mRNA_L-digitata_M_contig100502.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100502.1.1
Unique NamemRNA_L-digitata_M_contig100502.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100502.1.1 vs. uniprot
Match: A0A2D9I3E6_9PROT (Enoyl-CoA hydratase n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A2D9I3E6_9PROT)

HSP 1 Score: 258 bits (660), Expect = 7.740e-85
Identity = 127/160 (79.38%), Postives = 142/160 (88.75%), Query Frame = 1
Query:    1 MTPDETVIFDCSKDGIATITLNRPERRNALSAAAAERLYDLWEQIDADRQIRAVVLTATPCGTFCAGMDLKEASAIREEQGIDVLSTIRDPFHERMRQVRVPIIAAMTGHFAAGGFMLSLNADIRVGLAGTSGGITEVKRGRGSPWAMPLLWQLPQPVLM 480
            M+ +E V FDC+ DGIATITLNRPERRNALS AA ERLYDLWE IDA  +IR VVLTA PCGTFCAGMDLKEAS I+ +QG+DVL+ +RDPFH+RMR VR PIIAAMTGHFAAGGFMLSLNADIR+G+AGTSGGITE KRGRGSPWA+PLLWQ+PQP+ M
Sbjct:    1 MSAEEIVRFDCA-DGIATITLNRPERRNALSIAAVERLYDLWETIDARPEIRVVVLTAAPCGTFCAGMDLKEASEIKVKQGVDVLTLLRDPFHQRMRAVRAPIIAAMTGHFAAGGFMLSLNADIRIGVAGTSGGITESKRGRGSPWAVPLLWQVPQPLFM 159          
BLAST of mRNA_L-digitata_M_contig100502.1.1 vs. uniprot
Match: A0A2E2E326_9PROT (Enoyl-CoA hydratase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E2E326_9PROT)

HSP 1 Score: 258 bits (660), Expect = 7.740e-85
Identity = 125/160 (78.12%), Postives = 142/160 (88.75%), Query Frame = 1
Query:    1 MTPDETVIFDCSKDGIATITLNRPERRNALSAAAAERLYDLWEQIDADRQIRAVVLTATPCGTFCAGMDLKEASAIREEQGIDVLSTIRDPFHERMRQVRVPIIAAMTGHFAAGGFMLSLNADIRVGLAGTSGGITEVKRGRGSPWAMPLLWQLPQPVLM 480
            M+ D+ V FDC+ DGIATITLNRP+RRNALS AA ERLYDLWE IDA  +IR VVLTA PCGTFCAGMDLKEAS I+  +G+DVL+ +RDPFH+RMR VRVPIIAAMTGHFAAGGFMLS+NADIR+G+AGTSGGITE KRGRGSPWA+PLLWQ+PQP+ M
Sbjct:    1 MSADQIVGFDCA-DGIATITLNRPDRRNALSVAAVERLYDLWETIDARPEIRVVVLTAAPCGTFCAGMDLKEASEIQASRGVDVLTLLRDPFHQRMRSVRVPIIAAMTGHFAAGGFMLSMNADIRIGVAGTSGGITEAKRGRGSPWAVPLLWQVPQPIFM 159          
BLAST of mRNA_L-digitata_M_contig100502.1.1 vs. uniprot
Match: A0A3S4BIP5_9HYPH (Enoyl-CoA-hydratase n=1 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A3S4BIP5_9HYPH)

HSP 1 Score: 256 bits (655), Expect = 4.310e-84
Identity = 125/160 (78.12%), Postives = 147/160 (91.88%), Query Frame = 1
Query:    1 MTPDETVIFDCSKDGIATITLNRPERRNALSAAAAERLYDLWEQIDADRQIRAVVLTATPCGTFCAGMDLKEASAIREEQGIDVLSTIRDPFHERMRQVRVPIIAAMTGHFAAGGFMLSLNADIRVGLAGTSGGITEVKRGRGSPWAMPLLWQLPQPVLM 480
            M+P+E+V+F+ + DG+ATITLNRPERRNALS AAA+RL+DLW++ID  R+IRAVVLTA PCGTFCAGMDLKEAS I   +GIDVL+ +RDPFHERMR+VRVPI+AAMTGHFAAGGFMLSLNAD+RVGLAGT+GGITE KRGRGSPWAMPLLWQ+ QP++M
Sbjct:    1 MSPEESVLFEVA-DGLATITLNRPERRNALSVAAADRLHDLWDEIDCRREIRAVVLTAAPCGTFCAGMDLKEASEIAA-RGIDVLNLVRDPFHERMRRVRVPIVAAMTGHFAAGGFMLSLNADLRVGLAGTTGGITEAKRGRGSPWAMPLLWQMAQPIVM 158          
BLAST of mRNA_L-digitata_M_contig100502.1.1 vs. uniprot
Match: A0A8J7V2T5_9PROT (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Marivibrio halodurans TaxID=2039722 RepID=A0A8J7V2T5_9PROT)

