mRNA_L-digitata_M_contig100637.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100637.2.1 vs. uniprot
Match: A0A3C1KQ26_9GAMM (Anti-sigma factor n=9 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KQ26_9GAMM) HSP 1 Score: 481 bits (1238), Expect = 3.450e-172 Identity = 219/226 (96.90%), Postives = 222/226 (98.23%), Query Frame = 1
Query: 1 MTDNRVALNGDLSLRTVVDPQTMDWTPSPGGHVLRKRLHRVGQSESGQVTSLVRYEPGATFPAHDHPLGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSHEGCLLFVKLRQYPGPDREHVAIATHNKPWQPSIRKNTSWKKLYAQEPYTDFMRLESWDEPSAIGQINFPQGAEILVLRGSFADEHGHYSTHCWLRIPAGGTVNPISDDYCELYIKEGGFTY 678
M DNRVALNGDLSLRTVVDPQTMDWTPSPGGHVLRKRLHRVGQSESGQVTSLVRYEPGA+FPAHDHP GEEILVLEGVFSDEHGDWPAGSYLLNPEGF+HAPFS EGCLLFVKLRQYPGPDREHVAIATHNKPWQPSIRKNTSWKKLYAQEPYTDFMRLESWDEPSAIGQINFPQGAE+LVLRGSFADEHGHY THCWLRIPAGGTVNPISDDYCELYIKEGGFTY
Sbjct: 1 MADNRVALNGDLSLRTVVDPQTMDWTPSPGGHVLRKRLHRVGQSESGQVTSLVRYEPGASFPAHDHPQGEEILVLEGVFSDEHGDWPAGSYLLNPEGFQHAPFSREGCLLFVKLRQYPGPDREHVAIATHNKPWQPSIRKNTSWKKLYAQEPYTDFMRLESWDEPSAIGQINFPQGAEVLVLRGSFADEHGHYGTHCWLRIPAGGTVNPISDDYCELYIKEGGFTY 226
BLAST of mRNA_L-digitata_M_contig100637.2.1 vs. uniprot
Match: A0A2N5Y5A5_9GAMM (Anti-sigma factor n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y5A5_9GAMM) HSP 1 Score: 424 bits (1091), Expect = 8.960e-150 Identity = 192/226 (84.96%), Postives = 206/226 (91.15%), Query Frame = 1
Query: 1 MTDNRVALNGDLSLRTVVDPQTMDWTPSPGGHVLRKRLHRVGQSESGQVTSLVRYEPGATFPAHDHPLGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSHEGCLLFVKLRQYPGPDREHVAIATHNKPWQPSIRKNTSWKKLYAQEPYTDFMRLESWDEPSAIGQINFPQGAEILVLRGSFADEHGHYSTHCWLRIPAGGTVNPISDDYCELYIKEGGFTY 678
MTD+ + LNGDLS R VVD Q+MDWTPSP G VLRKRLH VGQ+ESGQVTSLVRYEPGA+FPAHDHP GEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFS EGCLLFVKLRQYPG DREHVAI T +PWQPS+RKNTSWKKLYAQEPYTDFMRLESWD P+AIGQINFPQGAEILVL+GSFAD+ G Y THCWLRIPAGG ++P S++YCELYIKEGGFTY
Sbjct: 1 MTDSTIVLNGDLSRRVVVDTQSMDWTPSPAGQVLRKRLHLVGQAESGQVTSLVRYEPGASFPAHDHPQGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSREGCLLFVKLRQYPGADREHVAIDTTARPWQPSVRKNTSWKKLYAQEPYTDFMRLESWDTPAAIGQINFPQGAEILVLKGSFADDEGSYRTHCWLRIPAGGAIHPTSNEYCELYIKEGGFTY 226
BLAST of mRNA_L-digitata_M_contig100637.2.1 vs. uniprot
