mRNA_L-digitata_M_contig100713.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100713.1.1
Unique NamemRNA_L-digitata_M_contig100713.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100713.1.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.860e-14
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   10 EMYHVTTREFNTEMQKVIRNAVIPIVHFNVDLWTSRVSGLKFIG 141
            +MYHVTTREFN  MQK +RNA IPI++ N DLWTS VSGLK+IG
Sbjct:  122 KMYHVTTREFNASMQKTLRNATIPILYVNCDLWTSHVSGLKYIG 165
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BLAST of mRNA_L-digitata_M_contig100713.1.1 vs. uniprot
Match: D7G3L2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L2_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.690e-13
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   10 EMYHVTTREFNTEMQKVIRNAVIPIVHFNVDLWTSRVSGLKFIG 141
            EMYH TT+EFN  MQK +RNA IPI++ N DLWTS VSGLK+IG
Sbjct:  122 EMYHATTQEFNASMQKTLRNATIPILYVNCDLWTSHVSGLKYIG 165
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BLAST of mRNA_L-digitata_M_contig100713.1.1 vs. uniprot
Match: A0A6H5L6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z1_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.430e-11
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 MMIEMYHVTTREFNTEMQKVIRNAVIPIVHFNVDLWTSRVSGLKFIG 141
            M++EMY  TTR FN+E+ K +R A+IPI++ N DLWTSRVSG K+IG
Sbjct:  259 MIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYIG 305
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BLAST of mRNA_L-digitata_M_contig100713.1.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.430e-11
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 MMIEMYHVTTREFNTEMQKVIRNAVIPIVHFNVDLWTSRVSGLKFIG 141
            M++EMY  TTR FN+E+ K +R A+IPI++ N DLWTSRVSG K+IG
Sbjct:  180 MIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYIG 226
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BLAST of mRNA_L-digitata_M_contig100713.1.1 vs. uniprot
Match: A0A6H5JP19_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP19_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.950e-6
Identity = 21/46 (45.65%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 MMIEMYHVTTREFNTEMQKVIRNAVIPIVHFNVDLWTSRVSGLKFI 138
            M++EMY+ T +  N ++Q+ +  A+IPI++ N D+WT++VSG KFI
Sbjct:    1 MIVEMYNATLKVVNKDLQRQLALAIIPILYANCDIWTTKVSGEKFI 46
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BLAST of mRNA_L-digitata_M_contig100713.1.1 vs. uniprot
Match: A0A6H5JXM2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM2_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 7.200e-6
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    1 MMIEMYHVTTREFNTEMQKVIRNAVIPIVHFNVDLWTSRVSGLKFI 138
            +++EM+  T       M + I+ A +PIVH+ VDLWT + SG+KFI
Sbjct:   22 LLVEMFVATKTAVMGNMSEEIKKAPLPIVHYGVDLWTCKTSGMKFI 67
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BLAST of mRNA_L-digitata_M_contig100713.1.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 3.570e-5
Identity = 20/46 (43.48%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 MMIEMYHVTTREFNTEMQKVIRNAVIPIVHFNVDLWTSRVSGLKFI 138
            +++EM+  T +     M + I+ A +PIVH+ VDLWT + SG+KFI
Sbjct:   42 LLVEMFVATKKAVMGNMLEEIKKAPLPIVHYGVDLWTCKTSGMKFI 87
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100713.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G4Z8_ECTSI4.860e-1472.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3L2_ECTSI1.690e-1370.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6Z1_9PHAE3.430e-1161.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX27_9PHAE3.430e-1161.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP19_9PHAE1.950e-645.65Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXM2_9PHAE7.200e-643.48Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVT2_9PHAE3.570e-543.48Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100713contigL-digitata_M_contig100713:759..902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4Z8
PFAMsDimer_Tnp_hAT
Model size144
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue7.98e-15
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.7367449-CDS-L-digitata_M_contig100713:758..9021682406609.7367449-CDS-L-digitata_M_contig100713:758..902Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100713 759..902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100713.1.1prot_L-digitata_M_contig100713.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100713 759..902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100713.1.1

>prot_L-digitata_M_contig100713.1.1 ID=prot_L-digitata_M_contig100713.1.1|Name=mRNA_L-digitata_M_contig100713.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=48bp
MMIEMYHVTTREFNTEMQKVIRNAVIPIVHFNVDLWTSRVSGLKFIG*
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mRNA from alignment at L-digitata_M_contig100713:759..902+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100713.1.1 ID=mRNA_L-digitata_M_contig100713.1.1|Name=mRNA_L-digitata_M_contig100713.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=144bp|location=Sequence derived from alignment at L-digitata_M_contig100713:759..902+ (Laminaria digitata LdigPH10_18mv male)
ATGATGATAGAGATGTACCATGTCACCACGCGGGAGTTCAACACGGAAAT
GCAAAAGGTCATTCGCAACGCCGTCATCCCGATCGTGCACTTCAACGTCG
ACTTGTGGACCAGCCGCGTCTCCGGGCTCAAGTTCATCGGTTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100713:759..902+

>mRNA_L-digitata_M_contig100713.1.1 ID=mRNA_L-digitata_M_contig100713.1.1|Name=mRNA_L-digitata_M_contig100713.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=144bp|location=Sequence derived from alignment at L-digitata_M_contig100713:759..902+ (Laminaria digitata LdigPH10_18mv male)
ATGATGATAGAGATGTACCATGTCACCACGCGGGAGTTCAACACGGAAAT
GCAAAAGGTCATTCGCAACGCCGTCATCCCGATCGTGCACTTCAACGTCG
ACTTGTGGACCAGCCGCGTCTCCGGGCTCAAGTTCATCGGTTAG
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