HSP 1 Score: 252 bits (644), Expect = 2.090e-82
Identity = 124/160 (77.50%), Postives = 140/160 (87.50%), Query Frame = 1
Query:    1 MTPDETVIFDCSKDGIATITLNRPERRNALSAAAAERLYDLWEQIDADRQIRAVVLTATPCGTFCAGMDLKEASAIREEQGIDVLSTIRDPFHERMRQVRVPIIAAMTGHFAAGGFMLSLNADIRVGLAGTSGGITEVKRGRGSPWAMPLLWQLPQPVLM 480
            M  ++ V+FD + DGIA ITLNRPERRNALS AAAERL+DLWE +DA   IR V+LTA  CGTFCAGMDLKEAS +R+ +G+DVL+ +RDPFH+RMR VRVPIIAAMTGHFAAGGFMLSLNADIRVGL+GT GGITE KRGRGSPWAMPLLWQLPQP+LM
Sbjct:    1 MEANDIVLFDVA-DGIAEITLNRPERRNALSVAAAERLHDLWETVDARDDIRVVILTAAACGTFCAGMDLKEASELRQSRGVDVLTLLRDPFHQRMRAVRVPIIAAMTGHFAAGGFMLSLNADIRVGLSGTRGGITETKRGRGSPWAMPLLWQLPQPMLM 159          
BLAST of mRNA_L-digitata_M_contig100502.1.1 vs. uniprot
Match: A0A3L7APU3_9HYPH (Enoyl-CoA hydratase/isomerase family protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A3L7APU3_9HYPH)

HSP 1 Score: 249 bits (637), Expect = 2.340e-81
Identity = 125/160 (78.12%), Postives = 140/160 (87.50%), Query Frame = 1
Query:    1 MTPDETVIFDCSKDGIATITLNRPERRNALSAAAAERLYDLWEQIDADRQIRAVVLTATPCGTFCAGMDLKEASAIREEQGIDVLSTIRDPFHERMRQVRVPIIAAMTGHFAAGGFMLSLNADIRVGLAGTSGGITEVKRGRGSPWAMPLLWQLPQPVLM 480
            M PDE V F+ S  G+ATITLNRPERRNALS AAAERL+DLWE++D    IRAV+LTA PCGTFCAGMDLKEAS+I  E G DVL  IRDPFHERMR+VR PIIAAMTGHFAAGGF+L+LNADIR+G+AGTSGGITE KRGRGSPWA+PLLWQ+PQPV+M
Sbjct:    1 MLPDEIVQFEVS-GGLATITLNRPERRNALSVAAAERLFDLWEEVDRRLDIRAVILTAAPCGTFCAGMDLKEASSIGAEGG-DVLEMIRDPFHERMRRVRAPIIAAMTGHFAAGGFLLALNADIRIGVAGTSGGITEAKRGRGSPWAVPLLWQMPQPVVM 158          
BLAST of mRNA_L-digitata_M_contig100502.1.1 vs. uniprot
Match: A0A7G3CZ75_9RHOB (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Carideicomes alvinocaridis TaxID=2541728 RepID=A0A7G3CZ75_9RHOB)

