mRNA_L-digitata_M_contig100717.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100717.1.1
Unique NamemRNA_L-digitata_M_contig100717.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100717.1.1 vs. uniprot
Match: A0A2E8DAA1_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8DAA1_9PLAN)

HSP 1 Score: 119 bits (299), Expect = 3.970e-28
Identity = 83/221 (37.56%), Postives = 119/221 (53.85%), Query Frame = 1 
Query:    1 EFRLIVTGGSGAAGWRATQPSRFMSSILEQNFSRSASCSDTRQLRVINLAMGGSQSYQNYIALNRWGQKLAPDMILSYSGFNDMNVPWFSGG--DGFRDFEVLIAFNRVARYSESPDWLKFLGRWYPGLVRETGLGPAIRSMEIKSQA-ARAKADYLSRFPTVP-------KTADRVVQELS-------------IPQF-THAVQSMKRDFNGIPIAVAFQ 591
            E+R+I+ GGSGA GW A    + +   LE+  +R    S  R ++VIN+AMG S +YQNYIALNRWG +L PD+ILSYSG ND  VP       D    F  L A    +R SE    L+++ R +P ++ +T +G +++ +   S   ARA   Y       P       + A   V+E+S             + +F  HA++S+KRDF GIPI +A+Q
Sbjct:  200 EYRIILIGGSGAQGWGAQSNDKMLYRQLERRLNRITKESGPR-VQVINMAMGASITYQNYIALNRWGHRLEPDLILSYSGRNDFVVPLHHEHLPDTHYFFTGLNALVYASRGSEYGAKLQWMARLFPNIMNKTNVGLSLKILAEHSHFYARAHRGYRGSRGLPPAEIVWSGRGAGYSVKEVSSKGGELRRMLDEEVSEFYAHALKSIKRDFEGIPIMLAWQ 419
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100717.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E8DAA1_9PLAN3.970e-2837.56Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100717contigL-digitata_M_contig100717:2..592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size591
Hectar predicted targeting categoryother localisation
Exons1
Cds size591
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.7962246-CDS-L-digitata_M_contig100717:1..5921682406609.7962246-CDS-L-digitata_M_contig100717:1..592Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100717 2..592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100717.1.1prot_L-digitata_M_contig100717.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100717 2..592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100717.1.1

>prot_L-digitata_M_contig100717.1.1 ID=prot_L-digitata_M_contig100717.1.1|Name=mRNA_L-digitata_M_contig100717.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=197bp
EFRLIVTGGSGAAGWRATQPSRFMSSILEQNFSRSASCSDTRQLRVINLA
MGGSQSYQNYIALNRWGQKLAPDMILSYSGFNDMNVPWFSGGDGFRDFEV
LIAFNRVARYSESPDWLKFLGRWYPGLVRETGLGPAIRSMEIKSQAARAK
ADYLSRFPTVPKTADRVVQELSIPQFTHAVQSMKRDFNGIPIAVAFQ
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mRNA from alignment at L-digitata_M_contig100717:2..592+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100717.1.1 ID=mRNA_L-digitata_M_contig100717.1.1|Name=mRNA_L-digitata_M_contig100717.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=591bp|location=Sequence derived from alignment at L-digitata_M_contig100717:2..592+ (Laminaria digitata LdigPH10_18mv male)
GAATTCCGACTTATTGTCACGGGCGGCTCCGGCGCAGCGGGCTGGAGGGC
AACCCAACCATCGCGCTTTATGTCCAGTATTTTGGAGCAGAACTTTTCCC
GAAGTGCCAGTTGTTCAGACACTCGACAGCTGCGCGTTATCAACTTGGCA
ATGGGCGGATCCCAGTCATACCAAAACTACATTGCCCTGAACCGGTGGGG
TCAAAAATTGGCACCAGACATGATTCTCTCGTATTCGGGATTCAATGACA
TGAACGTACCTTGGTTCAGCGGCGGTGATGGTTTCCGGGACTTCGAAGTC
CTAATCGCCTTCAATCGTGTAGCGCGATATAGCGAAAGCCCGGACTGGCT
GAAGTTTCTCGGCCGCTGGTACCCAGGTCTTGTTCGTGAAACCGGTCTCG
GTCCAGCCATTCGATCCATGGAGATCAAATCGCAGGCGGCTCGAGCCAAG
GCAGATTACCTCAGTCGGTTCCCTACGGTGCCGAAAACCGCCGATCGAGT
TGTACAAGAACTTTCAATTCCGCAATTCACACACGCCGTTCAATCAATGA
AGCGCGATTTCAATGGAATCCCGATAGCCGTGGCATTTCAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100717:2..592+

>mRNA_L-digitata_M_contig100717.1.1 ID=mRNA_L-digitata_M_contig100717.1.1|Name=mRNA_L-digitata_M_contig100717.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=591bp|location=Sequence derived from alignment at L-digitata_M_contig100717:2..592+ (Laminaria digitata LdigPH10_18mv male)
GAATTCCGACTTATTGTCACGGGCGGCTCCGGCGCAGCGGGCTGGAGGGC
AACCCAACCATCGCGCTTTATGTCCAGTATTTTGGAGCAGAACTTTTCCC
GAAGTGCCAGTTGTTCAGACACTCGACAGCTGCGCGTTATCAACTTGGCA
ATGGGCGGATCCCAGTCATACCAAAACTACATTGCCCTGAACCGGTGGGG
TCAAAAATTGGCACCAGACATGATTCTCTCGTATTCGGGATTCAATGACA
TGAACGTACCTTGGTTCAGCGGCGGTGATGGTTTCCGGGACTTCGAAGTC
CTAATCGCCTTCAATCGTGTAGCGCGATATAGCGAAAGCCCGGACTGGCT
GAAGTTTCTCGGCCGCTGGTACCCAGGTCTTGTTCGTGAAACCGGTCTCG
GTCCAGCCATTCGATCCATGGAGATCAAATCGCAGGCGGCTCGAGCCAAG
GCAGATTACCTCAGTCGGTTCCCTACGGTGCCGAAAACCGCCGATCGAGT
TGTACAAGAACTTTCAATTCCGCAATTCACACACGCCGTTCAATCAATGA
AGCGCGATTTCAATGGAATCCCGATAGCCGTGGCATTTCAA
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