCTCCCGGGGCCA
CAGGCGGGTTGCTTCGGCCTGAACTCACAGTGAACAAGGCT
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig10080:752..1292-

>mRNA_L-digitata_M_contig10080.1.1 ID=mRNA_L-digitata_M_contig10080.1.1|Name=mRNA_L-digitata_M_contig10080.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=510bp|location=Sequence derived from alignment at L-digitata_M_contig10080:752..1292- (Laminaria digitata LdigPH10_18mv male)
ATGCGTGTGGTGCTAGTGTTCTCGGGTATCGCCGTGGCCACGGCGTTCCC
TGCCAAAATAGCACTGTCGCACCGGTCAACGTGTCATGCTACGGCCTCCT
CATCGGCCTTCACCTCGACAGCAGCCGATGACGTACCGGTCTCACTGAAG
GCGGGCCAAGGTTTATCAGCGCACAACAATGTCCACCACAGGAGACAACA
CGGCGGCAGTACTGCTCTGGGATTGCTCCAGCAGCCGCAGCAGGCCCAAC
CCACACCGACCTCTACATGGTTCAAGCTGAACCCCTTCCACTCGACCCAA
GTTCCACCAGCTCTCATGGTCAGAGGAGGAGGAGGTGCAGCGACATCCAA
CACCGCCAAAACGCAGAGGATCTACGACCGGATAGCGGTGTTGCTGAACA
AACGTTTTTTTCTGTTGGGTGCTGTCGCCATGGTGTCCGCCGCAAGACTC
GCCCCTGCTCCCGGGGCCACAGGCGGGTTGCTTCGGCCTGAACTCACAGT
GAACAAGGCT
back to top