mRNA_L-digitata_M_contig100449.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100449.1.1
Unique NamemRNA_L-digitata_M_contig100449.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100449.1.1 vs. uniprot
Match: H6WB86_VAULI (Threonine--tRNA ligase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB86_VAULI)

HSP 1 Score: 68.2 bits (165), Expect = 8.380e-12
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   22 LLLTK-EALDVFHYNAFNLQETSLLYIATRIPDGGCTTVYRNGDFVFSLISPHLPSTTLI 198
            L+LTK EALD+F YN F +Q     YI T+IPDG CTTVY+NGDF+     PH+P +T+I
Sbjct:  266 LMLTKDEALDMFKYNPFKVQ-----YIQTKIPDGSCTTVYKNGDFIDLCRGPHVPQSTMI 320
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BLAST of mRNA_L-digitata_M_contig100449.1.1 vs. uniprot
Match: D8LFY0_ECTSI (Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY0_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.560e-11
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   22 LLLTKE-ALDVFHYNAFNLQETSLLYIATRIPDGGCTTVYRNGDFVFSLISPHLPSTTLI 198
            L+LTKE ALD+F YNAF  +     YI TRIPDGG TTVYRNGDFV     PH+P +T+I
Sbjct:  293 LVLTKEEALDMFDYNAFKKE-----YINTRIPDGGSTTVYRNGDFVDLCRGPHVPYSTMI 347
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BLAST of mRNA_L-digitata_M_contig100449.1.1 vs. uniprot
Match: A0A835YMV8_9STRA (Threonine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.610e-10
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   34 KEALDVFHYNAFNLQETSLLYIATRIPDGGCTTVYRNGDFVFSLISPHLPSTTLI 198
            +EAL++F YN F  Q     YI TRIP+GGCTTVY+NG+F+     PH+P +T+I
Sbjct:  269 EEALEMFKYNPFKAQ-----YIQTRIPEGGCTTVYKNGEFIDLCRGPHVPYSTMI 318
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BLAST of mRNA_L-digitata_M_contig100449.1.1 vs. uniprot
Match: A0A8J8P0U6_HALGN (Threonine--tRNA ligase n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8P0U6_HALGN)

HSP 1 Score: 54.3 bits (129), Expect = 6.500e-7
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:   19 VLLLTKEALDVFHYNAFNLQETSLLYIATRIPDGGCTTVYRNGDFVFSLISPHLPST 189
            ++L  +EAL +F YN F +Q      IAT+IPDGG  T YRNGD +     PH+P+T
Sbjct:  239 IILSKEEALRLFAYNPFKVQ-----LIATKIPDGGKVTAYRNGDLIDLCTGPHVPNT 290
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BLAST of mRNA_L-digitata_M_contig100449.1.1 vs. uniprot
Match: W7TCM5_9STRA (Threonine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCM5_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.270e-6
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   22 LLLTK-EALDVFHYNAFNLQETSLLYIATRIPDGGCTTVYRNGDFVFSLISPHLPST 189
            L++TK EAL +F YNAF   +TS+  I+++IP+GG TTVYRNGD +     PH+P T
Sbjct:  267 LVVTKAEALALFKYNAF---KTSI--ISSKIPEGGYTTVYRNGDLIDLCRGPHVPHT 318
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BLAST of mRNA_L-digitata_M_contig100449.1.1 vs. uniprot
Match: A0A1E3P1A3_WICAA (Threonine--tRNA ligase n=1 Tax=Wickerhamomyces anomalus (strain ATCC 58044 / CBS 1984 / NCYC 433 / NRRL Y-366-8) TaxID=683960 RepID=A0A1E3P1A3_WICAA)