Match: A0A2D8IS44_9GAMM (Anti-sigma factor n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D8IS44_9GAMM) HSP 1 Score: 391 bits (1005), Expect = 1.150e-136 Identity = 172/226 (76.11%), Postives = 195/226 (86.28%), Query Frame = 1
Query: 1 MTDNRVALNGDLSLRTVVDPQTMDWTPSPGGHVLRKRLHRVGQSESGQVTSLVRYEPGATFPAHDHPLGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSHEGCLLFVKLRQYPGPDREHVAIATHNKPWQPSIRKNTSWKKLYAQEPYTDFMRLESWDEPSAIGQINFPQGAEILVLRGSFADEHGHYSTHCWLRIPAGGTVNPISDDYCELYIKEGGFTY 678
M+D+ LNGDLS R V+ P+ + WTPSPGGHVLRKR HRVG ESGQVTSLVRYEPGA FPAHDHP GEEILVLEGVFSDEHGDWPAGSYLLNPEGF H PFS +GCLLFVKLRQ+PG DREHVA+ T +PWQPS++K+ SWKKLYAQEPYTDFMRLE+WD P+ +G+INFPQGAE+LVL+GSF+D G Y H WLRIPAGG++ P S+DYCELYIKEGGF+Y
Sbjct: 1 MSDSNTPLNGDLSQRIVMRPEHLSWTPSPGGHVLRKRFHRVGAQESGQVTSLVRYEPGANFPAHDHPQGEEILVLEGVFSDEHGDWPAGSYLLNPEGFTHQPFSRDGCLLFVKLRQFPGADREHVAVDTRARPWQPSVKKSVSWKKLYAQEPYTDFMRLEAWDTPAELGRINFPQGAELLVLKGSFSDARGSYGLHTWLRIPAGGSLEPTSNDYCELYIKEGGFSY 226
BLAST of mRNA_L-digitata_M_contig100637.2.1 vs. uniprot
Match: A0A5C8ZZG8_9GAMM (Anti-sigma factor n=1 Tax=Parahaliea maris TaxID=2716870 RepID=A0A5C8ZZG8_9GAMM) HSP 1 Score: 378 bits (971), Expect = 2.660e-131 Identity = 167/226 (73.89%), Postives = 193/226 (85.40%), Query Frame = 1
Query: 1 MTDNRVALNGDLSLRTVVDPQTMDWTPSPGGHVLRKRLHRVGQSESGQVTSLVRYEPGATFPAHDHPLGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSHEGCLLFVKLRQYPGPDREHVAIATHNKPWQPSIRKNTSWKKLYAQEPYTDFMRLESWDEPSAIGQINFPQGAEILVLRGSFADEHGHYSTHCWLRIPAGGTVNPISDDYCELYIKEGGFTY 678
MTD A+NGDLS R VVD Q+M W+ SPG V R+R+HRVG +ESGQVTS+VRYEPGA FP+HDHP GEEILVLEGVFSDE GDWPAGSYLLNPEGF+HAP+S EGC L VKLRQYPG DR+ VAI T ++PWQPS+R+N+ WKKLYAQEPYTDFMRLE+WD P +GQ+NFP+GAE+ VL+GSFAD G Y THCWLRIPAGG++ P S++YCELYIKEGGFTY
Sbjct: 1 MTDENQAINGDLSKRVVVDTQSMPWSASPGAEVWRRRVHRVGPAESGQVTSVVRYEPGARFPSHDHPQGEEILVLEGVFSDEQGDWPAGSYLLNPEGFRHAPWSKEGCTLLVKLRQYPGADRDKVAIQTLDRPWQPSVRRNSQWKKLYAQEPYTDFMRLEAWDCPGDLGQVNFPRGAELFVLKGSFADAQGTYGTHCWLRIPAGGSLTPTSNEYCELYIKEGGFTY 226
BLAST of mRNA_L-digitata_M_contig100637.2.1 vs. uniprot
Match: UPI0019D36214 (cupin domain-containing protein n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D36214) HSP 1 Score: 378 bits (971), Expect = 2.660e-131 Identity = 166/226 (73.45%), Postives = 190/226 (84.07%), Query Frame = 1