HSP 1 Score: 243 bits (621), Expect = 6.510e-79
Identity = 113/154 (73.38%), Postives = 135/154 (87.66%), Query Frame = 1
Query:   19 VIFDCSKDGIATITLNRPERRNALSAAAAERLYDLWEQIDADRQIRAVVLTATPCGTFCAGMDLKEASAIREEQGIDVLSTIRDPFHERMRQVRVPIIAAMTGHFAAGGFMLSLNADIRVGLAGTSGGITEVKRGRGSPWAMPLLWQLPQPVLM 480
            ++F+C KDGIAT+TLNRPERRNALS A A RL++ WE++DA   IR  +LT+ PCGTFCAGMDLKEAS +R E+G+D+L+ I+DPFHERMR VR P+IAAMTGHFAAGGFML+LN+DIRVGLAGTSGGITE K GRG PWAMP+LWQLPQP++M
Sbjct:    7 ILFEC-KDGIATVTLNRPERRNALSVAMANRLFEAWEEVDARDDIRVAILTSAPCGTFCAGMDLKEASELRREKGVDILTLIQDPFHERMRAVRKPVIAAMTGHFAAGGFMLALNSDIRVGLAGTSGGITEAKVGRGCPWAMPVLWQLPQPIVM 159          
BLAST of mRNA_L-digitata_M_contig100502.1.1 vs. uniprot
Match: A0A0T5NQX2_9RHOB (Enoyl-CoA hydratase n=2 Tax=Roseovarius atlanticus TaxID=1641875 RepID=A0A0T5NQX2_9RHOB)

HSP 1 Score: 232 bits (591), Expect = 2.340e-74
Identity = 110/160 (68.75%), Postives = 133/160 (83.12%), Query Frame = 1
Query:    1 MTPDETVIFDCSKDGIATITLNRPERRNALSAAAAERLYDLWEQIDADRQIRAVVLTATPCGTFCAGMDLKEASAIREEQGIDVLSTIRDPFHERMRQVRVPIIAAMTGHFAAGGFMLSLNADIRVGLAGTSGGITEVKRGRGSPWAMPLLWQLPQPVLM 480
            MT  + V  +   D +AT+++NRPERRNALS  AA  L+D+WE+IDADR +RAVVLT+  CGTFCAGMDLKEA+ ++ EQG D+L  I DPFH+RMR+V+VPIIAAMTGHFAAGGFML LN+DIRVGL GT+GG+TEVKRGRGSPWA+P+LWQLP P  M
Sbjct:    1 MTSQDVVTLEIL-DHVATVSINRPERRNALSIVAANELHDIWEKIDADRSVRAVVLTSAQCGTFCAGMDLKEAAEVKREQGRDILDLIHDPFHQRMRRVKVPIIAAMTGHFAAGGFMLMLNSDIRVGLEGTTGGVTEVKRGRGSPWAVPILWQLPLPFAM 159          
BLAST of mRNA_L-digitata_M_contig100502.1.1 vs. uniprot
Match: UPI001FAD26AE (enoyl-CoA hydratase-related protein n=1 Tax=Sulfitobacter dubius TaxID=218673 RepID=UPI001FAD26AE)

HSP 1 Score: 232 bits (591), Expect = 2.340e-74
Identity = 111/160 (69.38%), Postives = 135/160 (84.38%), Query Frame = 1
Query:    1 MTPDETVIFDCSKDGIATITLNRPERRNALSAAAAERLYDLWEQIDADRQIRAVVLTATPCGTFCAGMDLKEASAIREEQGIDVLSTIRDPFHERMRQVRVPIIAAMTGHFAAGGFMLSLNADIRVGLAGTSGGITEVKRGRGSPWAMPLLWQLPQPVLM 480
            M+ D  V  D  +  IAT+++NRPERRNALS  AA RL+D+WE+IDA+  IR  +LT+  CGTFCAGMDLK+A+ I+ E+G+D+LS IRDPFH+RMR+V VPIIAAMTGHFAAGGFML LN+DIRVGLA TSGG+TEVKRGRGSPWA+P+LWQLPQP +M
Sbjct:    1 MSDDNIVSLDI-EGHIATVSINRPERRNALSIEAANRLHDIWEEIDANSDIRVAILTSAQCGTFCAGMDLKQAAQIKAEKGVDILSLIRDPFHQRMRRVNVPIIAAMTGHFAAGGFMLMLNSDIRVGLADTSGGVTEVKRGRGSPWAVPVLWQLPQPFVM 159          
BLAST of mRNA_L-digitata_M_contig100502.1.1 vs. uniprot
Match: UPI0019BDC6EB (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Bdellovibrionales bacterium TaxID=2053517 RepID=UPI0019BDC6EB)

