mRNA_L-digitata_M_contig100484.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100484.1.1
Unique NamemRNA_L-digitata_M_contig100484.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100484.1.1 vs. uniprot
Match: A0A3B8JJF2_9CYAN (Tetratricopeptide repeat-containing protein (Fragment) n=1 Tax=Cyanobacteria bacterium UBA8553 TaxID=2055771 RepID=A0A3B8JJF2_9CYAN)

HSP 1 Score: 64.3 bits (155), Expect = 4.660e-12
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    4 QGNYAEAGPLYKRSLAIDEKALGPEHPSVATSLNNLAGL 120
            QGNY++A PLY+RSLAI EKALG EHP+VATSLNNLA L
Sbjct:    9 QGNYSQAEPLYQRSLAIWEKALGSEHPNVATSLNNLADL 47
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BLAST of mRNA_L-digitata_M_contig100484.1.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 62.4 bits (150), Expect = 4.790e-11
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 AQGNYAEAGPLYKRSLAIDEKALGPEHPSVATSLNNLAGLF 123
            +QG Y EA PLY+R+L I E  LGP+HPSVAT+LNNLAGL+
Sbjct:    3 SQGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGLY 43
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BLAST of mRNA_L-digitata_M_contig100484.1.1 vs. uniprot
Match: U9W4Q0_9CYAN (Kinesin light chain 1 (Fragment) n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9W4Q0_9CYAN)

HSP 1 Score: 62.4 bits (150), Expect = 6.950e-11
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    4 QGNYAEAGPLYKRSLAIDEKALGPEHPSVATSLNNLAGLFR 126
            QG Y EA PLY+RSL I E+ LGP+HP V TSLNNLAGL++
Sbjct:    2 QGRYEEAEPLYQRSLGIREEQLGPQHPDVVTSLNNLAGLYQ 42
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BLAST of mRNA_L-digitata_M_contig100484.1.1 vs. uniprot
Match: A0A2W4QJT5_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Methylumidiphilus alinenensis TaxID=2202197 RepID=A0A2W4QJT5_9GAMM)

HSP 1 Score: 62.4 bits (150), Expect = 7.120e-11
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 AQGNYAEAGPLYKRSLAIDEKALGPEHPSVATSLNNLAGL 120
            +QG YAEA PLY+ SLAI EKALG +HP VA SLNNLAGL
Sbjct:    7 SQGKYAEAEPLYQSSLAIAEKALGKDHPDVAVSLNNLAGL 46
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BLAST of mRNA_L-digitata_M_contig100484.1.1 vs. uniprot
Match: D8LCT1_ECTSI (Tetratricopeptide repeat family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT1_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.670e-10
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 AQGNYAEAGPLYKRSLAIDEKALGPEHPSVATSLNNLAGLFR 126
            +QGNY EAG LY+RSLAI EKALGPEHP+ AT+L N AGL R
Sbjct:    3 SQGNYKEAGRLYERSLAIREKALGPEHPAFATTLTNQAGLLR 44
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BLAST of mRNA_L-digitata_M_contig100484.1.1 vs. uniprot
Match: A0A7C7YGX5_9DELT (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7YGX5_9DELT)

HSP 1 Score: 60.5 bits (145), Expect = 2.100e-10
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    4 QGNYAEAGPLYKRSLAIDEKALGPEHPSVATSLNN 108
            QG YAEA PL KRSLAI EKALGPEHP+VA SLNN
Sbjct:   31 QGRYAEAEPLVKRSLAIKEKALGPEHPAVAQSLNN 65
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BLAST of mRNA_L-digitata_M_contig100484.1.1 vs. uniprot
Match: A0A6H5KWM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.550e-10
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    4 QGNYAEAGPLYKRSLAIDEKALGPEHPSVATSLNNLAGLFRA 129
            QGNY +AG LYKRSLAI EK LGP+HP+VA SLNN AGL  A
Sbjct:  129 QGNYDQAGMLYKRSLAIREKVLGPDHPNVAQSLNNRAGLLSA 170
[Close]
BLAST of mRNA_L-digitata_M_contig100484.1.1 vs. uniprot
Match: A0A651EKG2_9CYAN (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Leptolyngbya sp. DLM2.Bin15 TaxID=2480212 RepID=A0A651EKG2_9CYAN)

HSP 1 Score: 61.2 bits (147), Expect = 3.410e-10
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 AQGNYAEAGPLYKRSLAIDEKALGPEHPSVATSLNNLAGLFRA 129
            + G Y EA PLY RSL+I E+ LG +HP+VATSLNNLAGL+R+
Sbjct:    2 SMGRYGEAEPLYARSLSIAEQQLGVDHPAVATSLNNLAGLYRS 44
[Close]
BLAST of mRNA_L-digitata_M_contig100484.1.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.970e-10
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 AQGNYAEAGPLYKRSLAIDEKALGPEHPSVATSLNNLAGLFRA 129
            AQGNY EAG LY+RSLAI EKALGP+HP VA SLNN A L  A
Sbjct:  426 AQGNYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWALLLEA 468
[Close]
BLAST of mRNA_L-digitata_M_contig100484.1.1 vs. uniprot
Match: A0A6M0C7W0_9CYAN (Tetratricopeptide repeat-containing protein (Fragment) n=1 Tax=Okeania sp. SIO2H7 TaxID=2607802 RepID=A0A6M0C7W0_9CYAN)