Query: 1 MTDNRVALNGDLSLRTVVDPQTMDWTPSPGGHVLRKRLHRVGQSESGQVTSLVRYEPGATFPAHDHPLGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSHEGCLLFVKLRQYPGPDREHVAIATHNKPWQPSIRKNTSWKKLYAQEPYTDFMRLESWDEPSAIGQINFPQGAEILVLRGSFADEHGHYSTHCWLRIPAGGTVNPISDDYCELYIKEGGFTY 678
MTD+ A+NGDLS R V+ M W+ SPG V RKR+HRVG +ESGQVTS+VRYEPGA FP+HDHP GEEILVLEGVFSDE GDWPAGSYLLNPEGF+HAP+S +GC LFVKLRQYPG DRE VA+ T + W+PS+R+N WKKLYAQEPY+DFMRLE+WD P+ +GQINFP+GAE+ VL G FADEHG Y THCWLRIPAGG++ P SDDYCELYIKEGGFTY
Sbjct: 1 MTDSNKAINGDLSKRVAVETSDMPWSASPGVDVWRKRVHRVGPTESGQVTSVVRYEPGARFPSHDHPQGEEILVLEGVFSDEQGDWPAGSYLLNPEGFRHAPWSEQGCTLFVKLRQYPGADRERVALQTRDSQWRPSVRRNVQWKKLYAQEPYSDFMRLEAWDAPAELGQINFPRGAELFVLSGRFADEHGEYGTHCWLRIPAGGSITPTSDDYCELYIKEGGFTY 226
BLAST of mRNA_L-digitata_M_contig100637.2.1 vs. uniprot
Match: UPI00167B3D38 (cupin domain-containing protein n=1 Tax=Halioglobus pacificus TaxID=930806 RepID=UPI00167B3D38) HSP 1 Score: 370 bits (951), Expect = 1.800e-128 Identity = 161/226 (71.24%), Postives = 191/226 (84.51%), Query Frame = 1
Query: 1 MTDNRVALNGDLSLRTVVDPQTMDWTPSPGGHVLRKRLHRVGQSESGQVTSLVRYEPGATFPAHDHPLGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSHEGCLLFVKLRQYPGPDREHVAIATHNKPWQPSIRKNTSWKKLYAQEPYTDFMRLESWDEPSAIGQINFPQGAEILVLRGSFADEHGHYSTHCWLRIPAGGTVNPISDDYCELYIKEGGFTY 678
MT++ ALN DLS+R +D M +TPSPGGHVLRKRLHRVG +E+GQVTS+V+Y+PGA FPAHDH GEEILVL+G+FSDEHGDWPAG+YLLNPEGF+H+PFS +GCLLFVKLRQ+ G DR+H+A+ T ++ W+PS+RK SWKKLYAQEPYTDFMRLE WD P +GQ+NFPQGAE+LVL G FAD GHY H WLRIPAGGT+ P+SD CE+YIKEGGFTY
Sbjct: 1 MTNDEEALNADLSVRLAIDTDAMAFTPSPGGHVLRKRLHRVGPAEAGQVTSIVQYQPGAQFPAHDHLEGEEILVLDGIFSDEHGDWPAGTYLLNPEGFRHSPFSKDGCLLFVKLRQFHGRDRQHIALQTRDEAWRPSVRKTVSWKKLYAQEPYTDFMRLERWDSPQEMGQLNFPQGAELLVLEGGFADGQGHYPVHAWLRIPAGGTLTPVSDARCEVYIKEGGFTY 226
BLAST of mRNA_L-digitata_M_contig100637.2.1 vs. uniprot
Match: A0A5C8ZXS5_9GAMM (Anti-sigma factor n=2 Tax=Parahaliea TaxID=1857932 RepID=A0A5C8ZXS5_9GAMM) HSP 1 Score: 370 bits (951), Expect = 2.960e-128 Identity = 164/226 (72.57%), Postives = 188/226 (83.19%), Query Frame = 1
Query: 1 MTDNRVALNGDLSLRTVVDPQTMDWTPSPGGHVLRKRLHRVGQSESGQVTSLVRYEPGATFPAHDHPLGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSHEGCLLFVKLRQYPGPDREHVAIATHNKPWQPSIRKNTSWKKLYAQEPYTDFMRLESWDEPSAIGQINFPQGAEILVLRGSFADEHGHYSTHCWLRIPAGGTVNPISDDYCELYIKEGGFTY 678