HSP 1 Score: 223 bits (568), Expect = 7.440e-71
Identity = 106/156 (67.95%), Postives = 128/156 (82.05%), Query Frame = 1
Query:   13 ETVIFDCSKDGIATITLNRPERRNALSAAAAERLYDLWEQIDADRQIRAVVLTATPCGTFCAGMDLKEASAIREEQGIDVLSTIRDPFHERMRQVRVPIIAAMTGHFAAGGFMLSLNADIRVGLAGTSGGITEVKRGRGSPWAMPLLWQLPQPVLM 480
            + V+F    DGIATI LNRPERRNALS AA ERLY++W+Q+DAD  I   +LT+T CGTFCAGMDL+EA+ +RE+ G D+L  +RDP ++RMR VRVPIIAAMTGHF AGG +LSLN D+R+GLAGTSGGITE K GRGSPWA+P+LW + QPVLM
Sbjct:    6 DAVLFSID-DGIATIVLNRPERRNALSIAANERLYEIWDQLDADPSIHVAILTSTDCGTFCAGMDLREAAEMREKTGKDILQLLRDPMYQRMRMVRVPIIAAMTGHFTAGGMVLSLNCDLRIGLAGTSGGITETKVGRGSPWAVPMLWMMAQPVLM 160          
BLAST of mRNA_L-digitata_M_contig100502.1.1 vs. uniprot
Match: A0A2D8X631_9FLAO (Enoyl-CoA hydratase n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D8X631_9FLAO)

HSP 1 Score: 222 bits (565), Expect = 2.060e-70
Identity = 104/147 (70.75%), Postives = 125/147 (85.03%), Query Frame = 1
Query:   40 DGIATITLNRPERRNALSAAAAERLYDLWEQIDADRQIRAVVLTATPCGTFCAGMDLKEASAIREEQGIDVLSTIRDPFHERMRQVRVPIIAAMTGHFAAGGFMLSLNADIRVGLAGTSGGITEVKRGRGSPWAMPLLWQLPQPVLM 480
            D +AT+++NRPERRNALS AAA  L++ WE IDAD  +RAVVLT+  CGTFCAGMDLKEA+ I+ +   D+L  I+DPFH+RMR+V+ PIIAAMTGHFAAGGFML LN+DIRVGLAGT+GG+TEVKRGRGSPWA+P+LWQLP P  M
Sbjct:   13 DHVATVSINRPERRNALSVAAANGLFETWELIDADPSVRAVVLTSARCGTFCAGMDLKEANEIKRDSNRDILDLIQDPFHQRMRKVKAPIIAAMTGHFAAGGFMLMLNSDIRVGLAGTTGGVTEVKRGRGSPWAVPILWQLPLPFAM 159          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100502.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9I3E6_9PROT7.740e-8579.38Enoyl-CoA hydratase n=2 Tax=Rhodospirillales TaxID... [more]
A0A2E2E326_9PROT7.740e-8578.13Enoyl-CoA hydratase n=1 Tax=Rhodospirillaceae bact... [more]
A0A3S4BIP5_9HYPH4.310e-8478.13Enoyl-CoA-hydratase n=1 Tax=Rhodoplanes piscinae T... [more]
A0A8J7V2T5_9PROT2.090e-8277.50Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A3L7APU3_9HYPH2.340e-8178.13Enoyl-CoA hydratase/isomerase family protein n=2 T... [more]
A0A7G3CZ75_9RHOB6.510e-7973.38Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A0T5NQX2_9RHOB2.340e-7468.75Enoyl-CoA hydratase n=2 Tax=Roseovarius atlanticus... [more]
UPI001FAD26AE2.340e-7469.38enoyl-CoA hydratase-related protein n=1 Tax=Sulfit... [more]
UPI0019BDC6EB7.440e-7167.95Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A2D8X631_9FLAO2.060e-7070.75Enoyl-CoA hydratase n=1 Tax=Flavobacteriaceae bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100502contigL-digitata_M_contig100502:2..481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1123504.JQKD01000004_gene5045
PFAMsECH_1
Model size480
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.92e-67
EggNOG OGsCOG1024@1|root,COG1024@2|Bacteria,1QGFN@1224|Proteobacteria,2VQC1@28216|Betaproteobacteria,4AH4Y@80864|Comamonadaceae
DescriptionEnoyl-CoA hydratase/isomerase
Cds size480
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406607.8970525-CDS-L-digitata_M_contig100502:1..4811682406607.8970525-CDS-L-digitata_M_contig100502:1..481Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100502 2..481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100502.1.1prot_L-digitata_M_contig100502.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100502 2..481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100502.1.1