HSP 1 Score: 48.1 bits (113), Expect = 9.740e-5
Identity = 24/57 (42.11%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   22 LLLTKE-ALDVFHYNAFNLQETSLLYIATRIPDGGCTTVYRNGDFVFSLISPHLPST 189
            L+++KE  L +FHY+ +   +T L  + T++PDGG TT+YRNG  +   + PH+P T
Sbjct:  215 LVVSKENLLKMFHYSKY---KTYL--VQTKVPDGGSTTIYRNGPLIDLCVGPHIPHT 266
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100449.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
H6WB86_VAULI8.380e-1256.67Threonine--tRNA ligase n=1 Tax=Vaucheria litorea T... [more]
D8LFY0_ECTSI1.560e-1161.67Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculo... [more]
A0A835YMV8_9STRA2.610e-1052.73Threonine--tRNA ligase n=1 Tax=Tribonema minus Tax... [more]
A0A8J8P0U6_HALGN6.500e-747.37Threonine--tRNA ligase n=1 Tax=Halteria grandinell... [more]
W7TCM5_9STRA2.270e-652.63Threonine--tRNA ligase n=2 Tax=Monodopsidaceae Tax... [more]
A0A1E3P1A3_WICAA9.740e-542.11Threonine--tRNA ligase n=1 Tax=Wickerhamomyces ano... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100449contigL-digitata_M_contig100449:265..897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LFY0
PFAMsHGTP_anticodon,TGS,tRNA-synt_2b,tRNA_SAD
Model size198
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01868
KEGG ReactionR03663
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.56e-12
EggNOG OGsCOG0441@1|root,KOG1637@2759|Eukaryota
EC6.1.1.3
Descriptionthreonyl-tRNA aminoacylation
Cds size198
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406607.337504-CDS-L-digitata_M_contig100449:264..3571682406607.337504-CDS-L-digitata_M_contig100449:264..357Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100449 265..357 +
1682406607.3462896-CDS-L-digitata_M_contig100449:792..8971682406607.3462896-CDS-L-digitata_M_contig100449:792..897Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100449 793..897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100449.1.1prot_L-digitata_M_contig100449.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100449 265..897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100449.1.1

>prot_L-digitata_M_contig100449.1.1 ID=prot_L-digitata_M_contig100449.1.1|Name=mRNA_L-digitata_M_contig100449.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=66bp
MLLVLVVLLLTKEALDVFHYNAFNLQETSLLYIATRIPDGGCTTVYRNGD
FVFSLISPHLPSTTLI
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mRNA from alignment at L-digitata_M_contig100449:265..897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100449.1.1 ID=mRNA_L-digitata_M_contig100449.1.1|Name=mRNA_L-digitata_M_contig100449.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=633bp|location=Sequence derived from alignment at L-digitata_M_contig100449:265..897+ (Laminaria digitata LdigPH10_18mv male)
ATGTTGTTAGTGTTGGTGGTGTTGTTGCTCACCAAGGAAGCCCTGGATGT
ATTCCACTACAACGCCTTCAACCTTCAAGAAACGAGCCTTCTAGTTTGTC
ACTGGTGGTGGTGTTACAGTAGTGGTGTGGAGAGGGAGCGGTGTTGGTGG
TGTTGGTGGTGGTGTTGTGTTGGTGGTGTTGGTGGTATTGGTGTTGGCGG
TGTTAGTGGTGGTGGTGGTGTTGGTGTTGGTGATGGTGGTAGTGTTGGTG
TTGGTACTGGTAGTTGTGTGGTGGGGGCCGCTCCACCCTCCACCCCCCCA
CCCCCCCGCACCAGCTCCCCCCCCCCAGGCGCGCCCCGCCACCAACCGNN
NNNNNNNNTGGTGTGTGTGGTTTCGTGTTGGTGTGTGGGGGGGCCGCCCC
CCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCACC
TCCCCCGATCAACCTCCCCCCCCCTACCCCCAACCATCACCCCCCCCCCG
CCGCAATGCCTAGTGAACGTTTAGGGAGTACATCGCGACGCGAATACCGG
ACGGAGGCTGCACGACGGTGTACCGCAACGGTGACTTCGTATTCTCCCTG
ATTTCCCCCCACCTCCCCTCCACCACTCTCATC
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Coding sequence (CDS) from alignment at L-digitata_M_contig100449:265..897+

>mRNA_L-digitata_M_contig100449.1.1 ID=mRNA_L-digitata_M_contig100449.1.1|Name=mRNA_L-digitata_M_contig100449.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=198bp|location=Sequence derived from alignment at L-digitata_M_contig100449:265..897+ (Laminaria digitata LdigPH10_18mv male)
ATGTTGTTAGTGTTGGTGGTGTTGTTGCTCACCAAGGAAGCCCTGGATGT
ATTCCACTACAACGCCTTCAACCTTCAAGAAACGAGCCTTCTATACATCG
CGACGCGAATACCGGACGGAGGCTGCACGACGGTGTACCGCAACGGTGAC
TTCGTATTCTCCCTGATTTCCCCCCACCTCCCCTCCACCACTCTCATC
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