MT+ A+NGDLS R VV Q M W+ SPG V RKR+HRVG +ESGQVTS+VRYEPGA FP HDHP GEEILVLEGVFSDE GDWPAGSYLLNPEGF+HAP+S +GC LFVKLRQ+PG DR+ VA+ T ++PWQ S+R++ WKKLYAQEPYTDFMRLE+WD P+ +GQINFP+GAE+ VL+G FAD HG Y TH WLRIPAGG + P SDDYCELYIKEGGFTY
Sbjct: 1 MTNENQAINGDLSQRVVVATQAMPWSASPGADVWRKRVHRVGAAESGQVTSVVRYEPGARFPGHDHPQGEEILVLEGVFSDEQGDWPAGSYLLNPEGFRHAPWSEQGCTLFVKLRQFPGADRQKVAMQTQDQPWQSSVRRSVQWKKLYAQEPYTDFMRLEAWDSPAELGQINFPRGAELFVLKGRFADAHGEYGTHTWLRIPAGGALTPNSDDYCELYIKEGGFTY 226
BLAST of mRNA_L-digitata_M_contig100637.2.1 vs. uniprot
Match: A0A7W2YKL5_9GAMM (Cupin domain-containing protein n=1 Tax=Sediminihaliea albiluteola TaxID=2758564 RepID=A0A7W2YKL5_9GAMM) HSP 1 Score: 366 bits (940), Expect = 1.350e-126 Identity = 163/226 (72.12%), Postives = 188/226 (83.19%), Query Frame = 1
Query: 1 MTDNRVALNGDLSLRTVVDPQTMDWTPSPGGHVLRKRLHRVGQSESGQVTSLVRYEPGATFPAHDHPLGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSHEGCLLFVKLRQYPGPDREHVAIATHNKPWQPSIRKNTSWKKLYAQEPYTDFMRLESWDEPSAIGQINFPQGAEILVLRGSFADEHGHYSTHCWLRIPAGGTVNPISDDYCELYIKEGGFTY 678
M + A++GDLS R VVD Q M W+PSP V RKRLH+VG ESGQVTS+VRYEPGA F HDHP GEEILVLEGVFSDE GDWPAGSYLLNPEGF HAP+S GC LFVKLRQ+PG DRE VAI T ++ WQ S+R++ W+KLYAQ+PYTDFMRLE+WD P +GQINFPQGAE+LV++GSF+DE+GHY TH WLRIPAGG +NPISDDYCE+YIKEGGF+Y
Sbjct: 1 MNNKYQAIHGDLSKRVVVDTQAMSWSPSPANKVWRKRLHQVGPGESGQVTSIVRYEPGARFHKHDHPEGEEILVLEGVFSDEQGDWPAGSYLLNPEGFCHAPWSETGCTLFVKLRQFPGHDRERVAIQTRDQAWQSSVRRSVQWQKLYAQDPYTDFMRLEAWDSPDEMGQINFPQGAEVLVIKGSFSDENGHYGTHSWLRIPAGGLLNPISDDYCEVYIKEGGFSY 226
BLAST of mRNA_L-digitata_M_contig100637.2.1 vs. uniprot
Match: A0A4R2KPA9_9GAMM (ChrR-like anti-ECFsigma factor n=1 Tax=Chromatocurvus halotolerans TaxID=1132028 RepID=A0A4R2KPA9_9GAMM) HSP 1 Score: 360 bits (924), Expect = 2.420e-124 Identity = 156/224 (69.64%), Postives = 188/224 (83.93%), Query Frame = 1
Query: 7 DNRVALNGDLSLRTVVDPQTMDWTPSPGGHVLRKRLHRVGQSESGQVTSLVRYEPGATFPAHDHPLGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSHEGCLLFVKLRQYPGPDREHVAIATHNKPWQPSIRKNTSWKKLYAQEPYTDFMRLESWDEPSAIGQINFPQGAEILVLRGSFADEHGHYSTHCWLRIPAGGTVNPISDDYCELYIKEGGFTY 678
D++V LN D S R VD + M+WTPSPGGHVLRKRLH VG++E+GQVTSLV+Y P + FP H+HP GEEILVLEGVFSDE GD+PAGSYLLNPEGF H PFS EGCLLFVKLRQYPG DRE +A+ T ++PW+ S+RK SWKKLYAQEPYTDF RLE+WDEP+++G++NFP GAEILV+RG F+DEHGHY + WLR+P GG++ P S+ YCE++IKEGGF Y