>prot_L-digitata_M_contig100502.1.1 ID=prot_L-digitata_M_contig100502.1.1|Name=mRNA_L-digitata_M_contig100502.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=160bp
MTPDETVIFDCSKDGIATITLNRPERRNALSAAAAERLYDLWEQIDADRQ
IRAVVLTATPCGTFCAGMDLKEASAIREEQGIDVLSTIRDPFHERMRQVR
VPIIAAMTGHFAAGGFMLSLNADIRVGLAGTSGGITEVKRGRGSPWAMPL
LWQLPQPVLM
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mRNA from alignment at L-digitata_M_contig100502:2..481-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100502.1.1 ID=mRNA_L-digitata_M_contig100502.1.1|Name=mRNA_L-digitata_M_contig100502.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=480bp|location=Sequence derived from alignment at L-digitata_M_contig100502:2..481- (Laminaria digitata LdigPH10_18mv male)
ATGACCCCGGACGAAACGGTGATCTTTGACTGTTCGAAAGATGGCATAGC GACAATCACGCTGAACCGACCGGAACGGCGTAACGCGTTGTCGGCCGCGG CGGCCGAGCGGCTTTATGACTTATGGGAGCAGATTGATGCTGACCGCCAG ATACGAGCCGTTGTTCTGACCGCCACGCCTTGCGGGACCTTTTGCGCCGG AATGGATTTGAAAGAGGCCAGCGCCATTCGGGAAGAACAGGGGATTGATG TATTGTCGACCATTCGCGATCCGTTTCATGAACGTATGAGACAGGTCCGC GTTCCGATCATTGCAGCAATGACCGGACATTTTGCGGCAGGCGGCTTCAT GCTTTCGCTGAACGCCGATATCCGGGTCGGCCTTGCCGGCACAAGCGGTG GCATCACCGAGGTAAAACGAGGCCGTGGCTCGCCCTGGGCCATGCCGCTG CTCTGGCAGCTTCCTCAGCCGGTGCTCATG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100502:2..481-

>mRNA_L-digitata_M_contig100502.1.1 ID=mRNA_L-digitata_M_contig100502.1.1|Name=mRNA_L-digitata_M_contig100502.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=480bp|location=Sequence derived from alignment at L-digitata_M_contig100502:2..481- (Laminaria digitata LdigPH10_18mv male)
ATGACCCCGGACGAAACGGTGATCTTTGACTGTTCGAAAGATGGCATAGC
GACAATCACGCTGAACCGACCGGAACGGCGTAACGCGTTGTCGGCCGCGG
CGGCCGAGCGGCTTTATGACTTATGGGAGCAGATTGATGCTGACCGCCAG
ATACGAGCCGTTGTTCTGACCGCCACGCCTTGCGGGACCTTTTGCGCCGG
AATGGATTTGAAAGAGGCCAGCGCCATTCGGGAAGAACAGGGGATTGATG
TATTGTCGACCATTCGCGATCCGTTTCATGAACGTATGAGACAGGTCCGC
GTTCCGATCATTGCAGCAATGACCGGACATTTTGCGGCAGGCGGCTTCAT
GCTTTCGCTGAACGCCGATATCCGGGTCGGCCTTGCCGGCACAAGCGGTG
GCATCACCGAGGTAAAACGAGGCCGTGGCTCGCCCTGGGCCATGCCGCTG
CTCTGGCAGCTTCCTCAGCCGGTGCTCATG
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