mRNA_L-digitata_M_contig100672.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100672.2.1
Unique NamemRNA_L-digitata_M_contig100672.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100672.2.1 vs. uniprot
Match: A0A6M4H5D7_9PROT (Uncharacterized protein n=1 Tax=Usitatibacter palustris TaxID=2732487 RepID=A0A6M4H5D7_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 3.720e-6
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 1 
Query:   70 ANAFCVYNAKNSDRTVIIAQLQKGGDDFRGSSPNLSAFSHGGSTWFVATLAPGGKSCCNWKNRDCN 267
            A+AFCVYN   SD++V  +Q    G  F+G               F  T+ PGGK+CCN+KNRDCN
Sbjct:   18 ASAFCVYNY--SDKSVKFSQDSASGIPFKG---------------FSKTVDPGGKACCNYKNRDCN 66
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100672.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6M4H5D7_9PROT3.720e-643.94Uncharacterized protein n=1 Tax=Usitatibacter palu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100672contigL-digitata_M_contig100672:569..889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size321
Hectar predicted targeting categorysignal peptide
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.1861553-CDS-L-digitata_M_contig100672:568..8891682406609.1861553-CDS-L-digitata_M_contig100672:568..889Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100672 569..889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100672.2.1prot_L-digitata_M_contig100672.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100672 569..889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100672.2.1

>prot_L-digitata_M_contig100672.2.1 ID=prot_L-digitata_M_contig100672.2.1|Name=mRNA_L-digitata_M_contig100672.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=107bp
MTRISKFVLISAILLMTLVVPRLANAFCVYNAKNSDRTVIIAQLQKGGDD
FRGSSPNLSAFSHGGSTWFVATLAPGGKSCCNWKNRDCNNGARGTSLIFS
AIDQAKN
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mRNA from alignment at L-digitata_M_contig100672:569..889+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100672.2.1 ID=mRNA_L-digitata_M_contig100672.2.1|Name=mRNA_L-digitata_M_contig100672.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=321bp|location=Sequence derived from alignment at L-digitata_M_contig100672:569..889+ (Laminaria digitata LdigPH10_18mv male)
ATGACGAGAATTTCGAAGTTTGTGCTTATATCAGCGATATTGCTTATGAC
GCTGGTTGTACCGCGTCTGGCAAATGCTTTTTGCGTCTACAACGCCAAAA
ATTCCGACCGGACAGTGATTATCGCCCAGCTTCAGAAAGGCGGGGACGAT
TTCAGGGGAAGCTCTCCAAATCTGAGCGCGTTCTCGCATGGCGGCAGCAC
GTGGTTCGTGGCCACGCTCGCGCCGGGCGGCAAGTCCTGCTGCAACTGGA
AGAACAGAGATTGCAACAATGGCGCACGTGGCACCTCGTTGATATTCAGC
GCTATCGACCAGGCTAAGAAC
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Coding sequence (CDS) from alignment at L-digitata_M_contig100672:569..889+

>mRNA_L-digitata_M_contig100672.2.1 ID=mRNA_L-digitata_M_contig100672.2.1|Name=mRNA_L-digitata_M_contig100672.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=321bp|location=Sequence derived from alignment at L-digitata_M_contig100672:569..889+ (Laminaria digitata LdigPH10_18mv male)
ATGACGAGAATTTCGAAGTTTGTGCTTATATCAGCGATATTGCTTATGAC
GCTGGTTGTACCGCGTCTGGCAAATGCTTTTTGCGTCTACAACGCCAAAA
ATTCCGACCGGACAGTGATTATCGCCCAGCTTCAGAAAGGCGGGGACGAT
TTCAGGGGAAGCTCTCCAAATCTGAGCGCGTTCTCGCATGGCGGCAGCAC
GTGGTTCGTGGCCACGCTCGCGCCGGGCGGCAAGTCCTGCTGCAACTGGA
AGAACAGAGATTGCAACAATGGCGCACGTGGCACCTCGTTGATATTCAGC
GCTATCGACCAGGCTAAGAAC
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