Sbjct: 2 DDKVFLNADFSRRVAVDTEKMEWTPSPGGHVLRKRLHLVGRAEAGQVTSLVQYLPDSEFPEHNHPDGEEILVLEGVFSDETGDYPAGSYLLNPEGFSHKPFSREGCLLFVKLRQYPGQDRERIAVQTADQPWRSSVRKGASWKKLYAQEPYTDFSRLEAWDEPASLGRLNFPGGAEILVIRGEFSDEHGHYGQYSWLRVPQGGSITPTSNSYCEVFIKEGGFAY 225
BLAST of mRNA_L-digitata_M_contig100637.2.1 vs. uniprot
Match: A0A095WZM8_9GAMM (Uncharacterized protein n=2 Tax=Halieaceae TaxID=1706372 RepID=A0A095WZM8_9GAMM) HSP 1 Score: 339 bits (869), Expect = 6.170e-116 Identity = 147/226 (65.04%), Postives = 179/226 (79.20%), Query Frame = 1
Query: 1 MTDNRVALNGDLSLRTVVDPQTMDWTPSPGGHVLRKRLHRVGQSESGQVTSLVRYEPGATFPAHDHPLGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSHEGCLLFVKLRQYPGPDREHVAIATHNKPWQPSIRKNTSWKKLYAQEPYTDFMRLESWDEPSAIGQINFPQGAEILVLRGSFADEHGHYSTHCWLRIPAGGTVNPISDDYCELYIKEGGFTY 678
M+ ++ LNGD R +D Q + W+PSPGGHV RKRLH VG++E+GQVTSLVRYEPGA FP HDHP GEEILVLEGVFSD+ G WPAG+YLLNPEG+ HAP+S +GC LFVKLRQYPG DRE +A+ T ++PW+ S+RK +WKKLYAQEPY D RLE W+EP+++G + FP GAEILVL G+F D++G Y WLRIPAGGT+ P +YCELY+KEGGF Y
Sbjct: 1 MSQDQQVLNGDFRQRLTIDTQDLPWSPSPGGHVQRKRLHLVGRAEAGQVTSLVRYEPGARFPRHDHPEGEEILVLEGVFSDDRGHWPAGTYLLNPEGYSHAPYSEDGCTLFVKLRQYPGNDREKIALETADQPWRGSVRKGVAWKKLYAQEPYADSARLERWEEPASLGTLTFPAGAEILVLAGAFTDDYGTYRRWSWLRIPAGGTLAPTGGEYCELYVKEGGFAY 226 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100637.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100637.2.1 >prot_L-digitata_M_contig100637.2.1 ID=prot_L-digitata_M_contig100637.2.1|Name=mRNA_L-digitata_M_contig100637.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=226bp MTDNRVALNGDLSLRTVVDPQTMDWTPSPGGHVLRKRLHRVGQSESGQVTback to top mRNA from alignment at L-digitata_M_contig100637:262..939+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100637.2.1 ID=mRNA_L-digitata_M_contig100637.2.1|Name=mRNA_L-digitata_M_contig100637.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=678bp|location=Sequence derived from alignment at L-digitata_M_contig100637:262..939+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100637:262..939+ >mRNA_L-digitata_M_contig100637.2.1 ID=mRNA_L-digitata_M_contig100637.2.1|Name=mRNA_L-digitata_M_contig100637.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=678bp|location=Sequence derived from alignment at L-digitata_M_contig100637:262..939+ (Laminaria digitata LdigPH10_18mv male)back to top |