HSP 1 Score: 62.8 bits (151), Expect = 8.850e-10
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    4 QGNYAEAGPLYKRSLAIDEKALGPEHPSVATSLNNLAGLFR 126
            QG Y EA PL +++LAI EKALGP+HPSVATSLNNLA L+R
Sbjct:   10 QGKYGEAIPLAEKALAIREKALGPDHPSVATSLNNLAELYR 50
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100484.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B8JJF2_9CYAN4.660e-1279.49Tetratricopeptide repeat-containing protein (Fragm... [more]
UPI0013D295284.790e-1168.29tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
U9W4Q0_9CYAN6.950e-1168.29Kinesin light chain 1 (Fragment) n=1 Tax=Leptolyng... [more]
A0A2W4QJT5_9GAMM7.120e-1175.00Uncharacterized protein n=1 Tax=Candidatus Methylu... [more]
D8LCT1_ECTSI1.670e-1073.81Tetratricopeptide repeat family n=1 Tax=Ectocarpus... [more]
A0A7C7YGX5_9DELT2.100e-1082.86Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
A0A6H5KWM2_9PHAE2.550e-1073.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A651EKG2_9CYAN3.410e-1065.12Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
A0A6H5K4D0_9PHAE5.970e-1074.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6M0C7W0_9CYAN8.850e-1073.17Tetratricopeptide repeat-containing protein (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100484contigL-digitata_M_contig100484:137..852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LCT1
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size258
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.74e-11
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size258
COG categoryC
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406607.6541998-CDS-L-digitata_M_contig100484:136..2621682406607.6541998-CDS-L-digitata_M_contig100484:136..262Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100484 137..262 -
1682406607.6638825-CDS-L-digitata_M_contig100484:720..8521682406607.6638825-CDS-L-digitata_M_contig100484:720..852Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100484 721..852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100484.1.1prot_L-digitata_M_contig100484.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100484 137..852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100484.1.1

>prot_L-digitata_M_contig100484.1.1 ID=prot_L-digitata_M_contig100484.1.1|Name=mRNA_L-digitata_M_contig100484.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=86bp
AQGNYAEAGPLYKRSLAIDEKALGPEHPSVATSLNNLAGLFRAQGNYAEA
GPLYKRSLAIDEKALGPEHPSVATSLNNLAGLFETQ
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mRNA from alignment at L-digitata_M_contig100484:137..852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100484.1.1 ID=mRNA_L-digitata_M_contig100484.1.1|Name=mRNA_L-digitata_M_contig100484.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=716bp|location=Sequence derived from alignment at L-digitata_M_contig100484:137..852- (Laminaria digitata LdigPH10_18mv male)
GCGCAGGGCAACTACGCCGAGGCTGGGCCACTCTACAAGCGGTCGTTGGC
CATAGACGAGAAGGCTCTGGGTCCGGAGCACCCTTCCGTGGCAACATCAC
TCAACAACCTGGCGGGGTTGTTCAGGGCCCAGGTGAGAACTTCATTCGGC
AATAGTATTTCTTCGAAATGTTTGATGTCCCTGTTCGAGACCGCGCTGGA
CACCTTGCCAAGTTGCTCTACTGTGTAGTACAATGTACTCAGCCCGCATG
CAAAATAATGCGAAAAGATTTATGTGATTTTGCGGAGTAGGAAACTGCTC
CCTAAGGAGAATGAGGTATGGTTATCTACGAACGACGTGCGATTTTGCAG
TGGACCATGGCGGAGATAGAGGCCGCCAACGACAAGAGTTAGATGTGATA
TCGCACACCAGGTCTTGTGCAACAAGTACTAGCCCTCGTGTGGGACATTC
GGCGCAAGTGTCAATGTGCTCGAGACAGATGATTTGCAAGTCCTATGACC
GCGTAGGATATCCAACGGCTCACATTTGTAGTCGCGCCTCTGTAAAGTTG
GTGGCCACTCACTTACACCGACCAATTCCCTATTGCGCAGGGCAACTACG
CCGAGGCTGGGCCACTATACAAGCGGTCGTTGGCCATAGACGAGAAGGCT
CTGGGTCCGGAGCACCCTTCCGTGGCAACATCACTCAACAACCTGGCGGG
GTTGTTTGAGACCCAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100484:137..852-

>mRNA_L-digitata_M_contig100484.1.1 ID=mRNA_L-digitata_M_contig100484.1.1|Name=mRNA_L-digitata_M_contig100484.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=258bp|location=Sequence derived from alignment at L-digitata_M_contig100484:137..852- (Laminaria digitata LdigPH10_18mv male)
GCGCAGGGCAACTACGCCGAGGCTGGGCCACTCTACAAGCGGTCGTTGGC
CATAGACGAGAAGGCTCTGGGTCCGGAGCACCCTTCCGTGGCAACATCAC
TCAACAACCTGGCGGGGTTGTTCAGGGCCCAGGGCAACTACGCCGAGGCT
GGGCCACTATACAAGCGGTCGTTGGCCATAGACGAGAAGGCTCTGGGTCC
GGAGCACCCTTCCGTGGCAACATCACTCAACAACCTGGCGGGGTTGTTTG
AGACCCAG
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